Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27507 Brassica carinata HOM05D003431 ORTHO05D014368 6.4e-31 136.7 67 100.0
BcaC07g37686 Brassica carinata HOM05D003431 ORTHO05D032197 3.9e-20 100.9 54 90.7
BolC6t38529H Brassica oleracea HOM05D003431 ORTHO05D014368 5.1e-20 100.5 60 80.0
BcaB08g35512 Brassica carinata HOM05D003431 ORTHO05D014368 9.6e-19 96.3 57 82.5
CARHR026300 Cardamine hirsuta HOM05D003431 ORTHO05D005152 2.8e-18 94.7 65 72.3
BcaC05g26690 Brassica carinata HOM05D003431 ORTHO05D005152 3.6e-18 94.4 60 78.3
BcaB03g12039 Brassica carinata HOM05D003431 ORTHO05D005152 6.2e-18 93.6 60 78.3
A07p12440 Brassica napus HOM05D003431 ORTHO05D005152 8.1e-18 93.2 60 78.3
BraA07t29025Z Brassica rapa HOM05D003431 ORTHO05D005152 8.1e-18 93.2 60 78.3
BcaC05g26486 Brassica carinata HOM05D003431 ORTHO05D005152 1.1e-17 92.8 60 76.7
BcaC06g35235 Brassica carinata HOM05D003431 ORTHO05D005152 1.1e-17 92.8 60 76.7
A09p39090 Brassica napus HOM05D003431 ORTHO05D005152 1.1e-17 92.8 60 76.7
C05p25340 Brassica napus HOM05D003431 ORTHO05D005152 1.1e-17 92.8 60 76.7
C07p18390 Brassica napus HOM05D003431 ORTHO05D005152 1.1e-17 92.8 60 76.7
BraA09t39409Z Brassica rapa HOM05D003431 ORTHO05D005152 1.1e-17 92.8 60 76.7
Sp1g23030 Schrenkiella parvula HOM05D003431 ORTHO05D005152 1.1e-17 92.8 60 76.7
BolC5t31269H Brassica oleracea HOM05D003431 ORTHO05D005152 1.8e-17 92.0 60 76.7
BolC7t42349H Brassica oleracea HOM05D003431 ORTHO05D005152 2.4e-17 91.7 60 75.0
BcaC01g01674 Brassica carinata HOM05D003431 ORTHO05D005152 3.1e-17 91.3 60 75.0
C03p73140 Brassica napus HOM05D003431 ORTHO05D005152 3.1e-17 91.3 60 75.0
BolC3t19610H Brassica oleracea HOM05D003431 ORTHO05D005152 3.1e-17 91.3 60 75.0
BraA08t34627Z Brassica rapa HOM05D003431 ORTHO05D005152 3.1e-17 91.3 60 75.0
Aa31LG7G9280 Aethionema arabicum HOM05D003431 ORTHO05D005152 2.0e-16 88.6 60 73.3
AL1G40100 Arabidopsis lyrata HOM05D003431 ORTHO05D005152 2.0e-16 88.6 60 73.3
A08p26810 Brassica napus HOM05D003431 ORTHO05D005152 2.6e-16 88.2 60 73.3
AT1G25260 Arabidopsis thaliana HOM05D003431 ORTHO05D005152 5.8e-16 87.0 60 71.7
BcaB03g14023 Brassica carinata HOM05D003431 ORTHO05D005152 5.8e-16 87.0 68 69.1
Thhalv10008680m.g Eutrema salsugineum HOM05D003431 ORTHO05D005152 1.7e-15 85.5 60 71.7
C05p02190 Brassica napus HOM05D003431 ORTHO05D014368 1.9e-14 82.0 60 71.7
Atru.chr6.1079 Acer truncatum HOM05D003431 ORTHO05D005152 2.1e-13 78.6 60 65.0
Carub.0001s2531 Capsella rubella HOM05D003431 ORTHO05D005152 2.1e-13 78.6 65 58.5
Atru.chr6.1030 Acer truncatum HOM05D003431 ORTHO05D005152 2.7e-13 78.2 60 65.0
