Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1602.0 849 100.0
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1131.7 1062 63.1
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1114.8 1062 62.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 1088.2 1067 60.8
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 1086.2 1071 60.7
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1078.9 1071 60.5
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 1.3e-309 1066.2 1068 59.3
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 8.0e-304 1047.0 1065 59.0
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 1.2e-302 1043.1 1038 59.3
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 5.8e-302 1040.8 1069 58.6
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 9.8e-302 1040.0 990 62.7
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 1.7e-293 1012.7 1031 59.2
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 6.2e-272 941.0 1086 54.2
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 1.1e-244 850.5 1082 49.5
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 7.2e-236 821.2 1028 49.2
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 8.8e-234 814.3 1074 47.9
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 2.2e-229 799.7 1111 46.4
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 5.0e-229 798.5 1102 46.7
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 1.8e-226 790.0 1138 45.6
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 3.9e-226 788.9 1141 45.5
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 9.7e-225 784.3 1130 45.8
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 6.3e-224 781.6 1126 45.8
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 1.1e-223 780.8 1107 46.0
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 3.1e-223 779.2 1133 44.7
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 1.2e-222 777.3 1126 45.5
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 1.2e-222 777.3 1121 45.1
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 1.2e-222 777.3 1138 45.0
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 1.5e-222 776.9 1156 44.9
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 2.0e-222 776.5 1070 46.5
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 2.0e-222 776.5 1114 46.1
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 5.9e-222 775.0 1145 44.9
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 3.8e-221 772.3 1120 45.2
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 3.8e-221 772.3 1120 45.2
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 3.8e-221 772.3 1123 45.2
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 6.5e-221 771.5 1142 45.4
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 6.5e-221 771.5 1181 43.9
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 3.2e-220 769.2 1141 43.8
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 3.2e-220 769.2 1112 45.5
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 3.2e-220 769.2 949 48.8
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 7.2e-220 768.1 1073 46.1
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 9.4e-220 767.7 1108 45.3
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.1e-219 766.5 1122 45.0
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 1.0e-218 764.2 1143 44.4
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 1.0e-218 764.2 1130 44.9
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 1.4e-218 763.8 1139 44.7
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 1.1e-217 760.8 1121 44.8
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.0e-217 760.0 1124 44.7
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 9.7e-217 757.7 1117 44.8
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 9.7e-217 757.7 1129 44.0
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 1.3e-216 757.3 1141 44.3
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 2.2e-216 756.5 1117 44.9
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.8e-216 756.1 1083 44.9
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 6.3e-216 755.0 1057 46.2
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 6.3e-216 755.0 1130 44.6
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 8.2e-216 754.6 1144 44.1
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 3.1e-215 752.7 1116 43.8
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 3.1e-215 752.7 1065 46.2
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 1.6e-214 750.4 1114 44.6
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 8.5e-213 744.6 1132 43.7
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 5.5e-212 741.9 1106 44.5
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 5.5e-212 741.9 1122 43.7
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 7.2e-212 741.5 1135 44.0
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 1.6e-211 740.3 906 49.4
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 1.6e-211 740.3 1133 43.5
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 1.0e-210 737.6 1130 43.5
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 1.4e-210 737.3 1032 46.9
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 1.4e-210 737.3 1110 43.8
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 1.8e-210 736.9 1143 43.8
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 1.8e-210 736.9 1150 43.7
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 1.8e-210 736.9 1057 46.2
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 6.7e-210 734.9 1080 45.0
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 2.0e-209 733.4 487 73.9
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 2.6e-209 733.0 1062 45.6
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 7.0e-207 724.9 1122 44.1
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 7.0e-207 724.9 1095 44.7
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 1.2e-206 724.2 1167 42.6
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 3.5e-206 722.6 1075 44.4
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 3.5e-206 722.6 1049 45.1
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 1.2e-203 714.1 1069 43.7
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 2.1e-203 713.4 943 47.2
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 8.0e-203 711.4 1122 42.7
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 1.0e-202 711.1 1106 42.9
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 2.3e-202 709.9 487 71.5
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 2.0e-201 706.8 960 46.5
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 6.3e-200 701.8 936 47.0
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 2.0e-198 696.8 891 47.9
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.3e-197 693.3 1095 42.7
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 4.7e-195 685.6 1116 42.6
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.4e-193 679.5 954 45.5
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 6.6e-189 665.2 1103 41.8
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 3.3e-188 662.9 1118 42.2
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 2.8e-187 659.8 1117 41.3
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 4.0e-186 656.0 1087 42.0
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 7.0e-183 645.2 1120 40.9
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 7.8e-182 641.7 1117 40.7
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 1.1e-180 637.9 1118 40.5
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 3.7e-176 622.9 1117 40.3
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 3.7e-176 622.9 1020 40.7
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 1.2e-174 617.8 504 61.7
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.3e-173 614.4 486 61.7
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 1.3e-173 614.4 501 64.7
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 2.1e-166 590.5 539 57.1
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 3.6e-163 579.7 1089 39.1
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 4.2e-159 566.2 1033 38.6
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.1e-147 527.3 894 42.2
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 9.0e-146 521.9 497 52.9
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 1.4e-135 488.0 480 55.4
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 8.2e-131 472.2 845 39.4
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 3.2e-111 407.1 824 38.2
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.5e-87 327.8 278 62.6
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 2.2e-83 314.7 480 38.8
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 5.4e-66 256.9 188 67.0
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 1.3e-56 225.7 479 33.0
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.8e-36 157.1 101 75.2
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 2.2e-35 155.2 93 79.6
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 6.0e-33 147.1 97 72.2
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.9e-31 142.1 557 26.9
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 8.4e-27 126.7 441 33.3
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.4e-26 125.9 79 79.7
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.6e-25 122.5 362 30.7
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 1.3e-24 119.4 61 90.2
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 1.1e-21 109.8 89 64.0
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 1.1e-15 89.7 60 68.3
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 1.5e-15 89.4 283 26.5
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 2.1e-14 85.5 102 46.1
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 1.4e-13 82.8 60 68.3
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 3.1e-13 81.6 60 60.0
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.6e-12 78.6 388 32.2
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 4.5e-12 77.8 63 54.0
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 1.0e-11 76.6 73 54.8
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 1.7e-11 75.9 69 63.8
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.9e-11 75.1 62 56.5
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 1.1e-10 73.2 53 75.5
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 7.2e-10 70.5 60 56.7
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.2e-09 69.7 60 56.7
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.6e-09 69.3 189 33.9
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 2.7e-09 68.6 36 77.8
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 1.9e-07 62.4 58 56.9
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 2.5e-07 62.0 84 40.5
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 4.3e-07 61.2 28 100.0
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 9.7e-07 60.1 69 42.0
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.6e-06 59.3 71 46.5
Sabra12G0046600 Salix brachista HOM05D003369 ORTHO05D004089 4.8e-06 57.8 33 78.8


User provided reference genes

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