Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 2.0e-144 515.8 269 100.0
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 2.0e-144 515.8 269 100.0
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 1.2e-139 500.0 259 100.0
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 8.0e-133 477.2 271 92.6
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 6.4e-130 467.6 269 90.7
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 6.0e-128 461.1 270 89.3
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 2.5e-126 455.7 272 89.0
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 2.5e-126 455.7 261 93.1
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 3.4e-123 445.3 271 87.8
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 6.4e-122 441.0 270 87.0
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 1.2e-120 436.8 271 86.3
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 3.5e-120 435.3 255 88.6
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 3.3e-118 428.7 271 84.1
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.2e-117 426.8 257 87.2
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 8.1e-117 424.1 261 86.2
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.1e-116 423.7 270 84.1
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 8.9e-116 420.6 276 82.2
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 8.9e-116 420.6 261 85.8
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.8e-115 417.9 272 82.0
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 3.0e-111 405.6 267 82.0
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 1.1e-110 403.7 274 78.1
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.6e-109 398.7 270 78.9
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.6e-109 398.7 249 84.7
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 6.2e-109 397.9 271 80.1
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 3.1e-108 395.6 273 78.4
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 3.3e-102 375.6 248 80.2
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 9.6e-102 374.0 248 79.8
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 1.1e-100 370.5 248 79.0
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 1.8e-100 369.8 229 81.7
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 4.0e-100 368.6 223 83.0
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 4.0e-100 368.6 243 78.6
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 5.3e-100 368.2 223 82.5
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 5.3e-100 368.2 206 88.3
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 9.0e-100 367.5 258 74.8
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 9.0e-100 367.5 223 82.1
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 1.5e-99 366.7 230 80.4
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.0e-99 366.3 230 80.4
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 2.0e-99 366.3 266 72.2
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 2.0e-99 366.3 223 83.0
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 3.4e-99 365.5 265 73.6
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 4.5e-99 365.2 222 83.3
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 4.5e-99 365.2 270 71.5
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 5.8e-99 364.8 225 82.7
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 5.8e-99 364.8 220 83.6
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 7.6e-99 364.4 198 88.4
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 9.9e-99 364.0 270 70.7
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 9.9e-99 364.0 223 82.1
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 9.9e-99 364.0 280 68.6
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.3e-98 363.6 241 78.4
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 1.3e-98 363.6 243 76.5
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 3.8e-98 362.1 226 81.4
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 3.8e-98 362.1 249 74.3
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 4.9e-98 361.7 230 79.6
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 6.4e-98 361.3 263 72.6
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 8.4e-98 360.9 218 82.6
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.1e-97 360.5 232 79.7
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.1e-97 360.5 255 74.1
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.4e-97 360.1 209 84.7
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 1.9e-97 359.8 238 78.6
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 1.9e-97 359.8 249 73.5
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.4e-97 359.4 225 80.0
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.2e-97 359.0 235 78.3
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 5.4e-97 358.2 224 81.2
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 5.4e-97 358.2 225 79.6
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 5.4e-97 358.2 250 76.0
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 7.1e-97 357.8 209 84.2
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 9.3e-97 357.5 248 77.0
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 9.3e-97 357.5 233 79.8
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.2e-96 357.1 212 83.5
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 1.2e-96 357.1 207 85.0
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 1.2e-96 357.1 230 78.7
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 1.6e-96 356.7 270 71.9
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 4.6e-96 355.1 223 80.3
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 4.6e-96 355.1 229 77.7
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 6.0e-96 354.8 257 72.4
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 2.3e-95 352.8 218 83.0
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 3.9e-95 352.1 260 71.5
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 5.1e-95 351.7 220 82.7
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 8.7e-95 350.9 257 70.4
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 1.1e-94 350.5 252 71.4
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.5e-94 350.1 251 75.3
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 2.5e-94 349.4 222 78.8
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 3.3e-94 349.0 220 78.6
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 4.3e-94 348.6 251 72.5
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 4.3e-94 348.6 217 79.3
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 4.3e-94 348.6 199 85.4
