Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28232 Brassica carinata HOM05D001049 ORTHO05D026858 1.1e-30 136.0 67 100.0
BolC5t33017H Brassica oleracea HOM05D001049 ORTHO05D026858 1.1e-30 136.0 67 100.0
BcaB06g26057 Brassica carinata HOM05D001049 ORTHO05D005951 5.1e-28 127.1 67 94.0
BcaC01g04452 Brassica carinata HOM05D001049 ORTHO05D005951 5.1e-28 127.1 67 94.0
C03p40010 Brassica napus HOM05D001049 ORTHO05D005951 5.1e-28 127.1 67 94.0
BraA03t12457Z Brassica rapa HOM05D001049 ORTHO05D005951 1.1e-27 125.9 67 92.5
BcaC01g04542 Brassica carinata HOM05D001049 ORTHO05D005951 2.5e-27 124.8 67 92.5
A03p32880 Brassica napus HOM05D001049 ORTHO05D005951 3.3e-27 124.4 67 91.0
BolC3t16266H Brassica oleracea HOM05D001049 ORTHO05D005951 1.3e-26 122.5 67 91.0
CARHR076240 Cardamine hirsuta HOM05D001049 ORTHO05D005951 2.4e-25 118.2 67 88.1
Carub.0003s2478 Capsella rubella HOM05D001049 ORTHO05D005951 5.3e-25 117.1 67 88.1
Sp3g01340 Schrenkiella parvula HOM05D001049 ORTHO05D005951 2.0e-24 115.2 67 86.6
Thhalv10011322m.g Eutrema salsugineum HOM05D001049 ORTHO05D005951 4.5e-24 114.0 67 83.6
AT3G02280 Arabidopsis thaliana HOM05D001049 ORTHO05D005951 2.2e-23 111.7 68 83.8
Aa31LG5G12810 Aethionema arabicum HOM05D001049 ORTHO05D005951 3.8e-23 110.9 65 83.1
AT3G24710 Arabidopsis thaliana HOM05D001049 ORTHO05D026858 1.0e-20 102.8 67 80.6
THA.LOC104820980 Tarenaya hassleriana HOM05D001049 ORTHO05D005951 1.9e-19 98.6 67 79.1
AL3G11560 Arabidopsis lyrata HOM05D001049 ORTHO05D005951 5.6e-19 97.1 63 79.4
vmacro05566 Vaccinium macrocarpon HOM05D001049 ORTHO05D005951 6.2e-18 93.6 63 71.4
EL10Ac2g04590 Beta vulgaris HOM05D001049 ORTHO05D005951 8.1e-18 93.2 66 69.7
Sc11g0008260 Simmondsia chinensis HOM05D001049 ORTHO05D005951 1.4e-17 92.4 65 72.3
Ah.10g037600 Amaranthus hybridus HOM05D001049 ORTHO05D005951 1.8e-17 92.0 66 71.2
AUR62014524 Chenopodium quinoa HOM05D001049 ORTHO05D005951 2.4e-17 91.7 65 70.8
Cpa.g.sc179.4 Carica papaya HOM05D001049 ORTHO05D005951 3.1e-17 91.3 65 69.2
Duzib150G0039 Durio zibethinus HOM05D001049 ORTHO05D005951 3.1e-17 91.3 65 64.6
Thecc.09G259800 Theobroma cacao HOM05D001049 ORTHO05D005951 3.1e-17 91.3 65 64.6
Gohir.A07G116600 Gossypium hirsutum HOM05D001049 ORTHO05D005951 6.9e-17 90.1 65 64.6
Gorai.001G130600 Gossypium raimondii HOM05D001049 ORTHO05D005951 6.9e-17 90.1 65 64.6
AUR62008979 Chenopodium quinoa HOM05D001049 ORTHO05D005951 9.0e-17 89.7 65 67.7
Actinidia15879 Actinidia chinensis HOM05D001049 ORTHO05D005951 1.5e-16 89.0 65 70.8
TWI74G0592 Tripterygium wilfordii HOM05D001049 ORTHO05D005951 2.0e-16 88.6 65 66.2
CANSAT64G1724 Cannabis sativa HOM05D001049 ORTHO05D005951 3.4e-16 87.8 65 64.6
Rhsim02G0050700 Rhododendron simsii HOM05D001049 ORTHO05D005951 3.4e-16 87.8 63 68.3
GSVIVG01031054001 Vitis vinifera HOM05D001049 ORTHO05D005951 3.4e-16 87.8 65 64.6
TAR629G0236 Trochodendron aralioides HOM05D001049 ORTHO05D005951 7.6e-16 86.7 65 67.7
FAN05G1438 Fragaria x ananassa HOM05D001049 ORTHO05D005951 9.9e-16 86.3 63 68.3
FAN14G1155 Fragaria x ananassa HOM05D001049 ORTHO05D005951 9.9e-16 86.3 63 68.3
Prupe.3G238300 Prunus persica HOM05D001049 ORTHO05D005951 9.9e-16 86.3 65 67.7
