Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 5.0e-235 817.4 411 100.0
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 9.4e-234 813.1 411 98.5
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 2.6e-231 805.1 411 97.6
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 4.3e-210 734.6 386 94.3
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 4.3e-210 734.6 386 94.3
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 5.8e-191 671.0 388 86.9
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 9.9e-175 617.1 388 79.4
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 8.4e-166 587.4 391 76.0
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 7.6e-159 564.3 390 73.3
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 2.3e-155 552.7 377 73.7
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 2.3e-155 552.7 376 74.2
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 8.7e-155 550.8 373 75.3
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 5.9e-135 485.0 374 67.1
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 3.6e-116 422.5 377 58.4
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 3.3e-85 319.7 367 46.3
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 1.2e-84 317.8 367 46.3
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 2.0e-82 310.5 374 45.5
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 1.7e-81 307.4 368 46.5
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 8.4e-81 305.1 368 43.2
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 1.1e-80 304.7 373 45.8
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 1.4e-80 304.3 375 43.7
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 1.2e-79 301.2 363 43.5
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 1.6e-79 300.8 373 43.2
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 2.7e-79 300.1 365 45.5
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 4.6e-79 299.3 369 43.4
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 1.3e-78 297.7 363 46.3
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 8.6e-78 295.0 364 43.4
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 8.6e-78 295.0 366 45.4
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.1e-77 294.7 373 44.0
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.5e-77 294.3 372 41.9
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.5e-77 294.3 362 43.6
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 4.3e-77 292.7 362 43.9
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 5.6e-77 292.4 377 45.9
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 5.6e-77 292.4 360 44.4
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 5.6e-77 292.4 373 41.8
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 7.3e-77 292.0 375 43.2
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 9.6e-77 291.6 368 43.8
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.1e-76 290.4 372 42.7
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 4.7e-76 289.3 374 44.9
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 6.2e-76 288.9 367 43.9
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 8.1e-76 288.5 365 44.1
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.1e-75 288.1 362 42.8
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 1.4e-75 287.7 374 43.6
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 2.4e-75 287.0 364 42.9
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 3.1e-75 286.6 330 46.4
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.1e-75 286.6 383 42.8
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 3.1e-75 286.6 370 44.1
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 3.1e-75 286.6 362 42.0
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 8.9e-75 285.0 373 41.6
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 1.2e-74 284.6 387 42.6
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.2e-74 284.6 359 42.6
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 2.0e-74 283.9 360 45.3
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.6e-74 283.5 369 42.8
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.3e-73 281.2 368 41.0
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 2.2e-73 280.4 366 44.0
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 2.2e-73 280.4 362 43.4
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 2.2e-73 280.4 369 41.5
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 4.9e-73 279.3 363 43.3
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 8.4e-73 278.5 371 42.6
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 8.4e-73 278.5 362 43.1
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.1e-72 278.1 373 42.4
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 1.9e-72 277.3 372 41.7
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 4.2e-72 276.2 363 43.0
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 4.2e-72 276.2 370 41.9
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.4e-72 275.8 365 41.1
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 1.6e-71 274.2 374 41.4
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 1.6e-71 274.2 363 43.3
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 1.6e-71 274.2 383 40.5
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 4.6e-71 272.7 370 43.0
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 7.8e-71 271.9 362 43.1
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 2.3e-70 270.4 369 41.5
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.3e-68 264.6 372 40.6
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.6e-68 264.2 372 40.6
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 1.6e-68 264.2 358 41.9
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.8e-68 263.5 308 45.1
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 3.6e-68 263.1 372 40.9
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 8.1e-68 261.9 365 43.3
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.8e-67 260.8 365 40.3
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.8e-67 260.8 393 39.9
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 2.4e-67 260.4 396 39.4
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 5.3e-67 259.2 363 38.6
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 9.0e-67 258.5 376 40.7
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 9.0e-67 258.5 358 41.1
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 4.4e-66 256.1 365 39.5
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 7.6e-66 255.4 365 40.5