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 7.4e-94 347.8 210 81.9
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 2.1e-93 346.3 233 76.4
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 2.8e-93 345.9 238 76.9
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.8e-93 345.9 189 87.3
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 3.6e-93 345.5 226 77.0
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 6.2e-93 344.7 225 76.9
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 8.1e-93 344.4 217 77.4
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 1.8e-92 343.2 252 70.6
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.8e-92 343.2 249 70.7
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.0e-92 342.0 227 78.0
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 5.3e-92 341.7 265 69.1
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 9.0e-92 340.9 265 68.7
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.2e-91 340.5 235 74.5
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.5e-91 340.1 227 77.5
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.0e-91 339.7 210 81.0
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 2.0e-91 339.7 231 75.8
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.6e-91 339.3 225 77.8
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.6e-91 339.3 225 77.8
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 5.8e-91 338.2 224 75.4
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 9.9e-91 337.4 268 69.8
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.2e-90 336.3 230 73.5
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 2.2e-90 336.3 198 81.8
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 2.4e-89 332.8 280 63.9
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 9.3e-89 330.9 259 68.3
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 9.3e-89 330.9 226 76.1
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 2.3e-87 326.2 248 68.1
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.1e-86 323.9 221 75.6
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 1.1e-84 317.4 196 78.6
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 1.1e-84 317.4 261 68.2
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 2.0e-83 313.2 275 66.5
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.6e-83 311.2 297 58.6
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.0e-82 310.8 206 75.7
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 6.5e-82 308.1 265 66.0
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.1e-81 307.4 195 78.5
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.5e-81 306.2 261 65.5
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 9.3e-81 304.3 166 88.0
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 4.6e-80 302.0 258 65.1
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.6e-77 293.5 166 86.1
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 2.1e-77 293.1 246 61.8
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.8e-76 290.0 206 70.4
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.6e-72 276.9 153 85.0
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 4.6e-72 275.4 208 69.2
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 6.1e-72 275.0 238 60.5
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.3e-71 273.1 179 75.4
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.7e-71 271.6 159 85.5
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 9.7e-70 267.7 191 69.6
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.1e-68 264.2 207 63.8
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 1.4e-68 263.8 217 65.9
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.8e-68 263.5 151 82.8
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 7.7e-67 258.1 201 66.2
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.3e-66 257.3 158 77.2
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.0e-66 255.4 245 59.6
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 5.0e-66 255.4 148 79.7
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 8.5e-66 254.6 149 83.9
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 3.6e-64 249.2 219 63.0
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 1.5e-62 243.8 179 70.9
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 9.7e-62 241.1 187 66.3
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 9.7e-62 241.1 235 57.4
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.9e-57 226.9 167 71.3
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 7.2e-57 224.9 134 76.9
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 9.4e-57 224.6 229 58.1
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 6.1e-56 221.9 261 43.7
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 1.8e-52 210.3 156 73.7
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 1.6e-48 197.2 131 75.6
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 3.7e-45 186.0 142 66.9
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 5.9e-43 178.7 341 39.6
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 8.8e-39 164.9 192 51.0
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 7.5e-38 161.8 188 43.1
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 5.9e-35 152.1 200 39.0
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 7.2e-33 145.2 222 38.7
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 8.3e-29 131.7 84 77.4
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 4.1e-20 102.8 62 75.8
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 2.0e-19 100.5 62 74.2
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 2.5e-17 93.6 100 58.0
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 5.6e-17 92.4 59 74.6
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.4e-12 77.8 41 90.2
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 5.4e-12 75.9 48 83.3
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.7e-10 70.9 36 86.1
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.0e-10 70.1 68 58.8
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.9e-10 69.7 36 83.3
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 6.6e-10 68.9 39 84.6
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 1.9e-09 67.4 118 36.4
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 4.7e-08 62.8 32 87.5
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.3e-07 60.5 42 64.3
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.5e-06 57.8 34 73.5
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 1.5e-06 57.8 109 36.7


User provided reference genes

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