Eucgr.J01497 Eucalyptus grandis HOM05D001049 ORTHO05D005951 1.3e-15 85.9 63 71.4
Hund13726 Selenicereus undatus HOM05D001049 ORTHO05D005951 1.3e-15 85.9 65 66.2
CSS0032537 Camellia sinensis var. sinensis HOM05D001049 ORTHO05D005951 1.7e-15 85.5 65 66.2
Lj4C194T12 Lonicera japonica HOM05D001049 ORTHO05D005951 2.2e-15 85.1 63 69.8
Phvul.008G004800 Phaseolus vulgaris HOM05D001049 ORTHO05D005951 2.2e-15 85.1 65 61.5
PGR042G0664 Punica granatum HOM05D001049 ORTHO05D005951 2.2e-15 85.1 63 68.3
FAN02G0215 Fragaria x ananassa HOM05D001049 ORTHO05D005951 3.8e-15 84.3 63 66.7
Lj1g0012839 Lotus japonicus HOM05D001049 ORTHO05D005951 4.9e-15 84.0 65 63.1
Lj1g0028233 Lotus japonicus HOM05D001049 ORTHO05D005951 4.9e-15 84.0 65 63.1
VMungo1383G0137 Vigna mungo HOM05D001049 ORTHO05D005951 4.9e-15 84.0 65 60.0
CsaV3_4G004300 Cucumis sativus L. HOM05D001049 ORTHO05D005951 6.4e-15 83.6 65 66.2
Nitab4.5_0005199g0010 Nicotiana tabacum HOM05D001049 ORTHO05D005951 6.4e-15 83.6 63 65.1
SalBow5G3175 Salvia bowleyana HOM05D001049 ORTHO05D005951 6.4e-15 83.6 65 60.0
PGSC0003DMG400012672 Solanum tuberosum HOM05D001049 ORTHO05D005951 6.4e-15 83.6 70 64.3
CiPaw.04G041100 Carya illinoinensis HOM05D001049 ORTHO05D005951 8.4e-15 83.2 60 73.3
Cc07_g08880 Coffea canephora HOM05D001049 ORTHO05D005951 8.4e-15 83.2 64 60.9
RcHm_v2.0_Chr2g0162931 Rosa chinensis HOM05D001049 ORTHO05D005951 8.4e-15 83.2 64 64.1
CAN.G625.5 Capsicum annuum HOM05D001049 ORTHO05D005951 1.1e-14 82.8 64 65.6
Aqoxy3G03945 Aquilegia oxysepala HOM05D001049 ORTHO05D005951 1.4e-14 82.4 65 63.1
Dinv34836 Davidia involucrata HOM05D001049 ORTHO05D005951 1.4e-14 82.4 65 63.1
MD09G1087200 Malus domestica HOM05D001049 ORTHO05D005951 1.4e-14 82.4 65 64.6
Medtr1g102950 Medicago truncatula HOM05D001049 ORTHO05D005951 1.4e-14 82.4 63 65.1
Medtr7g406970 Medicago truncatula HOM05D001049 ORTHO05D005951 1.4e-14 82.4 63 65.1
Nitab4.5_0001569g0100 Nicotiana tabacum HOM05D001049 ORTHO05D005951 1.4e-14 82.4 63 65.1
Migut.L00308 Erythranthe guttata HOM05D001049 ORTHO05D005951 1.9e-14 82.0 64 62.5
HanXRQChr12g0376471 Helianthus annuus HOM05D001049 ORTHO05D005951 1.9e-14 82.0 64 64.1
Lj6g0008823 Lotus japonicus HOM05D001049 ORTHO05D005951 1.9e-14 82.0 65 61.5
MBI19_g21647_MAGBIO Magnolia biondii HOM05D001049 ORTHO05D005951 1.9e-14 82.0 65 60.0
Solyc02g085820.3 Solanum lycopersicum HOM05D001049 ORTHO05D005951 1.9e-14 82.0 70 62.9
Sabra04G0079000 Salix brachista HOM05D001049 ORTHO05D005951 2.4e-14 81.6 65 64.6
DCAR_029530 Daucus carota HOM05D001049 ORTHO05D005951 4.2e-14 80.9 63 61.9
ECA236G0274 Erigeron canadensis HOM05D001049 ORTHO05D005951 4.2e-14 80.9 64 62.5
TPR.G9733 Trifolium pratense HOM05D001049 ORTHO05D005951 4.2e-14 80.9 63 61.9
ClCG07G017080 Citrullus lanatus HOM05D001049 ORTHO05D005951 5.5e-14 80.5 65 61.5
SGA_v2.0_scaffold114G32024 Striga asiatica HOM05D001049 ORTHO05D005951 5.5e-14 80.5 64 62.5
HPP92_005481 Vanilla planifolia HOM05D001049 ORTHO05D005951 5.5e-14 80.5 63 57.1
arahy.Tifrunner.gnm1.ann1.NBV3FR Arachis hypogaea HOM05D001049 ORTHO05D005951 7.1e-14 80.1 65 58.5