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 9.9e-66 255.0 368 41.0
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 1.7e-65 254.2 373 42.6
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 3.8e-65 253.1 377 40.8
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 8.4e-65 251.9 361 37.7
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 3.2e-64 250.0 367 40.9
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 4.2e-64 249.6 366 39.9
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 1.2e-63 248.1 368 37.8
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.2e-63 248.1 368 38.3
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 2.1e-63 247.3 371 40.4
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 3.5e-63 246.5 389 36.8
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 3.5e-63 246.5 389 36.8
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 4.6e-63 246.1 367 37.9
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 7.9e-63 245.4 364 41.8
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 1.7e-62 244.2 394 38.6
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 2.3e-62 243.8 358 38.3
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 3.0e-62 243.4 389 36.8
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 8.7e-62 241.9 366 39.9
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 2.5e-61 240.4 385 39.2
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 5.6e-61 239.2 364 36.5
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.6e-60 237.7 360 38.3
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.8e-59 234.2 358 39.7
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 4.0e-59 233.0 391 38.1
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 5.3e-59 232.6 364 36.3
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 2.9e-57 226.9 247 49.0
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 4.9e-57 226.1 363 35.8
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 2.4e-56 223.8 365 35.6
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 3.2e-56 223.4 332 37.3
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 4.2e-56 223.0 363 37.7
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 7.1e-56 222.2 371 35.0
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 1.6e-55 221.1 359 36.2
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 1.8e-54 217.6 365 35.9
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 3.0e-54 216.9 273 42.1
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 1.1e-53 214.9 265 43.8
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 7.4e-53 212.2 377 37.9
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 1.6e-52 211.1 357 38.9
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 2.8e-52 210.3 334 36.2
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.8e-52 209.5 214 50.0
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 1.1e-51 208.4 276 39.9
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.2e-50 204.9 263 38.4
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 7.6e-50 202.2 362 33.4
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 1.0e-49 201.8 363 35.5
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 6.0e-47 192.6 182 52.2
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 1.1e-45 188.3 290 39.7
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 2.4e-43 180.6 365 32.1
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 4.5e-42 176.4 182 49.5
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 1.7e-41 174.5 215 41.4
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 3.1e-35 153.7 229 36.2
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.2e-33 147.5 207 42.5
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.1e-27 128.6 390 29.5
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.0e-26 124.4 201 37.3
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 1.9e-24 117.9 333 27.9
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 1.9e-24 117.9 386 29.8
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 2.1e-23 114.4 384 26.3
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 2.7e-23 114.0 375 28.5
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 6.7e-22 109.4 370 27.6
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 6.7e-22 109.4 172 37.2
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.1e-21 108.6 380 27.6
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 9.7e-21 105.5 378 28.0
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 9.7e-21 105.5 227 32.6
Sopen06g034930 Solanum pennellii HOM05D007853 ORTHO05D009873 9.7e-21 105.5 371 26.4
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 1.3e-20 105.1 193 34.2
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 1.7e-20 104.8 372 28.0
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.7e-20 104.8 219 33.8
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 4.8e-20 103.2 372 27.4
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 4.8e-20 103.2 372 27.4
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 4.8e-20 103.2 357 26.3
Solyc06g083550.1 Solanum lycopersicum HOM05D007853 ORTHO05D009873 8.2e-20 102.4 371 26.1
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 3.1e-19 100.5 372 27.4
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 3.1e-19 100.5 372 27.4
Sp3g22500 Schrenkiella parvula HOM05D007853 ORTHO05D009873 4.1e-19 100.1 377 27.3
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 9.1e-19 99.0 380 27.6
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.6e-18 97.4 378 25.7
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 4.5e-18 96.7 381 27.8
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 2.9e-17 94.0 118 44.1
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 9.4e-16 89.0 379 25.3
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 1.2e-15 88.6 355 29.0
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.2e-15 88.6 377 25.5
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.2e-15 88.6 377 25.5
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 5.2e-14 83.2 262 29.8
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.5e-13 81.6 134 32.1
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 4.8e-12 76.6 83 44.6
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 3.8e-09 67.0 74 44.6
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 5.5e-08 63.2 84 40.5
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 2.7e-07 60.8 90 37.8


User provided reference genes

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