Lsat_1_v5_gn_7_77981 Lactuca sativa HOM05D003431 ORTHO05D005152 4.6e-13 77.4 60 61.7
TWI14G0641 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 6.0e-13 77.0 60 66.7
BolC5t29949H Brassica oleracea HOM05D003431 ORTHO05D005152 7.9e-13 76.6 71 63.4
CANSAT11G1865 Cannabis sativa HOM05D003431 ORTHO05D005152 7.9e-13 76.6 60 65.0
Thecc.02G041300 Theobroma cacao HOM05D003431 ORTHO05D005152 7.9e-13 76.6 60 60.0
TWI23G0077 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 7.9e-13 76.6 60 68.3
MSTRG.16533 Avicennia marina HOM05D003431 ORTHO05D005152 1.0e-12 76.3 60 60.0
BolC5t28997H Brassica oleracea HOM05D003431 ORTHO05D014368 1.3e-12 75.9 57 70.2
MD15G1418800 Malus domestica HOM05D003431 ORTHO05D005152 1.3e-12 75.9 60 61.7
Manes.07G013300 Manihot esculenta HOM05D003431 ORTHO05D005152 1.8e-12 75.5 60 60.0
QL02p098641 Quercus lobata HOM05D003431 ORTHO05D005152 1.8e-12 75.5 60 61.7
MD08G1225200 Malus domestica HOM05D003431 ORTHO05D005152 2.3e-12 75.1 60 61.7
Peaxi162Scf00011g00014 Petunia axillaris HOM05D003431 ORTHO05D005152 2.3e-12 75.1 60 61.7
Aqoxy4G02442 Aquilegia oxysepala HOM05D003431 ORTHO05D005152 3.0e-12 74.7 60 61.7
Duzib132G0664 Durio zibethinus HOM05D003431 ORTHO05D005152 3.0e-12 74.7 60 56.7
Duzib248G1379 Durio zibethinus HOM05D003431 ORTHO05D005152 3.0e-12 74.7 60 60.0
SalBow6G0908 Salvia bowleyana HOM05D003431 ORTHO05D005152 3.0e-12 74.7 60 60.0
Cpa.g.sc2.27 Carica papaya HOM05D003431 ORTHO05D005152 3.9e-12 74.3 60 61.7
Ciclev10002376m.g Citrus clementina HOM05D003431 ORTHO05D005152 3.9e-12 74.3 60 63.3
CsaV3_2G018120 Cucumis sativus L. HOM05D003431 ORTHO05D005152 3.9e-12 74.3 60 60.0
THA.LOC104807949 Tarenaya hassleriana HOM05D003431 ORTHO05D005152 3.9e-12 74.3 60 61.7
MBI15_g28822_MAGBIO Magnolia biondii HOM05D003431 ORTHO05D005152 5.1e-12 73.9 60 60.0
Oeu000195.1 Olea europaea HOM05D003431 ORTHO05D005152 5.1e-12 73.9 60 61.7
TAR636G0765 Trochodendron aralioides HOM05D003431 ORTHO05D005152 5.1e-12 73.9 60 58.3
GSVIVG01023018001 Vitis vinifera HOM05D003431 ORTHO05D005152 5.1e-12 73.9 60 58.3
Gohir.A01G176900 Gossypium hirsutum HOM05D003431 ORTHO05D005152 6.7e-12 73.6 60 56.7
Gohir.D01G167700 Gossypium hirsutum HOM05D003431 ORTHO05D005152 6.7e-12 73.6 60 56.7
Gorai.002G208400 Gossypium raimondii HOM05D003431 ORTHO05D005152 6.7e-12 73.6 60 56.7
FAN04G1904 Fragaria x ananassa HOM05D003431 ORTHO05D005152 8.7e-12 73.2 60 60.0
RcHm_v2.0_Chr7g0224251 Rosa chinensis HOM05D003431 ORTHO05D005152 1.1e-11 72.8 60 58.3
Sc11g0006640 Simmondsia chinensis HOM05D003431 ORTHO05D005152 1.1e-11 72.8 60 61.7
DCAR_013995 Daucus carota HOM05D003431 ORTHO05D005152 1.5e-11 72.4 60 58.3
