Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 3.7e-82 308.1 155 100.0
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 6.4e-66 254.2 123 100.0
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 9.9e-59 230.3 178 74.2
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 3.1e-52 208.8 130 81.5
C06p35280 Brassica napus HOM05D003893 ORTHO05D021800 6.8e-52 207.6 139 77.7
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 8.7e-47 190.7 132 76.5
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 2.5e-46 189.1 214 55.1
BolC6t38634H Brassica oleracea HOM05D003893 ORTHO05D021800 1.3e-45 186.8 141 72.3
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 3.9e-39 165.2 213 50.2
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 6.6e-39 164.5 213 50.2
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 1.5e-38 163.3 214 49.5
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 1.9e-38 162.9 214 50.0
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 2.1e-37 159.5 211 50.7
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 2.1e-37 159.5 216 50.0
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 2.1e-37 159.5 216 50.0
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 6.2e-37 157.9 214 49.1
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 8.1e-37 157.5 214 49.5
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 1.4e-36 156.8 214 49.5
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 1.4e-36 156.8 216 48.1
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 2.0e-35 152.9 214 47.7
BcaC02g11244 Brassica carinata HOM05D003893 ORTHO05D094965 3.7e-29 132.1 83 86.7
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 3.8e-18 95.5 210 34.3
A09p23880 Brassica napus HOM05D003893 ORTHO05D005167 1.6e-16 90.1 50 78.0
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 4.6e-16 88.6 188 34.6
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 3.0e-15 85.9 222 32.0
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 3.0e-15 85.9 221 30.8
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.7e-13 79.0 147 36.1
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.8e-12 76.6 221 30.3
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 6.9e-12 74.7 221 31.2
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 6.9e-12 74.7 146 33.6
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 1.5e-11 73.6 163 32.5
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 2.0e-11 73.2 152 33.6
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 4.5e-11 72.0 164 31.7
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 5.9e-11 71.6 144 33.3
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 1.7e-10 70.1 143 32.2
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 1.7e-10 70.1 165 28.5
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 2.2e-10 69.7 144 32.6
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 2.9e-10 69.3 136 29.4
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 8.5e-10 67.8 60 55.0
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 1.1e-09 67.4 115 36.5
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.1e-09 67.4 167 28.1
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 1.9e-09 66.6 115 35.7
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 1.9e-09 66.6 115 35.7
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 2.5e-09 66.2 107 38.3
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 2.5e-09 66.2 147 30.6
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 4.2e-09 65.5 64 45.3
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 5.5e-09 65.1 214 28.5
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 7.2e-09 64.7 115 36.5
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 9.4e-09 64.3 54 51.9
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 9.4e-09 64.3 105 36.2
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 1.2e-08 63.9 63 49.2
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 1.6e-08 63.5 137 33.6
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 1.6e-08 63.5 148 27.7
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 1.6e-08 63.5 64 46.9
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 2.7e-08 62.8 52 55.8
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 3.6e-08 62.4 183 28.4
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 4.6e-08 62.0 155 27.1
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 4.6e-08 62.0 64 45.3
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 6.1e-08 61.6 55 52.7
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 1.0e-07 60.8 64 43.8
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 1.4e-07 60.5 86 36.0
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 1.4e-07 60.5 86 36.0
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 2.3e-07 59.7 58 43.1
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 3.0e-07 59.3 215 27.9
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 3.9e-07 58.9 52 51.9
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 3.9e-07 58.9 77 42.9
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 5.1e-07 58.5 63 42.9
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 6.7e-07 58.2 77 40.3
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 2.5e-06 56.2 49 49.0
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 3.3e-06 55.8 185 29.2
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 3.3e-06 55.8 52 50.0
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 9.7e-06 54.3 54 46.3


User provided reference genes

Program Settings