Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 1.8e-133 479.6 295 100.0
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 6.7e-133 477.6 295 99.7
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 2.4e-130 469.2 295 89.8
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 1.0e-128 463.8 295 89.2
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 1.7e-128 463.0 295 89.2
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 2.2e-123 446.0 297 87.9
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 3.7e-123 445.3 297 87.5
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 1.3e-120 436.8 298 88.3
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 1.3e-120 436.8 298 88.3
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 1.3e-120 436.8 298 88.3
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 5.2e-117 424.9 295 81.4
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 1.4e-114 416.8 301 83.7
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 7.8e-113 411.0 298 82.6
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 3.8e-112 408.7 299 81.6
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 3.3e-111 405.6 297 87.5
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 2.8e-110 402.5 295 73.9
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 6.1e-110 401.4 302 80.1
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.4e-109 400.2 296 75.7
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 6.8e-109 397.9 304 80.6
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.5e-108 396.7 304 79.3
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 1.3e-107 393.7 295 74.2
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 2.0e-105 386.3 295 72.2
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 4.3e-103 378.6 297 77.4
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 9.5e-103 377.5 298 71.5
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 3.5e-97 359.0 296 68.6
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 9.3e-74 281.2 295 58.3
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 3.9e-72 275.8 294 56.1
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.9e-71 273.5 294 55.8
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.3e-71 272.7 289 69.6
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 4.3e-71 272.3 296 55.1
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 4.3e-71 272.3 292 68.2
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.3e-71 272.3 288 69.8
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 2.1e-70 270.0 298 68.1
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 4.8e-70 268.9 289 60.9
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 6.2e-70 268.5 297 62.0
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.4e-69 267.3 301 60.8
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 1.8e-69 266.9 259 72.2
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.8e-69 266.9 291 68.0
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 3.1e-69 266.2 296 67.6
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 4.0e-69 265.8 298 53.7
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 5.3e-69 265.4 297 66.3
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 5.3e-69 265.4 292 61.6
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 6.9e-69 265.0 301 53.8
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 9.0e-69 264.6 289 62.6
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 9.0e-69 264.6 295 61.0
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.5e-68 263.8 301 59.8
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 1.5e-68 263.8 291 65.3
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.6e-68 263.1 298 55.7
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.6e-68 263.1 290 55.2
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 4.5e-68 262.3 273 60.4
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 5.8e-68 261.9 297 66.0
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 7.6e-68 261.5 287 62.7
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 2.9e-67 259.6 258 71.3
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 3.8e-67 259.2 259 56.4
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 4.9e-67 258.8 281 54.8
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 4.9e-67 258.8 304 60.5
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 8.4e-67 258.1 307 57.3
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 8.4e-67 258.1 256 64.1
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 1.4e-66 257.3 294 54.4
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.4e-66 257.3 294 55.1
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.9e-66 256.9 294 54.8
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 3.2e-66 256.1 300 60.3
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 4.2e-66 255.8 268 61.6
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 4.2e-66 255.8 300 62.7
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 7.1e-66 255.0 285 53.7
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 7.1e-66 255.0 295 53.6
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 9.3e-66 254.6 300 62.3
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 9.3e-66 254.6 290 59.0
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 9.3e-66 254.6 299 53.8
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.2e-65 254.2 304 61.2
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 1.2e-65 254.2 298 52.3
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.1e-65 253.4 298 54.7
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.1e-65 253.4 298 54.7
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 2.1e-65 253.4 297 55.6
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 3.5e-65 252.7 289 58.5
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 3.5e-65 252.7 283 67.1
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 6.0e-65 251.9 299 58.5
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 6.0e-65 251.9 301 54.2
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.3e-64 250.8 242 66.5
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.8e-64 250.4 241 66.0
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 2.3e-64 250.0 256 60.9
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 3.0e-64 249.6 256 64.5
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.0e-64 249.6 241 66.4
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.0e-64 249.6 241 66.4
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 3.9e-64 249.2 308 51.9
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.1e-64 248.8 241 66.4
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 8.7e-64 248.1 193 91.2
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.1e-63 247.7 256 63.3
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 2.5e-63 246.5 298 60.7