arahy.Tifrunner.gnm1.ann1.YPBB19 Arachis hypogaea HOM05D001049 ORTHO05D005951 7.1e-14 80.1 65 58.5
Medtr7g101180 Medicago truncatula HOM05D001049 ORTHO05D005951 7.1e-14 80.1 63 63.5
Ca_04065_v3 Cicer arietinum L. HOM05D001049 ORTHO05D005951 9.3e-14 79.7 65 60.0
Hma1.2p1_0550F.1_g177330 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 1.2e-13 79.3 65 61.5
Potri.004G101100 Populus trichocarpa HOM05D001049 ORTHO05D005951 1.6e-13 79.0 65 63.1
Glyma.18G297800 Glycine max HOM05D001049 ORTHO05D005951 2.1e-13 78.6 65 60.0
Lsat_1_v5_gn_9_32960 Lactuca sativa HOM05D001049 ORTHO05D005951 2.1e-13 78.6 64 59.4
Lalb_Chr10g0091161 Lupinus albus HOM05D001049 ORTHO05D005951 2.1e-13 78.6 65 56.9
Sed0012519 Sechium edule HOM05D001049 ORTHO05D005951 2.1e-13 78.6 65 61.5
Os01g0733600 Oryza sativa ssp. japonica HOM05D001049 ORTHO05D005951 2.7e-13 78.2 63 58.7
PSO782G4668 Papaver somniferum HOM05D001049 ORTHO05D005951 4.6e-13 77.4 65 60.0
QL02p051854 Quercus lobata HOM05D001049 ORTHO05D005951 4.6e-13 77.4 64 59.4
CDE05G2905 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 6.0e-13 77.0 64 54.7
Ciclev10000583m.g Citrus clementina HOM05D001049 ORTHO05D005951 6.0e-13 77.0 65 56.9
Psat3g206240 Pisum sativum HOM05D001049 ORTHO05D005951 1.0e-12 76.3 65 60.0
Mapoly0012s0011 Marchantia polymorpha HOM05D001049 ORTHO05D005951 1.3e-12 75.9 66 57.6
Atru.chr7.1178 Acer truncatum HOM05D001049 ORTHO05D005951 1.8e-12 75.5 64 59.4
CDE05G2069 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 1.8e-12 75.5 64 53.1
Manes.01G109200 Manihot esculenta HOM05D001049 ORTHO05D005951 1.8e-12 75.5 63 60.3
PSO566G0159 Papaver somniferum HOM05D001049 ORTHO05D005951 2.3e-12 75.1 65 58.5
TAR371G1090 Trochodendron aralioides HOM05D001049 ORTHO05D005951 2.3e-12 75.1 65 64.6
AagrBONN_evm.TU.Sc2ySwM_340.441 Anthoceros agrestis HOM05D001049 ORTHO05D005951 3.9e-12 74.3 65 55.4
CAN.G852.5 Capsicum annuum HOM05D001049 ORTHO05D005951 5.1e-12 73.9 64 57.8
Peaxi162Scf00814g00241 Petunia axillaris HOM05D001049 ORTHO05D005951 6.7e-12 73.6 61 63.9
Atru.chr13.1275 Acer truncatum HOM05D001049 ORTHO05D005951 8.7e-12 73.2 65 56.9
Potri.011G027100 Populus trichocarpa HOM05D001049 ORTHO05D026858 8.7e-12 73.2 70 58.6
MD12G1122800 Malus domestica HOM05D001049 ORTHO05D005951 1.1e-11 72.8 66 59.1
Zm00001eb154050 Zea mays HOM05D001049 ORTHO05D005951 1.5e-11 72.4 62 53.2
CBR_g76440 Chara braunii HOM05D001049 ORTHO05D005951 3.3e-11 71.2 66 48.5
FAN14G2476 Fragaria x ananassa HOM05D001049 ORTHO05D005951 3.3e-11 71.2 63 60.3
Pp3c9_18000 Physcomitrium patens HOM05D001049 ORTHO05D005951 3.3e-11 71.2 65 50.8
Glyma.08G364302 Glycine max HOM05D001049 ORTHO05D005951 5.6e-11 70.5 62 54.8
SHI03732 Sapria himalayana HOM05D001049 ORTHO05D005951 3.7e-10 67.8 66 47.0
MELO3C017636.2 Cucumis melo HOM05D001049 ORTHO05D005951 8.2e-10 66.6 55 61.8
ATR0564G081 Amborella trichopoda HOM05D001049 ORTHO05D005951 5.8e-08 60.5 56 53.6
Cre12.g551850 Chlamydomonas reinhardtii HOM05D001049 ORTHO05D005951 1.4e-06 55.8 55 49.1
MCO06G260 Micromonas commoda HOM05D001049 ORTHO05D005951 4.2e-06 54.3 58 48.3


User provided reference genes

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