Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28312 Brassica carinata HOM05D001306 ORTHO05D031970 3.7e-41 171.0 80 100.0
C05p43730 Brassica napus HOM05D001306 ORTHO05D031970 1.3e-38 162.5 91 87.9
BolC5t33089H Brassica oleracea HOM05D001306 ORTHO05D031970 5.0e-38 160.6 78 94.9
Thhalv10020212m.g Eutrema salsugineum HOM05D001306 ORTHO05D001159 1.3e-35 152.5 78 88.5
Sp3g18600 Schrenkiella parvula HOM05D001306 ORTHO05D001159 2.3e-35 151.8 78 85.9
BcaB04g20644 Brassica carinata HOM05D001306 ORTHO05D001159 1.9e-34 148.7 78 84.6
A01p34220 Brassica napus HOM05D001306 ORTHO05D001159 2.5e-34 148.3 78 84.6
BcaC09g49002 Brassica carinata HOM05D001306 ORTHO05D001159 3.3e-34 147.9 78 83.3
BraA01t03522Z Brassica rapa HOM05D001306 ORTHO05D001159 9.7e-34 146.4 78 83.3
C01p43610 Brassica napus HOM05D001306 ORTHO05D001159 1.8e-32 142.1 78 79.5
BolC1t04322H Brassica oleracea HOM05D001306 ORTHO05D001159 1.8e-32 142.1 78 79.5
BcaB06g26123 Brassica carinata HOM05D001306 ORTHO05D001159 2.4e-32 141.7 69 92.8
AL3G34440 Arabidopsis lyrata HOM05D001306 ORTHO05D001159 5.3e-32 140.6 78 80.8
BcaB04g19116 Brassica carinata HOM05D001306 ORTHO05D001159 5.3e-32 140.6 78 83.3
Carub.0003s2056 Capsella rubella HOM05D001306 ORTHO05D001159 1.2e-31 139.4 70 87.1
AT3G20580 Arabidopsis thaliana HOM05D001306 ORTHO05D001159 2.0e-31 138.7 78 78.2
BraA03t13336Z Brassica rapa HOM05D001306 ORTHO05D001159 4.5e-31 137.5 75 84.0
A03p41830 Brassica napus HOM05D001306 ORTHO05D001159 1.0e-30 136.3 75 82.7
BcaC01g03547 Brassica carinata HOM05D001306 ORTHO05D001159 2.9e-30 134.8 69 89.9
C03p51210 Brassica napus HOM05D001306 ORTHO05D001159 2.9e-30 134.8 69 89.9
BolC3t17411H Brassica oleracea HOM05D001306 ORTHO05D001159 2.9e-30 134.8 69 89.9
CARHR096370 Cardamine hirsuta HOM05D001306 ORTHO05D001159 9.4e-21 103.2 70 72.9
THA.LOC104798780 Tarenaya hassleriana HOM05D001306 ORTHO05D001159 1.0e-19 99.8 82 59.8
THA.LOC104816922 Tarenaya hassleriana HOM05D001306 ORTHO05D001159 5.1e-19 97.4 82 54.9
Aa31LG8G7390 Aethionema arabicum HOM05D001306 ORTHO05D001159 4.5e-15 84.3 69 59.4
Sopen10g002400 Solanum pennellii HOM05D001306 ORTHO05D001159 5.2e-11 70.9 70 44.3
Solyc10g006450.3 Solanum lycopersicum HOM05D001306 ORTHO05D001159 1.5e-10 69.3 70 44.3
CAN.G1110.5 Capsicum annuum HOM05D001306 ORTHO05D001159 2.0e-10 68.9 72 45.8
TWI39G0978 Tripterygium wilfordii HOM05D001306 ORTHO05D001159 2.6e-10 68.6 72 45.8
Nitab4.5_0002342g0060 Nicotiana tabacum HOM05D001306 ORTHO05D001159 5.7e-10 67.4 72 48.6
Aa31LG3G10700 Aethionema arabicum HOM05D001306 ORTHO05D001159 7.5e-10 67.0 57 54.4
Peaxi162Scf00407g00039 Petunia axillaris HOM05D001306 ORTHO05D001159 9.7e-10 66.6 76 47.4
Sabra16G0284500 Salix brachista HOM05D001306 ORTHO05D001159 2.8e-09 65.1 73 45.2
PGSC0003DMG400014428 Solanum tuberosum HOM05D001306 ORTHO05D001159 2.8e-09 65.1 69 42.0
Nitab4.5_0008018g0010 Nicotiana tabacum HOM05D001306 ORTHO05D001159 4.8e-09 64.3 70 41.4
MD03G1209900 Malus domestica HOM05D001306 ORTHO05D001159 6.3e-09 63.9 74 39.2
Nitab4.5_0002229g0150 Nicotiana tabacum HOM05D001306 ORTHO05D001159 6.3e-09 63.9 71 46.5
CiPaw.11G185000 Carya illinoinensis HOM05D001306 ORTHO05D001159 8.2e-09 63.5 79 38.0