Manes.10G132200 Manihot esculenta HOM05D003431 ORTHO05D005152 1.5e-11 72.4 60 60.0
TAR633G0411 Trochodendron aralioides HOM05D003431 ORTHO05D005152 1.5e-11 72.4 60 56.7
Ca_00090_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 1.9e-11 72.0 59 57.6
Ca_29929_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 1.9e-11 72.0 59 57.6
FvH4_5g30060 Fragaria vesca HOM05D003431 ORTHO05D005152 1.9e-11 72.0 60 58.3
FAN08G2387 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.9e-11 72.0 60 58.3
FAN13G1098 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.9e-11 72.0 60 58.3
FAN18G1423 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.9e-11 72.0 60 58.3
SHI16687 Sapria himalayana HOM05D003431 ORTHO05D005152 1.9e-11 72.0 60 58.3
Sed0002836 Sechium edule HOM05D003431 ORTHO05D005152 1.9e-11 72.0 60 56.7
Sed0006026 Sechium edule HOM05D003431 ORTHO05D005152 1.9e-11 72.0 60 56.7
Migut.B00667 Erythranthe guttata HOM05D003431 ORTHO05D005152 2.5e-11 71.6 65 55.4
Actinidia39056 Actinidia chinensis HOM05D003431 ORTHO05D005152 3.3e-11 71.2 60 56.7
CiPaw.05G042700 Carya illinoinensis HOM05D003431 ORTHO05D005152 3.3e-11 71.2 60 58.3
Haze_13054 Corylus avellana HOM05D003431 ORTHO05D005152 3.3e-11 71.2 60 58.3
ECA236G3864 Erigeron canadensis HOM05D003431 ORTHO05D005152 3.3e-11 71.2 60 58.3
Cfa014508 Carpinus fangiana HOM05D003431 ORTHO05D005152 4.3e-11 70.9 60 58.3
HanXRQChr01g0021831 Helianthus annuus HOM05D003431 ORTHO05D005152 5.6e-11 70.5 60 58.3
Hma1.2p1_0557F.1_g178330 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 5.6e-11 70.5 60 58.3
Hma1.2p1_0557F.1_g178340 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 5.6e-11 70.5 60 58.3
Hma1.2p1_2850F.1_g329406 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 5.6e-11 70.5 60 58.3
Lj6g0011327 Lotus japonicus HOM05D003431 ORTHO05D005152 5.6e-11 70.5 59 57.6
Oeu026055.1 Olea europaea HOM05D003431 ORTHO05D005152 5.6e-11 70.5 60 56.7
Psat1g220040 Pisum sativum HOM05D003431 ORTHO05D005152 5.6e-11 70.5 59 57.6
unitig_22.g6119 Utricularia gibba HOM05D003431 ORTHO05D005152 5.6e-11 70.5 60 58.3
Nn2g13208 Nelumbo nucifera HOM05D003431 ORTHO05D005152 7.4e-11 70.1 60 58.3
ATR0085G001 Amborella trichopoda HOM05D003431 ORTHO05D014368 9.6e-11 69.7 60 55.0
ATR0174G027 Amborella trichopoda HOM05D003431 ORTHO05D005152 9.6e-11 69.7 60 55.0
SGA_v2.0_scaffold1G00326 Striga asiatica HOM05D003431 ORTHO05D005152 9.6e-11 69.7 60 55.0
arahy.Tifrunner.gnm1.ann1.I5HCXG Arachis hypogaea HOM05D003431 ORTHO05D005152 1.3e-10 69.3 60 56.7
A05p19340 Brassica napus HOM05D003431 ORTHO05D014368 1.3e-10 69.3 54 68.5
