Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 1.7e-171 605.9 305 100.0
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 1.7e-171 605.9 305 100.0
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 5.7e-159 564.3 323 90.4
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 2.6e-151 538.9 326 85.0
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 3.2e-146 521.9 323 85.8
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 3.6e-145 518.5 323 85.4
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 2.7e-137 492.3 325 80.6
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 2.6e-127 459.1 335 73.4
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 7.5e-127 457.6 317 76.7
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.5e-119 433.3 316 73.1
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 2.7e-116 422.5 317 72.6
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 2.3e-115 419.5 305 73.1
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 6.6e-115 417.9 317 71.0
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 5.9e-108 394.8 316 70.3
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 1.4e-80 303.9 306 57.5
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 4.6e-68 262.3 281 57.7
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 5.1e-67 258.8 283 57.6
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.5e-63 247.3 298 47.3
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 8.7e-59 231.5 305 46.2
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 6.5e-54 215.3 183 60.1
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 6.5e-54 215.3 175 60.6
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 1.4e-53 214.2 183 60.1
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 6.0e-52 208.8 166 63.3
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 2.3e-51 206.8 216 53.2
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 6.7e-51 205.3 166 58.4
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 2.5e-50 203.4 154 66.2
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.5e-50 203.4 177 61.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.5e-50 203.4 177 61.0
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 3.3e-50 203.0 144 66.7
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 7.4e-50 201.8 205 54.1
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 9.7e-50 201.4 161 61.5
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-49 201.1 197 56.3
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-49 201.1 197 56.3
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 1.3e-49 201.1 166 57.2
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 2.1e-49 200.3 157 63.7
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 4.8e-49 199.1 179 59.8
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 6.3e-49 198.7 167 58.1
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 8.2e-49 198.4 176 59.7
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.1e-48 198.0 167 57.5
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 2.4e-48 196.8 162 58.6
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.4e-48 196.8 221 47.5
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 4.1e-48 196.1 174 56.9
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 5.3e-48 195.7 164 58.5
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 6.9e-48 195.3 228 46.1
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 9.0e-48 194.9 156 59.0
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 2.6e-47 193.4 168 55.4
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 4.5e-47 192.6 179 58.7
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 4.5e-47 192.6 167 59.3
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 5.9e-47 192.2 154 62.3
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 5.9e-47 192.2 151 64.9
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.3e-46 191.0 156 58.3
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 2.2e-46 190.3 162 58.6
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 2.2e-46 190.3 160 57.5
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 2.9e-46 189.9 205 51.7
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 5.0e-46 189.1 157 60.5
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 6.5e-46 188.7 179 54.7
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.1e-45 188.0 159 56.0
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 1.4e-45 187.6 157 58.6
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 4.2e-45 186.0 159 55.3
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 7.2e-45 185.3 268 44.4
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.2e-44 184.5 167 56.9
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.2e-44 184.5 170 57.1
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 1.6e-44 184.1 253 46.6
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 6.1e-44 182.2 157 54.1
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.0e-43 181.4 190 49.5
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.0e-43 181.4 190 49.5
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 1.3e-43 181.0 299 40.8
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 2.3e-43 180.3 126 69.8
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 3.0e-43 179.9 159 56.0
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 3.0e-43 179.9 126 69.8
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 6.7e-43 178.7 159 55.3
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 6.7e-43 178.7 181 54.1
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 1.1e-42 177.9 159 55.3
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 1.1e-42 177.9 163 57.1
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.5e-42 177.6 159 54.1
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 1.9e-42 177.2 132 65.2
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.3e-42 176.4 157 53.5
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 5.7e-42 175.6 158 60.1
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 7.4e-42 175.3 161 55.9
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 9.7e-42 174.9 160 56.9
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 9.7e-42 174.9 193 50.3
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.3e-41 174.5 158 56.3
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 1.7e-41 174.1 166 54.2
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.7e-41 174.1 161 55.3
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 1.7e-41 174.1 193 50.3
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 2.2e-41 173.7 167 52.7
