Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27741 Brassica carinata HOM05D003802 ORTHO05D004829 4.3e-74 281.2 137 100.0
BcaC06g36577 Brassica carinata HOM05D003802 ORTHO05D004829 5.8e-71 270.8 137 96.4
BcaC05g29883 Brassica carinata HOM05D003802 ORTHO05D004829 7.4e-66 253.8 128 95.3
C05p37270 Brassica napus HOM05D003802 ORTHO05D004829 4.8e-65 251.1 122 100.0
BolC5t35018H Brassica oleracea HOM05D003802 ORTHO05D004829 2.6e-63 245.4 127 92.9
BolC5t35016H Brassica oleracea HOM05D003802 ORTHO05D004829 2.3e-59 232.3 127 91.3
BcaB01g00473 Brassica carinata HOM05D003802 ORTHO05D004829 2.5e-58 228.8 122 92.6
A09p44980 Brassica napus HOM05D003802 ORTHO05D004829 2.5e-58 228.8 122 92.6
C08p27060 Brassica napus HOM05D003802 ORTHO05D004829 2.5e-58 228.8 122 92.6
BolC8t50321H Brassica oleracea HOM05D003802 ORTHO05D004829 2.5e-58 228.8 122 92.6
BraA09t39958Z Brassica rapa HOM05D003802 ORTHO05D004829 2.5e-58 228.8 122 92.6
BcaB01g00413 Brassica carinata HOM05D003802 ORTHO05D004829 7.4e-58 227.3 122 91.8
BcaC02g09302 Brassica carinata HOM05D003802 ORTHO05D004829 3.1e-56 221.9 122 88.5
C04p41140 Brassica napus HOM05D003802 ORTHO05D004829 3.1e-56 221.9 122 88.5
BolC4t25697H Brassica oleracea HOM05D003802 ORTHO05D004829 3.1e-56 221.9 122 88.5
BcaB02g08601 Brassica carinata HOM05D003802 ORTHO05D004829 6.9e-56 220.7 122 87.7
A04p07490 Brassica napus HOM05D003802 ORTHO05D004829 1.5e-55 219.5 122 87.7
BraA04t16444Z Brassica rapa HOM05D003802 ORTHO05D004829 1.5e-55 219.5 122 87.7
Sp5g10430 Schrenkiella parvula HOM05D003802 ORTHO05D004829 5.5e-53 211.1 122 84.4
Thhalv10010388m.g Eutrema salsugineum HOM05D003802 ORTHO05D004829 2.7e-52 208.8 122 82.8
AT3G51840 Arabidopsis thaliana HOM05D003802 ORTHO05D004829 1.3e-51 206.5 122 82.0
AL5G32300 Arabidopsis lyrata HOM05D003802 ORTHO05D004829 1.8e-51 206.1 122 81.1
Carub.0005s1819 Capsella rubella HOM05D003802 ORTHO05D004829 5.1e-51 204.5 122 82.8
THA.LOC104805957 Tarenaya hassleriana HOM05D003802 ORTHO05D004829 7.4e-50 200.7 122 79.5
CARHR161470 Cardamine hirsuta HOM05D003802 ORTHO05D004829 2.8e-49 198.7 122 78.7
Eucgr.A00529 Eucalyptus grandis HOM05D003802 ORTHO05D004829 2.0e-47 192.6 122 75.4
Aa31LG5G23700 Aethionema arabicum HOM05D003802 ORTHO05D004829 4.5e-47 191.4 122 75.4
FAN05G2463 Fragaria x ananassa HOM05D003802 ORTHO05D004829 1.0e-46 190.3 122 74.6
FvH4_6g11280 Fragaria vesca HOM05D003802 ORTHO05D004829 1.3e-46 189.9 122 74.6
FAN14G2331 Fragaria x ananassa HOM05D003802 ORTHO05D004829 1.3e-46 189.9 122 74.6
FAN14G4713 Fragaria x ananassa HOM05D003802 ORTHO05D004829 1.3e-46 189.9 122 74.6
TAR369G0012 Trochodendron aralioides HOM05D003802 ORTHO05D004829 1.3e-46 189.9 123 74.0
Prupe.6G279200 Prunus persica HOM05D003802 ORTHO05D004829 1.7e-46 189.5 122 74.6
Glyma.07G151500 Glycine max HOM05D003802 ORTHO05D004829 2.2e-46 189.1 122 72.1
