Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 4.7e-103 377.9 189 100.0
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 4.4e-53 211.8 153 71.9
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 4.4e-53 211.8 153 71.9
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.7e-52 209.9 155 69.7
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 3.7e-52 208.8 153 71.2
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 3.7e-52 208.8 153 71.2
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 6.4e-52 208.0 155 69.0
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-51 207.2 155 69.7
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.1e-51 207.2 153 70.6
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.4e-51 206.8 155 69.0
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.9e-51 206.5 155 69.0
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 4.1e-51 205.3 155 68.4
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 2.7e-50 202.6 155 68.4
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.1e-47 193.0 157 66.2
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.4e-46 190.3 155 64.5
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.1e-46 189.1 155 65.2
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.2e-45 187.2 153 64.7
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 3.2e-43 179.1 155 59.4
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 4.6e-42 175.3 155 58.1
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.0e-41 174.1 155 58.1
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 3.6e-39 165.6 153 58.2
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 5.3e-38 161.8 153 55.6
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.2e-37 160.6 153 54.9
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.2e-37 160.6 197 47.2
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.5e-37 160.2 153 53.6
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.6e-37 159.5 153 54.9
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 5.8e-37 158.3 153 54.2
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.3e-36 157.1 153 54.9
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.3e-36 157.1 152 53.9
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.2e-36 156.4 153 53.6
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.9e-36 156.0 153 53.6
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.9e-36 156.0 153 55.6
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 2.9e-36 156.0 157 52.9
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.9e-36 156.0 153 54.2
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 2.9e-36 156.0 155 52.9
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 4.9e-36 155.2 153 53.6
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 6.4e-36 154.8 155 53.5
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 8.4e-36 154.5 155 52.9
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 8.4e-36 154.5 153 52.3
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.1e-35 154.1 153 52.3
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.4e-35 153.7 155 51.6
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.4e-35 153.7 153 53.6
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 2.4e-35 152.9 155 52.3
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 3.2e-35 152.5 153 52.9
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 3.2e-35 152.5 153 52.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.2e-35 152.1 150 54.0
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 5.4e-35 151.8 153 51.0
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 5.4e-35 151.8 153 51.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 9.3e-35 151.0 158 51.3
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 9.3e-35 151.0 155 49.7
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 9.3e-35 151.0 153 51.6
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.2e-34 150.6 153 52.3
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 1.6e-34 150.2 153 54.2
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 2.1e-34 149.8 164 51.2
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.7e-34 149.4 149 53.7
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.7e-34 149.4 153 52.3
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.7e-34 149.4 153 52.3
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.7e-34 149.4 154 50.0
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.7e-34 149.4 155 51.0
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 2.7e-34 149.4 155 51.0
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 3.5e-34 149.1 153 53.6
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 3.5e-34 149.1 153 52.3
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 4.6e-34 148.7 153 50.3
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 4.6e-34 148.7 153 51.6
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.0e-34 148.3 153 52.9
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 6.0e-34 148.3 153 51.0
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 6.0e-34 148.3 153 52.9
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 6.0e-34 148.3 155 51.6
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 7.8e-34 147.9 164 50.6
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.0e-33 147.5 153 52.3
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.0e-33 147.5 152 51.3
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.3e-33 147.1 153 51.6
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.3e-33 147.1 152 50.7
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.3e-33 147.1 166 48.2
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.3e-33 147.1 166 48.2
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.7e-33 146.7 153 50.3
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.3e-33 146.4 153 51.0
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.3e-33 146.4 155 51.6
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 3.0e-33 146.0 152 48.7
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.1e-33 145.2 155 50.3
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 5.1e-33 145.2 152 50.0
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 6.6e-33 144.8 153 51.0
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.6e-33 144.8 139 55.4
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 6.6e-33 144.8 153 51.0
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 8.7e-33 144.4 154 50.6
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 8.7e-33 144.4 153 51.0
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 8.7e-33 144.4 152 49.3
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 8.7e-33 144.4 153 50.3
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.1e-32 144.1 153 49.0
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.1e-32 144.1 153 51.6
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.9e-32 143.3 153 51.0
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.5e-32 142.9 153 49.7
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.5e-32 142.9 153 50.3
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.3e-32 142.1 153 50.3
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 5.6e-32 141.7 155 47.7
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.6e-32 141.7 152 50.0
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 5.6e-32 141.7 155 48.4
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 7.3e-32 141.4 153 48.4
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 7.3e-32 141.4 153 50.3
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 7.3e-32 141.4 154 48.1
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 7.3e-32 141.4 153 49.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 7.3e-32 141.4 153 49.0
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 9.6e-32 141.0 155 48.4
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.3e-31 140.6 152 50.7
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.6e-31 140.2 153 49.0
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.8e-31 139.4 155 47.1
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 3.6e-31 139.0 153 51.0
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 6.2e-31 138.3 152 50.0
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.2e-31 138.3 153 49.7
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-30 137.5 153 50.3
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.8e-30 136.7 153 50.3
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.8e-30 136.7 153 49.7
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.8e-30 136.7 153 49.0
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.4e-30 136.3 152 49.3
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.1e-30 136.0 153 49.7
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 4.0e-30 135.6 156 49.4
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.3e-30 135.2 152 49.3
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 6.9e-30 134.8 153 49.7
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.9e-30 134.8 153 49.7
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.9e-30 134.8 153 49.7
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 7.6e-29 131.3 155 46.5
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 6.4e-28 128.3 155 47.1
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 8.4e-28 127.9 83 72.3
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.2e-26 124.0 83 69.9
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.1e-26 123.2 83 68.7
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.3e-25 120.6 85 68.2
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.8e-25 120.2 83 65.1
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.0e-25 119.4 157 43.9
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.9e-24 116.7 83 63.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.3e-24 115.9 194 38.1
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 3.3e-24 115.9 111 49.5
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 5.6e-24 115.2 152 42.1
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.6e-23 113.6 215 34.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 8.1e-23 111.3 117 53.0
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 8.1e-23 111.3 82 65.9
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 6.9e-22 108.2 153 37.9
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 6.9e-22 108.2 83 61.4
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.5e-21 107.1 154 39.6
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 9.3e-19 97.8 119 47.1
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.6e-18 97.1 116 45.7
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.1e-17 92.0 156 37.8
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 6.7e-17 91.7 155 35.5
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.1e-15 86.7 61 62.3
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.4e-14 83.2 163 33.7
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.6e-13 78.2 114 42.1
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 9.3e-11 71.2 154 30.5
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.7e-10 69.7 116 34.5
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.0e-09 67.8 49 69.4
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 3.9e-09 65.9 33 87.9
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 5.7e-08 62.0 33 81.8


User provided reference genes

Program Settings