Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 9.1e-93 343.6 177 100.0
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 3.7e-86 321.6 185 91.9
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 7.2e-82 307.4 206 81.6
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 9.8e-79 297.0 185 87.0
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 7.8e-76 287.3 210 76.7
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 8.0e-73 277.3 239 68.2
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 8.0e-73 277.3 239 68.2
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 5.2e-72 274.6 239 68.2
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.7e-70 269.6 235 66.8
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 2.9e-70 268.9 235 66.8
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 2.3e-64 249.2 239 62.3
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 7.3e-58 227.6 235 57.9
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 4.7e-57 224.9 239 56.9
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 2.6e-55 219.2 239 54.4
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 4.1e-53 211.8 239 53.6
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 4.6e-52 208.4 239 52.7
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 2.4e-48 196.1 239 52.7
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 3.4e-39 165.6 232 47.4
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 2.2e-38 162.9 249 44.6
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.9e-34 149.8 124 60.5
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 5.6e-34 148.3 161 52.2
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 9.6e-34 147.5 124 59.7
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.3e-33 147.1 124 59.7
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 6.2e-33 144.8 159 50.9
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.1e-32 144.1 152 52.0
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 1.4e-32 143.7 126 57.9
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.8e-32 143.3 152 50.7
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 2.4e-32 142.9 124 57.3
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 3.1e-32 142.5 235 38.7
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.0e-32 142.1 123 61.0
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.2e-31 140.6 124 58.1
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.2e-31 140.6 153 50.3
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.5e-31 140.2 238 39.5
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 1.5e-31 140.2 232 39.7
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.5e-31 140.2 124 59.7
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 2.0e-31 139.8 236 40.7
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.6e-31 139.4 233 39.9
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 4.5e-31 138.7 119 57.1
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 5.8e-31 138.3 130 55.4
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 7.6e-31 137.9 182 44.5
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.3e-30 137.1 126 56.3
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 2.2e-30 136.3 124 56.5
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 2.9e-30 136.0 123 54.5
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 3.8e-30 135.6 122 55.7
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 3.8e-30 135.6 124 55.6
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 4.9e-30 135.2 210 40.5
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 8.4e-30 134.4 244 36.9
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 8.4e-30 134.4 118 53.4
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.1e-29 134.0 124 56.5
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 1.4e-29 133.7 124 56.5
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 1.9e-29 133.3 236 39.0
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.4e-29 132.9 143 53.8
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 3.2e-29 132.5 217 38.2
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 3.2e-29 132.5 158 47.5
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 4.2e-29 132.1 206 39.8
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 4.2e-29 132.1 206 39.8
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 4.2e-29 132.1 206 39.8
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.4e-29 131.7 206 39.8
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.4e-29 131.7 206 39.8
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 7.1e-29 131.3 151 47.7
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 7.1e-29 131.3 155 51.0
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 9.3e-29 131.0 124 55.6
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 1.2e-28 130.6 234 36.3
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 1.2e-28 130.6 150 48.7
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.2e-28 130.6 238 39.1
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 2.1e-28 129.8 126 51.6
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.1e-28 129.8 126 54.0
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.7e-28 129.4 144 50.7
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 2.7e-28 129.4 114 52.6
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 3.5e-28 129.0 234 36.3
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.6e-28 128.6 181 44.8
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 4.6e-28 128.6 119 53.8
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 7.9e-28 127.9 153 49.0
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 7.9e-28 127.9 130 50.0
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 7.9e-28 127.9 125 51.2
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 7.9e-28 127.9 126 50.8
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 7.9e-28 127.9 154 46.8
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.0e-27 127.5 122 53.3
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.0e-27 127.5 236 36.0
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.0e-27 127.5 151 47.0
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 1.3e-27 127.1 156 46.2
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.3e-27 127.1 123 54.5
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 1.3e-27 127.1 126 50.8
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 3.0e-27 125.9 126 52.4
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 5.1e-27 125.2 119 52.1
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 5.1e-27 125.2 119 54.6
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 5.1e-27 125.2 151 49.0
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 6.7e-27 124.8 156 44.9
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.1e-26 124.0 118 50.8
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 1.1e-26 124.0 144 47.9
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.5e-26 123.6 232 36.2
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.9e-26 123.2 122 50.8
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.9e-26 123.2 240 35.0
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.9e-26 123.2 245 35.9
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 3.3e-26 122.5 121 53.7
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 3.3e-26 122.5 145 46.9
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 5.6e-26 121.7 234 36.8
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 5.6e-26 121.7 234 35.5
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 7.4e-26 121.3 152 47.4
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 9.6e-26 120.9 218 39.4
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.3e-25 120.6 143 46.9
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 1.3e-25 120.6 150 44.7
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 2.8e-25 119.4 150 44.0
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 3.7e-25 119.0 228 32.9
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 3.7e-25 119.0 150 44.0
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 3.7e-25 119.0 118 50.8
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.8e-25 118.6 126 45.2
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.1e-24 117.5 155 42.6
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 2.4e-24 116.3 150 44.0
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 9.0e-24 114.4 143 46.2
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.4e-23 112.5 178 41.0
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 5.8e-23 111.7 107 50.5
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 1.9e-21 106.7 56 94.6
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 1.9e-21 106.7 56 94.6
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.2e-20 104.0 127 42.5
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 2.1e-20 103.2 122 52.5
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 3.9e-19 99.0 84 60.7
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 4.8e-17 92.0 100 46.0
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 7.6e-15 84.7 129 40.3
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 7.2e-13 78.2 127 36.2
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 6.5e-06 55.1 175 31.4


User provided reference genes

Program Settings