Manes.08G093200 Manihot esculenta HOM05D003802 ORTHO05D004829 3.8e-46 188.3 122 71.3
Peaxi162Scf00009g00163 Petunia axillaris HOM05D003802 ORTHO05D004829 5.0e-46 188.0 123 72.4
CSS0032028 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 6.5e-46 187.6 122 69.7
CSS0036674 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 6.5e-46 187.6 122 69.7
Cpa.g.sc11.100 Carica papaya HOM05D003802 ORTHO05D004829 8.5e-46 187.2 122 72.1
Cfa017192 Carpinus fangiana HOM05D003802 ORTHO05D004829 8.5e-46 187.2 122 71.3
Haze_21019 Corylus avellana HOM05D003802 ORTHO05D004829 8.5e-46 187.2 122 71.3
Dinv01494 Davidia involucrata HOM05D003802 ORTHO05D004829 8.5e-46 187.2 122 72.1
Lj3C951G1 Lonicera japonica HOM05D003802 ORTHO05D004829 8.5e-46 187.2 123 72.4
Migut.J00147 Erythranthe guttata HOM05D003802 ORTHO05D004829 1.1e-45 186.8 123 74.8
SalBow5G1244 Salvia bowleyana HOM05D003802 ORTHO05D004829 1.9e-45 186.0 123 75.6
DCAR_015400 Daucus carota HOM05D003802 ORTHO05D004829 3.2e-45 185.3 123 71.5
CAN.G823.1 Capsicum annuum HOM05D003802 ORTHO05D004829 7.2e-45 184.1 123 69.9
Rhsim04G0127300 Rhododendron simsii HOM05D003802 ORTHO05D004829 7.2e-45 184.1 122 70.5
RcHm_v2.0_Chr3g0462821 Rosa chinensis HOM05D003802 ORTHO05D004829 7.2e-45 184.1 122 73.0
SalBow5G2900 Salvia bowleyana HOM05D003802 ORTHO05D004829 7.2e-45 184.1 123 75.6
SalBow5G3730 Salvia bowleyana HOM05D003802 ORTHO05D004829 7.2e-45 184.1 123 75.6
GSVIVG01011175001 Vitis vinifera HOM05D003802 ORTHO05D004829 7.2e-45 184.1 122 70.5
HanXRQChr11g0331731 Helianthus annuus HOM05D003802 ORTHO05D004829 1.2e-44 183.3 122 71.3
PGSC0003DMG400011023 Solanum tuberosum HOM05D003802 ORTHO05D004829 1.2e-44 183.3 123 69.9
COL.COLO4_14514 Corchorus olitorius HOM05D003802 ORTHO05D004829 1.6e-44 183.0 122 72.1
Glyma.18G202800 Glycine max HOM05D003802 ORTHO05D004829 1.6e-44 183.0 122 70.5
Lj3g0007770 Lotus japonicus HOM05D003802 ORTHO05D004829 1.6e-44 183.0 122 69.7
TWI74G0069 Tripterygium wilfordii HOM05D003802 ORTHO05D004829 1.6e-44 183.0 122 70.5
Lalb_Chr12g0207031 Lupinus albus HOM05D003802 ORTHO05D004829 2.1e-44 182.6 122 73.0
PGR031G1102 Punica granatum HOM05D003802 ORTHO05D004829 2.1e-44 182.6 122 70.5
BraA09t40009Z Brassica rapa HOM05D003802 ORTHO05D004829 2.7e-44 182.2 126 80.2
CSS0028267 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 2.7e-44 182.2 122 70.5
Ciclev10011934m.g Citrus clementina HOM05D003802 ORTHO05D004829 2.7e-44 182.2 122 72.1
MD04G1155700 Malus domestica HOM05D003802 ORTHO05D004829 2.7e-44 182.2 122 72.1
Medtr7g068850 Medicago truncatula HOM05D003802 ORTHO05D004829 3.6e-44 181.8 122 68.9
Nn2g13152 Nelumbo nucifera HOM05D003802 ORTHO05D004829 3.6e-44 181.8 123 68.3
Hma1.2p1_0362F.1_g136390 Hydrangea macrophylla HOM05D003802 ORTHO05D004829 4.6e-44 181.4 122 71.3
