Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 8.6e-177 623.6 335 100.0
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 8.4e-172 607.1 336 97.9
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 8.4e-172 607.1 336 97.9
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 1.6e-170 602.8 335 97.0
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 2.8e-167 592.0 333 95.2
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 3.1e-166 588.6 333 95.2
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 3.1e-166 588.6 337 94.7
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 2.0e-165 585.9 328 95.1
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 3.4e-165 585.1 333 94.6
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 7.6e-165 583.9 328 94.5
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 1.7e-164 582.8 335 94.3
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 2.9e-164 582.0 333 94.6
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 7.1e-163 577.4 335 93.7
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 2.7e-162 575.5 367 86.6
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 4.0e-158 561.6 330 92.1
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 6.7e-153 544.3 313 93.9
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 8.7e-153 543.9 307 93.5
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 1.3e-151 540.0 325 86.8
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 2.2e-140 502.7 293 90.4
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 1.6e-135 486.5 326 76.7
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 1.2e-133 480.3 339 76.1
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 3.4e-133 478.8 334 76.3
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 5.9e-133 478.0 332 76.2
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 7.7e-133 477.6 329 76.0
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 1.3e-132 476.9 334 76.0
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 6.5e-132 474.6 334 76.0
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 1.1e-131 473.8 334 74.0
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 5.5e-131 471.5 331 74.0
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 2.1e-130 469.5 333 74.8
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 2.1e-130 469.5 336 73.2
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 3.6e-130 468.8 328 74.7
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 6.1e-130 468.0 333 74.2
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 3.9e-129 465.3 328 74.1
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 2.6e-128 462.6 327 73.4
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 3.3e-128 462.2 335 73.4
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 4.4e-128 461.8 332 74.7
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 4.4e-128 461.8 327 74.6
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 4.4e-128 461.8 330 73.9
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 9.7e-128 460.7 330 74.2
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.3e-127 460.3 328 73.8
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 1.3e-127 460.3 327 74.3
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 1.3e-127 460.3 334 74.0
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.7e-127 459.9 328 73.5
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 1.7e-127 459.9 339 72.3
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 3.7e-127 458.8 329 72.3
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 4.8e-127 458.4 331 72.8
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 6.3e-127 458.0 330 70.9
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 6.3e-127 458.0 330 73.3
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 1.8e-126 456.4 331 73.4
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 6.9e-126 454.5 336 72.6
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 1.2e-125 453.8 334 72.5
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 2.0e-125 453.0 330 71.2
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.0e-125 453.0 323 74.3
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 7.7e-125 451.1 328 72.3
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 1.3e-124 450.3 330 72.7
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 6.5e-124 448.0 339 70.5
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 2.5e-123 446.0 329 71.7
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 2.1e-122 443.0 340 71.2
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 1.4e-121 440.3 311 74.0
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 1.4e-121 440.3 300 75.3
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 1.1e-120 437.2 330 70.0
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 1.1e-120 437.2 333 67.9
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 1.1e-120 437.2 331 69.5
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.5e-120 436.8 297 76.8
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 2.0e-120 436.4 327 71.3
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 3.3e-120 435.6 332 69.3
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 9.7e-120 434.1 300 74.7
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 1.3e-119 433.7 300 74.7
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.7e-119 433.3 345 68.1
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 2.8e-119 432.6 335 69.6
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 3.1e-118 429.1 341 68.0
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 3.1e-118 429.1 366 64.8
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 7.7e-117 424.5 328 69.2
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.3e-116 423.7 328 69.2
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 2.2e-116 422.9 332 66.0
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 2.9e-116 422.5 272 79.4
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 3.8e-116 422.2 336 67.9
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 4.2e-115 418.7 362 64.1
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.6e-114 416.8 323 70.0
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.7e-114 416.0 330 68.2
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 2.3e-113 412.9 352 66.8
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 5.2e-113 411.8 370 63.5
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 6.7e-113 411.4 336 66.1
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 2.0e-112 409.8 342 67.0
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 2.6e-112 409.5 316 70.9
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 1.3e-111 407.1 326 68.4
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 3.7e-111 405.6 326 68.1
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 3.7e-111 405.6 360 65.6
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 6.3e-111 404.8 310 67.4
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.8e-110 403.3 272 76.1
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 5.3e-110 401.7 340 64.1
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 2.7e-109 399.4 402 58.7
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 5.9e-109 398.3 329 64.7
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.0e-108 397.5 324 66.7
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 4.0e-105 385.6 300 70.3
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 5.2e-105 385.2 281 71.5
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 5.7e-104 381.7 265 75.1
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 2.7e-101 372.9 300 65.0
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 1.0e-100 370.9 337 60.5
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 1.6e-98 363.6 314 62.7
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 4.4e-96 355.5 241 77.6
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 1.3e-95 354.0 305 64.3
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.4e-94 350.5 323 61.9
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 2.4e-94 349.7 196 94.4
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 2.9e-92 342.8 274 67.5
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 4.3e-91 339.0 250 69.6
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 9.5e-91 337.8 214 81.3
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 2.8e-90 336.3 300 57.7
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 4.4e-88 328.9 296 57.1
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 4.9e-87 325.5 200 89.0
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 9.2e-86 321.2 234 75.2
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 3.9e-84 315.8 208 78.8
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 1.6e-82 310.5 206 78.2
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 2.0e-80 303.5 232 72.4
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 4.4e-80 302.4 271 58.7
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 5.4e-70 268.9 207 67.6
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 2.6e-64 250.0 167 77.8
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 8.1e-58 228.4 306 41.8
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 6.4e-47 192.2 149 71.8
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 6.4e-47 192.2 143 74.1
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 6.7e-44 182.2 298 40.9
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 9.3e-30 135.2 103 66.0
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.3e-26 124.8 89 71.9
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.5e-24 117.9 247 37.7
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 2.6e-24 117.1 119 53.8
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 1.3e-23 114.8 99 61.6
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 6.5e-23 112.5 79 69.6
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.9e-22 110.9 95 64.2
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.3e-20 104.0 118 54.2
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 3.9e-20 103.2 91 63.7
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.4e-16 90.1 62 79.0
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.8e-15 86.7 61 72.1
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.8e-15 86.7 62 72.6
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.5e-15 85.9 62 74.2
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 5.5e-14 82.8 106 46.2
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.9e-12 76.6 58 72.4
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.7e-12 75.9 55 74.5
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 5.7e-11 72.8 73 49.3
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 7.4e-11 72.4 68 51.5
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.3e-10 71.6 53 62.3
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 3.4e-08 63.5 45 64.4
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 5.9e-08 62.8 42 69.0
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.7e-07 61.2 37 81.1
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 5.0e-07 59.7 35 77.1
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 5.0e-07 59.7 35 77.1
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 5.0e-07 59.7 124 36.3


User provided reference genes

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