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 7.4e-63 245.0 290 55.5
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 9.6e-63 244.6 263 59.7
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.3e-62 244.2 299 50.2
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.6e-62 243.8 262 56.5
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.1e-62 243.4 284 53.5
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 8.1e-62 241.5 293 50.2
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.8e-61 240.4 248 54.8
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 4.0e-61 239.2 285 58.9
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 5.3e-61 238.8 282 52.8
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 6.9e-61 238.4 304 51.0
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 1.5e-60 237.3 264 58.0
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 1.5e-60 237.3 286 63.6
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 2.0e-60 236.9 278 55.0
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 2.9e-59 233.0 292 53.8
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 4.9e-59 232.3 263 56.3
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.9e-58 230.3 298 49.7
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 1.9e-58 230.3 283 50.5
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 2.5e-58 229.9 288 64.2
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.2e-58 229.6 283 50.9
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 7.1e-58 228.4 298 59.7
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 3.5e-57 226.1 307 54.4
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 4.6e-57 225.7 293 57.7
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.3e-56 223.4 300 49.0
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 3.0e-56 223.0 263 51.7
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.5e-55 219.9 292 47.9
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 4.3e-55 219.2 282 50.4
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 1.6e-54 217.2 285 48.8
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 6.2e-54 215.3 233 54.9
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 6.2e-54 215.3 277 54.5
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 8.2e-54 214.9 271 60.1
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.1e-53 214.5 241 57.3
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.4e-53 214.2 291 62.2
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.4e-53 213.4 303 52.5
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 4.0e-53 212.6 282 48.9
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.9e-53 211.8 299 52.5
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 9.0e-53 211.5 249 51.4
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.2e-51 206.8 293 52.6
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.5e-50 202.2 278 49.3
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.9e-49 198.4 283 52.7
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 1.3e-48 197.6 250 56.8
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.7e-47 192.2 213 61.5
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 5.7e-47 192.2 262 49.6
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.6e-46 190.7 278 46.8
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.0e-44 183.7 296 42.2
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 4.5e-44 182.6 209 56.0
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 7.2e-42 175.3 256 43.4
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 1.2e-41 174.5 249 56.2
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 6.1e-41 172.2 268 41.8
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 6.7e-40 168.7 201 57.2
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 7.7e-36 155.2 170 66.5
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.0e-35 154.8 277 39.4
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 3.8e-35 152.9 137 57.7
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 5.0e-35 152.5 276 38.4
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 8.5e-35 151.8 182 73.1
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 8.5e-35 151.8 134 56.7
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 5.5e-34 149.1 297 49.5
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.4e-34 148.3 192 56.8
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 2.1e-33 147.1 283 45.9
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.1e-29 134.8 136 54.4
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.1e-29 134.8 132 54.5
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 2.2e-27 127.1 116 56.9
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 8.5e-27 125.2 285 34.4
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 2.1e-25 120.6 277 36.5
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 4.7e-25 119.4 262 38.2
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 4.7e-25 119.4 248 33.9
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.0e-24 118.2 292 36.3
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 1.3e-22 111.3 189 57.1
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 2.8e-22 110.2 242 37.2
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.8e-22 109.4 105 61.0
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.8e-22 109.4 105 61.0
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 1.2e-20 104.8 288 31.9
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 3.8e-19 99.8 207 34.8
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 1.1e-18 98.2 118 54.2
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.1e-18 98.2 123 48.8
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 5.5e-18 95.9 197 37.6
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.4e-16 91.3 111 46.8
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.3e-16 90.5 65 66.2
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.4e-13 80.5 67 58.2
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.1e-13 79.7 55 70.9
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 5.9e-12 75.9 111 50.5
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.0e-11 75.1 63 68.3
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.2e-11 73.9 82 59.8
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.5e-10 70.5 242 28.9
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.4e-08 64.7 99 47.5
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.4e-08 64.7 53 62.3
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.8e-08 62.4 96 47.9
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 1.5e-07 61.2 59 66.1
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 7.5e-07 58.9 265 27.5
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 1.3e-06 58.2 36 72.2


User provided reference genes

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