Solyc10g076600.2 Solanum lycopersicum HOM05D003802 ORTHO05D004829 4.6e-44 181.4 131 67.2
Solyc10g085200.2 Solanum lycopersicum HOM05D003802 ORTHO05D004829 4.6e-44 181.4 123 69.9
QL07p035231 Quercus lobata HOM05D003802 ORTHO05D004829 6.1e-44 181.0 122 69.7
Sopen10g028240 Solanum pennellii HOM05D003802 ORTHO05D004829 6.1e-44 181.0 131 67.2
PGSC0003DMG401019176 Solanum tuberosum HOM05D003802 ORTHO05D004829 6.1e-44 181.0 131 66.4
EL10Ac5g12547 Beta vulgaris HOM05D003802 ORTHO05D004829 1.0e-43 180.3 122 71.3
Gohir.D09G161600 Gossypium hirsutum HOM05D003802 ORTHO05D004829 1.0e-43 180.3 122 71.3
Gorai.006G183300 Gossypium raimondii HOM05D003802 ORTHO05D004829 1.0e-43 180.3 122 71.3
Sopen10g034670 Solanum pennellii HOM05D003802 ORTHO05D004829 1.0e-43 180.3 123 69.9
Thecc.05G013900 Theobroma cacao HOM05D003802 ORTHO05D004829 1.0e-43 180.3 122 70.5
Aa31LG10G9050 Aethionema arabicum HOM05D003802 ORTHO05D004829 1.4e-43 179.9 150 64.7
Sc07g0006670 Simmondsia chinensis HOM05D003802 ORTHO05D004829 1.4e-43 179.9 117 71.8
SGA_v2.0_scaffold95G28857 Striga asiatica HOM05D003802 ORTHO05D004829 1.4e-43 179.9 122 71.3
TWI53G0442 Tripterygium wilfordii HOM05D003802 ORTHO05D004829 1.4e-43 179.9 122 67.2
MSTRG.5566 Avicennia marina HOM05D003802 ORTHO05D004829 1.8e-43 179.5 122 69.7
CiPaw.10G157200 Carya illinoinensis HOM05D003802 ORTHO05D004829 1.8e-43 179.5 122 67.2
Nitab4.5_0000119g0070 Nicotiana tabacum HOM05D003802 ORTHO05D004829 1.8e-43 179.5 122 69.7
CAN.G243.8 Capsicum annuum HOM05D003802 ORTHO05D004829 5.1e-43 177.9 123 69.1
Sabra16G0114200 Salix brachista HOM05D003802 ORTHO05D004829 5.1e-43 177.9 122 69.7
Sed0011339 Sechium edule HOM05D003802 ORTHO05D004829 5.1e-43 177.9 122 70.5
Dinv09291 Davidia involucrata HOM05D003802 ORTHO05D004829 6.7e-43 177.6 122 70.5
MBI03_g24259_MAGBIO Magnolia biondii HOM05D003802 ORTHO05D004829 8.8e-43 177.2 122 69.7
Potri.016G118000 Populus trichocarpa HOM05D003802 ORTHO05D004829 8.8e-43 177.2 122 68.0
Cc06_g01200 Coffea canephora HOM05D003802 ORTHO05D004829 1.1e-42 176.8 123 66.7
Hund10994 Selenicereus undatus HOM05D003802 ORTHO05D004829 1.5e-42 176.4 125 68.0
AUR62030803 Chenopodium quinoa HOM05D003802 ORTHO05D004829 2.0e-42 176.0 122 69.7
Psat3g127160 Pisum sativum HOM05D003802 ORTHO05D004829 2.0e-42 176.0 122 68.0
Nitab4.5_0004107g0050 Nicotiana tabacum HOM05D003802 ORTHO05D004829 2.5e-42 175.6 123 68.3
Potri.006G101800 Populus trichocarpa HOM05D003802 ORTHO05D004829 2.5e-42 175.6 122 71.3
ECA236G0063 Erigeron canadensis HOM05D003802 ORTHO05D004829 3.3e-42 175.3 122 68.9
TPR.G8416 Trifolium pratense HOM05D003802 ORTHO05D004829 3.3e-42 175.3 122 67.2
arahy.Tifrunner.gnm1.ann1.0003EL Arachis hypogaea HOM05D003802 ORTHO05D004829 4.3e-42 174.9 122 68.0
arahy.Tifrunner.gnm1.ann1.DW8YXR Arachis hypogaea HOM05D003802 ORTHO05D004829 4.3e-42 174.9 122 68.0
