Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 1.2e-42 176.0 87 100.0
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.7e-23 112.5 57 96.5
BcaB04g17903 Brassica carinata HOM05D004619 ORTHO05D032420 2.9e-15 85.1 103 51.5
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 3.8e-15 84.7 51 82.4
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 3.8e-15 84.7 51 82.4
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 6.4e-15 84.0 54 79.6
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 1.1e-14 83.2 51 80.4
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.9e-14 82.4 51 80.4
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.9e-14 82.4 51 80.4
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 3.2e-14 81.6 51 80.4
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 7.1e-14 80.5 51 78.4
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 3.5e-13 78.2 51 78.4
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 4.6e-13 77.8 51 78.4
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.9e-11 72.4 51 76.5
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 9.6e-11 70.1 51 70.6
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 9.6e-11 70.1 51 74.5
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 3.6e-10 68.2 51 64.7
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 1.8e-09 65.9 51 62.7
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 5.3e-09 64.3 51 62.7
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 5.3e-09 64.3 48 64.6
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 9.0e-09 63.5 51 62.7
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.2e-08 63.2 48 62.5
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.0e-08 62.4 50 58.0
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.0e-08 62.4 50 58.0
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 2.0e-08 62.4 51 60.8
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 2.6e-08 62.0 50 60.0
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 2.6e-08 62.0 52 61.5
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 3.4e-08 61.6 51 60.8
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 3.4e-08 61.6 51 60.8
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 5.8e-08 60.8 48 62.5
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 5.8e-08 60.8 51 60.8
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 7.6e-08 60.5 48 66.7
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 9.9e-08 60.1 48 60.4
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 9.9e-08 60.1 48 60.4
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 1.3e-07 59.7 48 58.3
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.7e-07 59.3 45 62.2
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 1.7e-07 59.3 48 62.5
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 2.2e-07 58.9 48 60.4
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 2.9e-07 58.5 54 53.7
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 3.8e-07 58.2 48 64.6
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 4.9e-07 57.8 51 54.9
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 6.4e-07 57.4 51 54.9
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 6.4e-07 57.4 45 60.0
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 1.1e-06 56.6 45 60.0
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.1e-06 56.6 46 58.7
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.1e-06 56.6 46 58.7
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.4e-06 56.2 45 60.0
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.9e-06 55.8 45 62.2
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 2.4e-06 55.5 46 54.3
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 2.4e-06 55.5 45 60.0
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 3.2e-06 55.1 48 54.2
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 3.2e-06 55.1 48 54.2
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 4.2e-06 54.7 52 55.8
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 4.2e-06 54.7 46 56.5
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 4.2e-06 54.7 51 51.0
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 4.2e-06 54.7 51 51.0
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 5.4e-06 54.3 46 58.7
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 5.4e-06 54.3 45 60.0
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 7.1e-06 53.9 51 51.0
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 9.3e-06 53.5 54 55.6
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 9.3e-06 53.5 45 55.6


User provided reference genes

Program Settings