CSS0006665 Camellia sinensis var. sinensis HOM05D003431 ORTHO05D005152 1.3e-10 69.3 60 55.0
HanXRQChr03g0066511 Helianthus annuus HOM05D003431 ORTHO05D005152 1.3e-10 69.3 60 56.7
PSO170G4153 Papaver somniferum HOM05D003431 ORTHO05D005152 1.3e-10 69.3 60 55.0
Prupe.1G562900 Prunus persica HOM05D003431 ORTHO05D005152 1.3e-10 69.3 60 56.7
arahy.Tifrunner.gnm1.ann1.N8P1ZJ Arachis hypogaea HOM05D003431 ORTHO05D005152 1.6e-10 68.9 60 56.7
Glyma.08G184300 Glycine max HOM05D003431 ORTHO05D005152 1.6e-10 68.9 60 56.7
Potri.001G460100 Populus trichocarpa HOM05D003431 ORTHO05D005152 1.6e-10 68.9 60 55.0
Cc02_g22270 Coffea canephora HOM05D003431 ORTHO05D005152 2.1e-10 68.6 60 55.0
Glyma.15G048200 Glycine max HOM05D003431 ORTHO05D005152 2.1e-10 68.6 60 56.7
SGA_v2.0_scaffold110G31286 Striga asiatica HOM05D003431 ORTHO05D005152 2.1e-10 68.6 60 55.0
BraA04t16596Z Brassica rapa HOM05D003431 ORTHO05D014368 2.8e-10 68.2 36 88.9
CiPaw.06G149000 Carya illinoinensis HOM05D003431 ORTHO05D005152 3.7e-10 67.8 60 56.7
Dinv24261 Davidia involucrata HOM05D003431 ORTHO05D005152 3.7e-10 67.8 60 51.7
Sabra11G0143500 Salix brachista HOM05D003431 ORTHO05D005152 4.8e-10 67.4 60 53.3
SEGI_29948 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 4.8e-10 67.4 60 53.3
Solyc01g104470.3 Solanum lycopersicum HOM05D003431 ORTHO05D005152 4.8e-10 67.4 60 55.0
PGSC0003DMG400023745 Solanum tuberosum HOM05D003431 ORTHO05D005152 4.8e-10 67.4 60 55.0
VMungo0540G2199 Vigna mungo HOM05D003431 ORTHO05D005152 4.8e-10 67.4 60 56.7
Nitab4.5_0010140g0020 Nicotiana tabacum HOM05D003431 ORTHO05D005152 6.2e-10 67.0 60 55.0
Sabra16G0311800 Salix brachista HOM05D003431 ORTHO05D005152 6.2e-10 67.0 60 53.3
Lj9A308T36 Lonicera japonica HOM05D003431 ORTHO05D005152 8.2e-10 66.6 60 51.7
Medtr2g007780 Medicago truncatula HOM05D003431 ORTHO05D005152 8.2e-10 66.6 60 55.0
PSO339G0293 Papaver somniferum HOM05D003431 ORTHO05D005152 8.2e-10 66.6 60 53.3
PSO801G0645 Papaver somniferum HOM05D003431 ORTHO05D005152 8.2e-10 66.6 60 53.3
Phvul.006G212200 Phaseolus vulgaris HOM05D003431 ORTHO05D005152 8.2e-10 66.6 60 55.0
Potri.011G156300 Populus trichocarpa HOM05D003431 ORTHO05D005152 8.2e-10 66.6 60 53.3
Sopen01g046970 Solanum pennellii HOM05D003431 ORTHO05D005152 1.1e-09 66.2 60 53.3
BcaC08g45659 Brassica carinata HOM05D003431 ORTHO05D014368 1.4e-09 65.9 35 88.6
PSO017G6291 Papaver somniferum HOM05D003431 ORTHO05D005152 1.4e-09 65.9 60 53.3
Lsat_1_v5_gn_9_116360 Lactuca sativa HOM05D003431 ORTHO05D005152 1.8e-09 65.5 60 55.0
vmacro01777 Vaccinium macrocarpon HOM05D003431 ORTHO05D005152 1.8e-09 65.5 60 55.0