MELO3C009153.2 Cucumis melo HOM05D003802 ORTHO05D004829 4.3e-42 174.9 122 67.2
Gohir.A09G166000 Gossypium hirsutum HOM05D003802 ORTHO05D004829 5.7e-42 174.5 122 68.9
Peaxi162Scf00014g00222 Petunia axillaris HOM05D003802 ORTHO05D004829 5.7e-42 174.5 123 68.3
CsaV3_3G033630 Cucumis sativus L. HOM05D003802 ORTHO05D004829 7.4e-42 174.1 122 68.0
Oeu038764.2 Olea europaea HOM05D003802 ORTHO05D004829 9.7e-42 173.7 142 64.1
PSO339G3660 Papaver somniferum HOM05D003802 ORTHO05D004829 2.2e-41 172.6 123 68.3
PSO384G3434 Papaver somniferum HOM05D003802 ORTHO05D004829 2.2e-41 172.6 123 68.3
CDE06G0316 Ceratophyllum demersum HOM05D003802 ORTHO05D004829 2.8e-41 172.2 122 65.6
Nitab4.5_0000770g0030 Nicotiana tabacum HOM05D003802 ORTHO05D004829 2.8e-41 172.2 148 58.1
HPP92_006763 Vanilla planifolia HOM05D003802 ORTHO05D004829 3.7e-41 171.8 123 65.9
Zm00001eb282120 Zea mays HOM05D003802 ORTHO05D004829 6.3e-41 171.0 122 66.4
Aqoxy4G02528 Aquilegia oxysepala HOM05D003802 ORTHO05D004829 1.1e-40 170.2 122 68.0
BcaC04g20180 Brassica carinata HOM05D003802 ORTHO05D004829 1.8e-40 169.5 136 70.6
Lalb_Chr03g0043201 Lupinus albus HOM05D003802 ORTHO05D004829 1.8e-40 169.5 122 63.1
Os01g0159400 Oryza sativa ssp. japonica HOM05D003802 ORTHO05D004829 2.4e-40 169.1 122 66.4
Atru.chr8.2601 Acer truncatum HOM05D003802 ORTHO05D004829 3.1e-40 168.7 122 64.8
BcaC04g20315 Brassica carinata HOM05D003802 ORTHO05D004829 5.3e-40 167.9 113 80.5
Phvul.010G076000 Phaseolus vulgaris HOM05D003802 ORTHO05D004829 5.3e-40 167.9 122 64.8
ClCG10G022250 Citrullus lanatus HOM05D003802 ORTHO05D004829 6.9e-40 167.5 132 63.6
Os05g0163700 Oryza sativa ssp. japonica HOM05D003802 ORTHO05D004829 1.5e-39 166.4 122 63.9
Lj1g0026208 Lotus japonicus HOM05D003802 ORTHO05D004829 2.6e-39 165.6 122 63.9
ATR0681G264 Amborella trichopoda HOM05D003802 ORTHO05D004829 4.5e-39 164.9 122 62.3
Glyma.03G056400 Glycine max HOM05D003802 ORTHO05D004829 1.3e-38 163.3 148 56.8
Ciclev10013381m.g Citrus clementina HOM05D003802 ORTHO05D004829 1.7e-38 162.9 125 62.4
Zm00001eb123620 Zea mays HOM05D003802 ORTHO05D004829 2.9e-38 162.2 122 63.1
CSS0000012 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 3.8e-38 161.8 122 62.3
CSS0006548 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 3.8e-38 161.8 122 62.3
CSS0018174 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 3.8e-38 161.8 122 62.3
Ciclev10013617m.g Citrus clementina HOM05D003802 ORTHO05D004829 1.1e-37 160.2 123 65.9
AagrBONN_evm.TU.Sc2ySwM_228.349 Anthoceros agrestis HOM05D003802 ORTHO05D004829 2.5e-37 159.1 125 60.0
Gorai.001G247400 Gossypium raimondii HOM05D003802 ORTHO05D004829 5.5e-37 157.9 122 64.8
SMO118G0494 Selaginella moellendorffii HOM05D003802 ORTHO05D004829 5.5e-37 157.9 117 64.1
