Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 0.0e+00 1789.6 967 100.0
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 0.0e+00 1538.9 1056 79.9
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 0.0e+00 1491.9 1056 78.2
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 0.0e+00 1473.8 1056 77.7
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 0.0e+00 1464.1 1062 76.9
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 0.0e+00 1415.6 1069 73.2
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 0.0e+00 1399.4 1066 74.6
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 0.0e+00 1355.9 1079 72.8
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 0.0e+00 1349.0 1079 71.6
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 0.0e+00 1236.9 1073 66.0
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 0.0e+00 1080.5 1023 62.7
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 1.9e-253 879.8 758 69.7
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 6.3e-196 688.7 1127 41.5
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 1.7e-193 680.6 1180 41.4
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 4.2e-184 649.4 1215 38.3
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 3.6e-183 646.4 1186 40.3
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 3.2e-179 633.3 1167 38.9
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 5.4e-179 632.5 1177 39.9
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 3.5e-178 629.8 1119 40.6
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 3.5e-178 629.8 1094 38.8
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.7e-177 627.5 1123 40.2
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 8.6e-177 625.2 1277 36.3
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 6.1e-175 619.0 1204 36.8
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.6e-173 613.6 1240 36.4
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 7.5e-173 612.1 1277 35.9
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 7.0e-171 605.5 1297 36.5
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 6.0e-170 602.4 1253 35.3
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 1.3e-169 601.3 1228 37.0
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 2.5e-168 597.0 1347 35.6
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 1.5e-165 587.8 1309 35.4
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 2.6e-165 587.0 1308 35.5
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 7.8e-162 575.5 1272 35.5
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 1.9e-160 570.9 1286 34.9
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 4.4e-157 559.7 1196 35.9
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 6.4e-156 555.8 1217 36.0
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.5e-152 544.7 1134 38.4
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.9e-152 544.3 1321 34.4
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 2.1e-151 540.8 1206 35.7
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 1.1e-150 538.5 1186 35.9
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.9e-148 529.6 1132 36.0
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.4e-147 528.1 1045 37.5
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 6.0e-146 522.7 1259 34.9
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 1.0e-145 521.9 1387 32.2
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.7e-145 521.2 1289 34.1
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.9e-144 517.7 1363 31.7
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 1.9e-144 517.7 1375 31.6
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 2.5e-144 517.3 1292 33.7
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 4.3e-144 516.5 1323 33.3
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 5.3e-142 509.6 1365 32.7
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 2.6e-141 507.3 1314 33.2
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 3.8e-140 503.4 1169 34.6
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 4.9e-140 503.1 1306 33.2
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.9e-139 501.1 1356 32.4
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 9.3e-139 498.8 1335 32.6
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 1.2e-138 498.4 1259 34.0
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 3.5e-138 496.9 1335 32.4
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 1.0e-137 495.4 1051 37.9
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 1.0e-137 495.4 1279 32.8
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 2.3e-137 494.2 1287 33.9
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 3.3e-136 490.3 1319 32.8
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 7.3e-136 489.2 736 42.1
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 2.8e-135 487.3 1285 32.0
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 6.2e-135 486.1 1303 32.1
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.5e-133 481.5 1060 34.4
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 2.2e-132 477.6 1299 33.2
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 1.4e-131 474.9 773 39.3
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 2.4e-131 474.2 1295 33.2
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 4.2e-131 473.4 1108 34.7
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 5.4e-131 473.0 1295 31.7
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.1e-127 461.1 1075 34.2
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 4.8e-127 459.9 1241 32.7
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.2e-125 455.3 1346 31.6
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 2.6e-125 454.1 736 38.7
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 5.8e-125 453.0 689 40.1
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 6.5e-124 449.5 1224 32.2
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 1.8e-121 441.4 1204 32.2
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 4.5e-117 426.8 1200 32.2
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 6.1e-114 416.4 1179 30.9
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 3.3e-112 410.6 800 36.1
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 8.2e-111 406.0 798 36.0
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 5.3e-110 403.3 1219 31.3
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 1.2e-109 402.1 1166 33.2
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 3.2e-107 394.0 747 35.6
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 3.9e-105 387.1 1001 30.1
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.1e-102 379.0 1344 27.7
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 5.5e-99 366.7 1253 30.0
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 2.1e-98 364.8 1014 29.7
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 1.0e-92 345.9 1208 28.0
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 5.2e-73 280.4 530 36.4
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 2.3e-65 255.0 786 27.9
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 1.6e-61 242.3 291 47.1
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 3.6e-58 231.1 416 41.1
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 5.4e-54 217.2 344 39.5
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 2.0e-53 215.3 1070 24.6
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 3.5e-53 214.5 723 31.3
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 1.3e-52 212.6 621 30.0
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 3.9e-52 211.1 220 57.3
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.5e-48 199.1 590 31.2
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 2.2e-47 195.3 262 50.0
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 4.9e-47 194.1 360 34.4
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 4.1e-46 191.0 153 57.5
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 7.3e-43 180.3 165 63.6
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 1.1e-35 156.4 102 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.8e-33 149.1 143 46.2
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 3.1e-33 148.3 145 49.0
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.8e-31 141.4 229 38.0
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.1e-30 139.8 268 46.6
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 5.4e-30 137.5 145 46.9
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 9.3e-30 136.7 96 71.9
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 2.1e-26 125.6 145 44.8
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 2.4e-25 122.1 130 54.6
BcaB03g13969 Brassica carinata HOM05D001879 ORTHO05D007648 5.3e-25 120.9 183 48.1
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 7.6e-24 117.1 92 71.7
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 7.6e-24 117.1 242 36.4
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 7.4e-19 100.5 692 23.3
AL4G14240 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 2.1e-18 99.0 81 69.1
AL5G19250 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 6.2e-18 97.4 81 69.1
AL2G19550 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 9.0e-17 93.6 81 67.9
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.4e-16 91.7 191 35.6
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 7.1e-14 84.0 129 38.8
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 2.5e-11 75.5 193 32.6
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 2.1e-10 72.4 203 30.0
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 3.7e-10 71.6 126 32.5
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 9.0e-09 67.0 146 30.8
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.0e-08 65.9 54 51.9
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 8.4e-07 60.5 77 42.9
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 1.4e-06 59.7 112 37.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.4e-06 59.7 47 55.3
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.5e-06 58.9 77 41.6


User provided reference genes

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