Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 8.1e-52 206.8 107 100.0
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 3.0e-38 161.8 83 100.0
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 4.9e-33 144.4 84 90.5
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 7.3e-29 130.6 93 78.5
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 9.6e-29 130.2 93 78.5
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 2.1e-28 129.0 75 90.7
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 2.1e-28 129.0 93 77.4
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 2.1e-28 129.0 93 77.4
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 3.6e-28 128.3 93 77.4
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 3.6e-28 128.3 93 77.4
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 3.6e-28 128.3 93 77.4
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 3.6e-28 128.3 93 77.4
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 3.6e-28 128.3 93 77.4
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 3.6e-28 128.3 93 76.3
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 6.2e-28 127.5 93 76.3
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 8.1e-28 127.1 93 76.3
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 3.1e-27 125.2 75 86.7
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 9.0e-27 123.6 75 84.0
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 1.2e-26 123.2 78 79.5
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 4.5e-26 121.3 75 81.3
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 7.6e-26 120.6 75 81.3
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 8.4e-25 117.1 75 78.7
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 8.4e-25 117.1 75 78.7
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 1.1e-24 116.7 75 80.0
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 1.4e-24 116.3 75 78.7
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 1.9e-24 115.9 75 80.0
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 2.4e-24 115.5 75 78.7
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 2.4e-24 115.5 75 78.7
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 9.3e-24 113.6 75 80.0
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 9.3e-24 113.6 75 77.3
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 1.2e-23 113.2 75 78.7
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 2.1e-23 112.5 75 76.0
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 2.1e-23 112.5 75 76.0
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 2.1e-23 112.5 75 76.0
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 2.7e-23 112.1 75 77.3
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 2.7e-23 112.1 75 76.0
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 2.7e-23 112.1 76 77.6
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 2.7e-23 112.1 100 63.0
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 3.5e-23 111.7 75 78.7
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 3.5e-23 111.7 75 78.7
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 3.5e-23 111.7 76 77.6
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 4.6e-23 111.3 75 78.7
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 4.6e-23 111.3 75 78.7
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 4.6e-23 111.3 75 77.3
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 6.0e-23 110.9 75 77.3
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 6.0e-23 110.9 100 63.0
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 6.0e-23 110.9 75 78.7
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 6.0e-23 110.9 75 78.7
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 6.0e-23 110.9 75 78.7
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 6.0e-23 110.9 75 78.7
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 6.0e-23 110.9 75 78.7
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.0e-22 110.2 75 76.0
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 1.0e-22 110.2 75 76.0
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 1.3e-22 109.8 75 77.3
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 2.3e-22 109.0 75 74.7
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 2.3e-22 109.0 75 76.0
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 3.0e-22 108.6 75 74.7
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 3.0e-22 108.6 75 77.3
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 3.0e-22 108.6 75 77.3
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 3.0e-22 108.6 75 77.3
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 3.0e-22 108.6 75 76.0
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 3.0e-22 108.6 75 76.0
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 5.1e-22 107.8 75 74.7
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 5.1e-22 107.8 75 77.3
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 5.1e-22 107.8 75 74.7
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 6.7e-22 107.5 76 75.0
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 6.7e-22 107.5 75 74.7
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 6.7e-22 107.5 76 75.0
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 6.7e-22 107.5 75 72.0
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 8.7e-22 107.1 75 73.3
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 8.7e-22 107.1 81 72.8
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 1.1e-21 106.7 75 73.3
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 1.1e-21 106.7 75 74.7
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 1.5e-21 106.3 75 73.3
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 1.9e-21 105.9 75 74.7
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 1.9e-21 105.9 75 73.3
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.9e-21 105.9 75 74.7
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.5e-21 105.5 95 63.2
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 2.5e-21 105.5 75 73.3
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 2.5e-21 105.5 75 73.3
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 5.6e-21 104.4 75 74.7
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 9.6e-21 103.6 75 73.3
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.3e-20 103.2 94 62.8
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 1.3e-20 103.2 75 73.3
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 1.3e-20 103.2 75 73.3
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 1.6e-20 102.8 75 72.0
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 2.1e-20 102.4 76 71.1
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 2.8e-20 102.1 75 73.3
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 2.8e-20 102.1 76 73.7
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 8.1e-20 100.5 76 69.7
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 1.8e-19 99.4 93 60.2
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 9.0e-19 97.1 75 69.3
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 9.0e-19 97.1 75 70.7
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 1.2e-18 96.7 94 58.5
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 2.6e-18 95.5 74 68.9
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 3.4e-18 95.1 116 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.7e-17 92.8 75 66.7
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.7e-17 92.8 48 93.8
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 1.4e-16 89.7 51 84.3
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 2.4e-16 89.0 48 89.6
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.4e-16 89.0 88 59.1
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 4.2e-16 88.2 51 84.3
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 6.0e-15 84.3 48 87.5
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 7.9e-15 84.0 48 85.4
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.3e-12 76.6 55 76.4
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 2.2e-09 65.9 107 42.1
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 2.7e-07 58.9 74 48.6
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 1.3e-06 56.6 51 62.7


User provided reference genes

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