Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 1.9e-251 872.1 459 100.0
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 1.9e-251 872.1 459 100.0
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 1.9e-251 872.1 459 100.0
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 3.3e-243 844.7 460 96.5
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 7.3e-243 843.6 460 96.3
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 2.0e-240 835.5 461 95.4
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 8.9e-233 810.1 461 91.5
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 4.4e-232 807.7 461 91.3
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 4.4e-232 807.7 461 92.2
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 1.1e-230 803.1 459 91.7
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 8.6e-228 793.5 461 90.2
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 1.9e-227 792.3 462 89.8
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 6.8e-225 783.9 461 89.8
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 4.3e-195 684.9 464 74.6
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 2.8e-194 682.2 461 75.1
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 1.4e-193 679.9 464 75.6
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 5.3e-193 677.9 462 75.3
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 1.5e-192 676.4 461 76.6
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 2.6e-192 675.6 461 74.4
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 4.5e-192 674.9 465 74.2
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.0e-191 673.7 464 73.7
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 2.9e-191 672.2 462 76.0
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 1.9e-190 669.5 459 73.6
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 3.2e-190 668.7 462 73.2
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 4.2e-190 668.3 464 74.6
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 2.1e-189 666.0 462 72.9
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 4.6e-189 664.8 463 76.0
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 6.1e-189 664.5 464 72.4
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 7.9e-189 664.1 464 75.9
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 1.8e-188 662.9 459 73.2
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 2.3e-188 662.5 460 74.1
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 3.0e-188 662.1 469 75.1
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 6.7e-188 661.0 464 72.6
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 3.3e-187 658.7 464 75.2
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 4.3e-187 658.3 464 74.6
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 4.3e-187 658.3 465 74.8
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 4.3e-187 658.3 464 75.0
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 5.7e-187 657.9 464 72.6
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 1.6e-186 656.4 464 72.2
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 2.2e-186 656.0 464 75.2
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 2.8e-186 655.6 465 74.4
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 4.8e-186 654.8 464 74.4
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 6.3e-186 654.4 464 73.1
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 6.3e-186 654.4 464 72.0
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 8.2e-186 654.1 467 73.9
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 1.1e-185 653.7 416 78.1
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 2.4e-185 652.5 459 71.5
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 9.1e-185 650.6 464 74.1
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 4.5e-184 648.3 464 71.3
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 4.5e-184 648.3 465 72.0
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.3e-183 646.7 464 71.1
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 2.9e-183 645.6 465 71.6
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 8.5e-183 644.0 464 73.1
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.1e-182 643.7 464 72.0
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 1.4e-182 643.3 459 73.6
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 1.4e-182 643.3 467 72.2
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 2.5e-182 642.5 455 73.4
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 5.5e-182 641.3 459 70.8
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 1.2e-181 640.2 465 73.8
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.2e-181 640.2 463 71.7
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.6e-181 639.8 464 72.4
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 1.6e-181 639.8 459 71.0
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 3.6e-181 638.6 463 71.5
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 7.9e-181 637.5 468 71.2
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 3.9e-180 635.2 421 75.3
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 5.1e-180 634.8 479 67.2
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 8.8e-180 634.0 465 71.2
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 1.1e-179 633.6 465 73.1
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.6e-179 632.5 469 72.7
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 4.4e-179 631.7 425 74.4
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 7.4e-179 630.9 487 69.0
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 9.7e-179 630.6 465 73.5
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 3.7e-178 628.6 462 69.5
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 6.3e-178 627.9 425 73.6
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.8e-177 626.3 463 70.4
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 5.3e-177 624.8 464 70.9
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 9.1e-177 624.0 459 72.3
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 9.1e-177 624.0 467 72.2
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 1.2e-176 623.6 466 70.6
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 5.9e-176 621.3 487 68.4
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 5.9e-176 621.3 468 68.8
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.3e-175 620.2 459 72.1
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 2.9e-175 619.0 510 64.7
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 5.0e-175 618.2 462 71.6
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 3.2e-174 615.5 467 68.3
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 7.2e-174 614.4 463 70.4
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 2.7e-173 612.5 469 70.6
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 3.6e-173 612.1 469 70.6
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 2.3e-172 609.4 492 66.3
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 5.2e-172 608.2 469 70.1
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 6.7e-172 607.8 470 67.9
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 1.5e-171 606.7 464 68.8
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 2.6e-171 605.9 467 68.1
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 7.4e-171 604.4 463 67.6
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 4.8e-170 601.7 465 69.9
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 1.8e-169 599.7 403 73.2
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 3.1e-169 599.0 460 67.2
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 7.0e-169 597.8 449 67.9
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.6e-168 596.7 417 71.7
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.6e-168 595.9 464 69.6
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 3.5e-168 595.5 468 67.1
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 6.1e-165 584.7 416 70.4
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 4.4e-163 578.6 454 66.5
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 2.8e-162 575.9 398 71.9
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 9.1e-161 570.9 457 64.3
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 1.1e-158 563.9 462 65.4
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 2.0e-155 553.1 394 71.6
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 5.7e-155 551.6 416 65.4
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 3.1e-153 545.8 456 62.5
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 2.0e-152 543.1 415 68.4
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.6e-139 499.6 380 70.0
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 1.3e-130 470.7 401 58.4
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 1.1e-129 467.6 322 73.3
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 5.4e-129 465.3 401 56.6
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 1.7e-127 460.3 412 55.8
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 1.9e-110 403.7 459 49.7
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 4.4e-107 392.5 268 82.1
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 3.4e-99 366.3 275 65.1
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 3.5e-96 356.3 410 49.0
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 6.2e-93 345.5 253 78.7
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 1.4e-92 344.4 253 78.3
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 1.3e-90 337.8 541 36.6
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.4e-89 334.3 261 71.3
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 6.5e-74 282.3 188 75.5
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 4.2e-49 199.9 207 56.5
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 3.6e-48 196.8 148 73.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 3.7e-45 186.8 145 66.2
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 6.5e-42 176.0 292 41.8
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 1.8e-39 167.9 162 60.5
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 2.0e-35 154.5 122 66.4
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 5.2e-31 139.8 376 29.3
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 8.6e-26 122.5 60 98.3
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 6.2e-16 89.7 59 69.5
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 3.1e-15 87.4 70 68.6
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 6.8e-15 86.3 57 71.9
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 1.2e-08 65.5 65 55.4


User provided reference genes

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