Gohir.D13G095300 Gossypium hirsutum HOM05D003802 ORTHO05D004829 1.2e-36 156.8 122 64.8
Pp3c10_910 Physcomitrium patens HOM05D003802 ORTHO05D004829 1.2e-36 156.8 125 60.0
vmacro08883 Vaccinium macrocarpon HOM05D003802 ORTHO05D004829 2.1e-36 156.0 102 70.6
VMungo0331G1951 Vigna mungo HOM05D003802 ORTHO05D004829 2.1e-36 156.0 102 71.6
Gohir.A13G085701 Gossypium hirsutum HOM05D003802 ORTHO05D004829 3.6e-36 155.2 122 64.8
Mapoly0037s0018 Marchantia polymorpha HOM05D003802 ORTHO05D004829 7.9e-36 154.1 121 59.5
Duzib093G0744 Durio zibethinus HOM05D003802 ORTHO05D004829 1.4e-35 153.3 102 70.6
MD12G1170600 Malus domestica HOM05D003802 ORTHO05D004829 1.8e-35 152.9 103 72.8
Lj3C950G12 Lonicera japonica HOM05D003802 ORTHO05D004829 2.0e-34 149.4 103 70.9
Pp3c3_8340 Physcomitrium patens HOM05D003802 ORTHO05D004829 2.6e-34 149.1 125 55.2
A09p45480 Brassica napus HOM05D003802 ORTHO05D020190 5.7e-34 147.9 81 91.4
CBR_g4338 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-33 146.4 122 59.0
CiPaw.09G210700 Carya illinoinensis HOM05D003802 ORTHO05D004829 1.2e-31 140.2 113 55.8
Lsat_1_v5_gn_8_101681 Lactuca sativa HOM05D003802 ORTHO05D004829 3.5e-31 138.7 110 61.8
Actinidia20743 Actinidia chinensis HOM05D003802 ORTHO05D004829 3.8e-30 135.2 78 79.5
BcaC05g29879 Brassica carinata HOM05D003802 ORTHO05D004829 6.5e-30 134.4 83 80.7
C09p45050 Brassica napus HOM05D003802 ORTHO05D020190 2.5e-29 132.5 68 92.6
Cre16.g695100 Chlamydomonas reinhardtii HOM05D003802 ORTHO05D004829 2.5e-29 132.5 116 54.3
SEGI_03618 Sequoiadendron giganteum HOM05D003802 ORTHO05D004829 2.1e-28 129.4 102 56.9
MD12G1169900 Malus domestica HOM05D003802 ORTHO05D004829 1.0e-27 127.1 78 79.5
unitig_736.g22759 Utricularia gibba HOM05D003802 ORTHO05D004829 2.3e-27 125.9 78 74.4
Duzib106G0050 Durio zibethinus HOM05D003802 ORTHO05D004829 2.8e-25 119.0 128 54.7
CSS0035995 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 3.1e-24 115.5 122 53.3
A06p28940 Brassica napus HOM05D003802 ORTHO05D020190 2.6e-23 112.5 81 71.6
BraA06t25839Z Brassica rapa HOM05D003802 ORTHO05D020190 2.6e-23 112.5 81 71.6
BraA03t15488Z Brassica rapa HOM05D003802 ORTHO05D020190 1.9e-21 106.3 72 73.6
Ah.12g058740 Amaranthus hybridus HOM05D003802 ORTHO05D004829 1.8e-19 99.8 143 44.1
AagrBONN_evm.TU.Sc2ySwM_228.298 Anthoceros agrestis HOM05D003802 ORTHO05D004829 1.3e-17 93.6 74 56.8
FAN09G1187 Fragaria x ananassa HOM05D003802 ORTHO05D004829 3.7e-17 92.0 113 46.9
MBI18_g32053_MAGBIO Magnolia biondii HOM05D003802 ORTHO05D004829 5.5e-13 78.2 68 58.8
MD00G1080100 Malus domestica HOM05D003802 ORTHO05D004829 8.0e-12 74.3 68 55.9
Nn2g10872 Nelumbo nucifera HOM05D003802 ORTHO05D020190 8.8e-11 70.9 55 61.8
VMungo1383G0297 Vigna mungo HOM05D003802 ORTHO05D004829 5.4e-08 61.6 43 67.4


User provided reference genes

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