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 3.7e-41 172.9 160 55.0
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 8.2e-41 171.8 121 66.1
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.4e-40 171.0 164 52.4
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.4e-40 171.0 161 54.7
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 2.6e-39 166.8 179 55.3
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 5.9e-39 165.6 127 64.6
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 7.7e-39 165.2 163 52.8
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 1.0e-38 164.9 153 54.9
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.7e-38 164.1 132 61.4
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 3.8e-38 162.9 163 52.1
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.4e-37 161.0 164 51.2
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 1.9e-37 160.6 183 48.1
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 7.2e-37 158.7 80 97.5
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 2.1e-36 157.1 153 49.7
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 2.3e-35 153.7 167 52.7
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 2.0e-34 150.6 139 56.1
BolSC83t61262H Brassica oleracea HOM05D006505 ORTHO05D008086 3.1e-32 143.3 226 46.5
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 5.9e-31 139.0 139 52.5
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.0e-30 138.3 181 42.0
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.0e-30 138.3 181 42.0
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 1.7e-30 137.5 138 52.9
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 5.5e-29 132.5 137 48.2
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 2.1e-28 130.6 110 62.7
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 3.6e-28 129.8 93 63.4
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 3.0e-27 126.7 121 51.2
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 6.7e-27 125.6 208 38.5
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 2.2e-22 110.5 93 58.1
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 3.0e-19 100.1 90 51.1
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 4.0e-19 99.8 119 45.4
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.2e-18 98.2 95 50.5
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 4.1e-16 89.7 46 93.5
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 5.3e-16 89.4 169 36.7
BraA05t21433Z Brassica rapa HOM05D006505 ORTHO05D008086 9.1e-16 88.6 209 34.9
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 6.5e-14 82.4 106 38.7
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 3.2e-13 80.1 85 50.6
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 2.7e-12 77.0 134 35.1
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 2.3e-11 73.9 69 53.6
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 2.2e-09 67.4 93 45.2
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 4.1e-08 63.2 104 41.3
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 7.0e-08 62.4 74 44.6
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 9.1e-08 62.0 74 43.2
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.6e-07 61.2 121 34.7
Medtr3g108030 Medicago truncatula HOM05D000964 ORTHO05D003870 3.5e-07 60.1 121 36.4
Psat5g206520 Pisum sativum HOM05D000964 ORTHO05D003870 4.5e-07 59.7 142 33.1
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 7.7e-07 58.9 121 34.7
Nitab4.5_0020737g0010 Nicotiana tabacum HOM05D000964 ORTHO05D003870 1.0e-06 58.5 121 34.7
HanXRQChr06g0180681 Helianthus annuus HOM05D000964 ORTHO05D003870 1.3e-06 58.2 121 33.9
CAN.G1595.3 Capsicum annuum HOM05D000964 ORTHO05D003870 1.7e-06 57.8 121 33.9
DCAR_032518 Daucus carota HOM05D000964 ORTHO05D003870 1.7e-06 57.8 121 33.9
Gohir.A05G326932 Gossypium hirsutum HOM05D000964 ORTHO05D003870 1.7e-06 57.8 121 34.7
Solyc00g500030.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 1.7e-06 57.8 121 33.9
Solyc00g500075.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 1.7e-06 57.8 121 33.9
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 2.3e-06 57.4 74 41.9
VMungo0783G0001 Vigna mungo HOM05D000964 ORTHO05D003870 2.3e-06 57.4 121 33.9
ATR0306G003 Amborella trichopoda HOM05D000964 ORTHO05D003870 2.9e-06 57.0 121 35.5
HanXRQChr00c0557g0575741 Helianthus annuus HOM05D000964 ORTHO05D003870 2.9e-06 57.0 121 33.9
HanXRQChr01g0020231 Helianthus annuus HOM05D000964 ORTHO05D003870 2.9e-06 57.0 121 33.9
HanXRQChr04g0127501 Helianthus annuus HOM05D000964 ORTHO05D003870 2.9e-06 57.0 121 33.9
HanXRQChr10g0284371 Helianthus annuus HOM05D000964 ORTHO05D003870 2.9e-06 57.0 121 33.9
HanXRQChr10g0318071 Helianthus annuus HOM05D000964 ORTHO05D003870 2.9e-06 57.0 121 33.9
HanXRQChr11g0326951 Helianthus annuus HOM05D000964 ORTHO05D003870 2.9e-06 57.0 121 33.9
HanXRQCPg0580171 Helianthus annuus HOM05D000964 ORTHO05D003870 2.9e-06 57.0 121 33.9
EL10Ac4g07916 Beta vulgaris HOM05D000964 ORTHO05D003870 3.8e-06 56.6 121 35.5
MELO3C001187.2 Cucumis melo HOM05D000964 ORTHO05D003870 3.8e-06 56.6 121 35.5
HanXRQChr10g0303901 Helianthus annuus HOM05D000964 ORTHO05D003870 3.8e-06 56.6 120 33.3
AL2G20570 Arabidopsis lyrata HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 33.9
ATCG00750 Arabidopsis thaliana HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 33.9
BcaNung05008 Brassica carinata HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 33.9
BNapus_Darmor_BZH_scaffold_253p00340 Brassica napus HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 33.9
BolSC29t60527H Brassica oleracea HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 33.9
BolSC29t60608H Brassica oleracea HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 33.9
BolSC35t60668H Brassica oleracea HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 33.9
BolSC35t60731H Brassica oleracea HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 33.9
BraSC138t45555Z Brassica rapa HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 33.9
BraSC59t46572Z Brassica rapa HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 33.9
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 33.9
FvH4_c3g00200 Fragaria vesca HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 34.7
Gohir.1Z050234 Gossypium hirsutum HOM05D000964 ORTHO05D003870 5.0e-06 56.2 121 34.7
QL93p1043_0021 Quercus lobata HOM05D000964 ORTHO05D003870 5.0e-06 56.2 120 35.0
Gohir.A12G025000 Gossypium hirsutum HOM05D000964 ORTHO05D003870 8.6e-06 55.5 121 34.7
PSO548G0016 Papaver somniferum HOM05D000964 ORTHO05D003870 8.6e-06 55.5 121 33.9


User provided reference genes

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