Eucgr.I02710 Eucalyptus grandis HOM05D003431 ORTHO05D005152 2.4e-09 65.1 60 55.0
AagrBONN_evm.TU.Sc2ySwM_369.396 Anthoceros agrestis HOM05D003431 ORTHO05D005152 3.1e-09 64.7 60 50.0
Rhsim11G0131700 Rhododendron simsii HOM05D003431 ORTHO05D005152 3.1e-09 64.7 60 48.3
C06p34150 Brassica napus HOM05D003431 ORTHO05D014368 4.0e-09 64.3 34 88.2
CARHR057180 Cardamine hirsuta HOM05D003431 ORTHO05D014368 4.0e-09 64.3 36 83.3
PGR142G4046 Punica granatum HOM05D003431 ORTHO05D005152 5.3e-09 63.9 60 51.7
BraA05t20823Z Brassica rapa HOM05D003431 ORTHO05D014368 9.0e-09 63.2 42 76.2
Lalb_Chr18g0060821 Lupinus albus HOM05D003431 ORTHO05D005152 9.0e-09 63.2 60 50.0
AUR62020868 Chenopodium quinoa HOM05D003431 ORTHO05D005152 1.2e-08 62.8 59 52.5
TPR.G39937 Trifolium pratense HOM05D003431 ORTHO05D005152 1.2e-08 62.8 60 51.7
EL10Ac3g07449 Beta vulgaris HOM05D003431 ORTHO05D005152 1.5e-08 62.4 59 52.5
AUR62018551 Chenopodium quinoa HOM05D003431 ORTHO05D005152 1.5e-08 62.4 59 52.5
Os11g0105400 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 1.5e-08 62.4 59 50.8
Hund24426 Selenicereus undatus HOM05D003431 ORTHO05D005152 1.5e-08 62.4 60 51.7
ClCG02G000650 Citrullus lanatus HOM05D003431 ORTHO05D005152 2.0e-08 62.0 66 53.0
Mapoly0015s0017 Marchantia polymorpha HOM05D003431 ORTHO05D005152 2.0e-08 62.0 60 50.0
CDE12G0598 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 2.6e-08 61.6 60 46.7
Os12g0105200 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 2.6e-08 61.6 59 50.8
Zm00001eb094240 Zea mays HOM05D003431 ORTHO05D005152 2.6e-08 61.6 64 46.9
Hma1.2p1_0217F.1_g091920 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 3.4e-08 61.2 57 47.4
SMO367G0584 Selaginella moellendorffii HOM05D003431 ORTHO05D005152 3.4e-08 61.2 60 50.0
Zm00001eb163260 Zea mays HOM05D003431 ORTHO05D005152 4.5e-08 60.8 59 49.2
CDE06G1320 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 5.8e-08 60.5 60 48.3
HPP92_026977 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.0e-07 59.7 60 50.0
A02p15310 Brassica napus HOM05D003431 ORTHO05D027670 6.5e-07 57.0 47 61.7
A04p21520 Brassica napus HOM05D003431 ORTHO05D027670 6.5e-07 57.0 47 61.7
C07p26410 Brassica napus HOM05D003431 ORTHO05D027670 1.1e-06 56.2 47 61.7
HPP92_015419 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.1e-06 56.2 60 48.3
BcaC06g34618 Brassica carinata HOM05D003431 ORTHO05D027670 1.4e-06 55.8 45 64.4
Pp3c11_25500 Physcomitrium patens HOM05D003431 ORTHO05D005152 1.4e-06 55.8 60 46.7


User provided reference genes

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