CAN.G337.96 Capsicum annuum HOM05D001306 ORTHO05D001159 4.1e-08 61.2 70 40.0
Potri.001G419000 Populus trichocarpa HOM05D001306 ORTHO05D001159 4.1e-08 61.2 71 42.3
MELO3C018094.2 Cucumis melo HOM05D001306 ORTHO05D001159 5.3e-08 60.8 63 49.2
Duzib213G0807 Durio zibethinus HOM05D001306 ORTHO05D001159 5.3e-08 60.8 69 42.0
Thecc.07G050500 Theobroma cacao HOM05D001306 ORTHO05D001159 7.0e-08 60.5 69 44.9
Duzib268G1798 Durio zibethinus HOM05D001306 ORTHO05D001159 9.1e-08 60.1 76 40.8
Peaxi162Scf00450g00875 Petunia axillaris HOM05D001306 ORTHO05D001159 9.1e-08 60.1 69 46.4
Sed0018984 Sechium edule HOM05D001306 ORTHO05D001159 1.2e-07 59.7 74 45.9
Solyc07g064200.4 Solanum lycopersicum HOM05D001306 ORTHO05D001159 1.2e-07 59.7 69 42.0
PGSC0003DMG400001032 Solanum tuberosum HOM05D001306 ORTHO05D001159 1.2e-07 59.7 69 43.5
AUR62015669 Chenopodium quinoa HOM05D001306 ORTHO05D001159 2.0e-07 58.9 93 34.4
Nitab4.5_0013434g0010 Nicotiana tabacum HOM05D001306 ORTHO05D001159 2.0e-07 58.9 69 39.1
Sopen07g032340 Solanum pennellii HOM05D001306 ORTHO05D001159 2.7e-07 58.5 69 42.0
AUR62020534 Chenopodium quinoa HOM05D001306 ORTHO05D001159 3.5e-07 58.2 93 33.3
Potri.011G135200 Populus trichocarpa HOM05D001306 ORTHO05D001159 3.5e-07 58.2 75 45.3
TAR624G0946 Trochodendron aralioides HOM05D001306 ORTHO05D001159 3.5e-07 58.2 69 42.0
MD11G1224600 Malus domestica HOM05D001306 ORTHO05D001159 4.5e-07 57.8 70 37.1
EL10Ac4g07939 Beta vulgaris HOM05D001306 ORTHO05D001159 7.7e-07 57.0 95 34.7
Migut.M01800 Erythranthe guttata HOM05D001306 ORTHO05D001159 7.7e-07 57.0 69 37.7
Ah.04g165570 Amaranthus hybridus HOM05D001306 ORTHO05D001159 1.0e-06 56.6 90 37.8
Haze_09630 Corylus avellana HOM05D001306 ORTHO05D001159 1.0e-06 56.6 61 45.9
Nn1g07059 Nelumbo nucifera HOM05D001306 ORTHO05D001159 1.3e-06 56.2 69 42.0
QL08p012745 Quercus lobata HOM05D001306 ORTHO05D001159 1.3e-06 56.2 79 40.5
QL08p012872 Quercus lobata HOM05D001306 ORTHO05D001159 1.3e-06 56.2 79 40.5
RcHm_v2.0_Chr5g0037811 Rosa chinensis HOM05D001306 ORTHO05D001159 1.7e-06 55.8 76 46.1
CSS0035693 Camellia sinensis var. sinensis HOM05D001306 ORTHO05D001159 2.2e-06 55.5 72 41.7
Cfa020403 Carpinus fangiana HOM05D001306 ORTHO05D001159 2.2e-06 55.5 50 52.0
SHI31834 Sapria himalayana HOM05D001306 ORTHO05D001159 2.2e-06 55.5 69 40.6
Sc03g0008880 Simmondsia chinensis HOM05D001306 ORTHO05D001159 2.9e-06 55.1 97 37.1
SGA_v2.0_scaffold22G09783 Striga asiatica HOM05D001306 ORTHO05D001159 3.8e-06 54.7 50 48.0
Ca_01739_v3 Cicer arietinum L. HOM05D001306 ORTHO05D001159 5.0e-06 54.3 62 43.5
Eucgr.F03435 Eucalyptus grandis HOM05D001306 ORTHO05D001159 5.0e-06 54.3 47 46.8
COL.COLO4_09588 Corchorus olitorius HOM05D001306 ORTHO05D001159 6.5e-06 53.9 53 49.1
Duzib235G1383 Durio zibethinus HOM05D001306 ORTHO05D001159 6.5e-06 53.9 71 45.1
Atru.chr2.3230 Acer truncatum HOM05D001306 ORTHO05D001159 8.5e-06 53.5 56 44.6
Actinidia35325 Actinidia chinensis HOM05D001306 ORTHO05D001159 8.5e-06 53.5 70 38.6
Aqoxy3G01005 Aquilegia oxysepala HOM05D001306 ORTHO05D001159 8.5e-06 53.5 67 38.8
AL7G25690 Arabidopsis lyrata HOM05D001306 ORTHO05D001159 8.5e-06 53.5 67 43.3
Carub.0007s1373 Capsella rubella HOM05D001306 ORTHO05D001159 8.5e-06 53.5 62 45.2


User provided reference genes

Program Settings