Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 4.0e-96 354.8 180 100.0
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 6.4e-94 347.4 188 95.7
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 4.3e-90 334.7 186 92.5
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 6.7e-83 310.8 181 89.5
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 6.7e-83 310.8 181 89.5
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 7.9e-68 260.8 174 81.0
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 4.5e-63 245.0 180 73.3
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 1.0e-62 243.8 181 72.4
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 4.2e-61 238.4 181 70.7
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 4.2e-61 238.4 181 70.7
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 4.2e-61 238.4 181 70.7
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 2.7e-60 235.7 165 75.8
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 7.9e-60 234.2 181 70.2
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 2.3e-59 232.6 181 69.6
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 4.4e-58 228.4 180 71.1
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 8.2e-57 224.2 169 72.2
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 2.7e-52 209.1 180 66.1
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 4.4e-42 175.3 166 64.5
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 7.5e-42 174.5 203 52.2
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.9e-38 162.5 106 80.2
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 2.8e-33 146.0 208 49.5
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 2.8e-33 146.0 208 49.5
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 2.8e-33 146.0 208 49.5
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 4.8e-33 145.2 212 48.6
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 2.7e-31 139.4 213 48.4
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 7.7e-31 137.9 215 47.0
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 1.7e-30 136.7 213 47.4
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 5.0e-30 135.2 213 46.0
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 6.5e-30 134.8 211 46.9
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 4.2e-29 132.1 208 46.6
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 4.0e-27 125.6 199 43.7
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 5.7e-26 121.7 234 41.5
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 5.7e-26 121.7 216 43.1
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.3e-25 120.6 201 44.8
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 1.8e-24 116.7 200 45.5
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 1.0e-22 110.9 198 43.4
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 6.6e-22 108.2 214 41.1
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 8.6e-22 107.8 233 38.6
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 8.6e-22 107.8 233 38.6
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 8.6e-22 107.8 233 38.6
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 5.6e-21 105.1 206 37.9
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 5.6e-21 105.1 206 37.9
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 9.5e-21 104.4 192 42.7
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 2.3e-19 99.8 194 41.8
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 6.8e-19 98.2 215 39.1
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 6.4e-17 91.7 107 52.3
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 3.5e-15 85.9 104 51.0
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 2.3e-14 83.2 102 52.9
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.3e-14 83.2 99 49.5
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 2.3e-14 83.2 99 49.5
CARHR022610 Cardamine hirsuta HOM05D002704 ORTHO05D002891 3.0e-14 82.8 76 63.2
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 3.0e-14 82.8 94 53.2
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 8.6e-14 81.3 121 46.3
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 8.6e-14 81.3 98 49.0
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.1e-13 80.9 99 48.5
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 1.5e-13 80.5 111 47.7
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 1.9e-13 80.1 57 63.2
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 2.5e-13 79.7 149 40.9
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 3.3e-13 79.3 107 45.8
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 3.3e-13 79.3 157 40.1
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 4.3e-13 79.0 100 50.0
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 5.6e-13 78.6 103 49.5
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 5.6e-13 78.6 102 44.1
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 1.2e-12 77.4 103 51.5
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.2e-12 77.4 51 68.6
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 1.6e-12 77.0 99 48.5
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.6e-12 77.0 102 47.1
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 1.6e-12 77.0 147 39.5
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 1.6e-12 77.0 109 48.6
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 2.8e-12 76.3 114 48.2
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 2.8e-12 76.3 128 40.6
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 2.8e-12 76.3 136 42.6
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 2.8e-12 76.3 129 43.4
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 3.6e-12 75.9 98 53.1
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 3.6e-12 75.9 98 53.1
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 3.6e-12 75.9 97 49.5
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 4.7e-12 75.5 196 35.2
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 6.2e-12 75.1 160 36.2
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 6.2e-12 75.1 58 60.3
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 6.2e-12 75.1 144 39.6
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 6.2e-12 75.1 98 45.9
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 8.0e-12 74.7 100 45.0
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 8.0e-12 74.7 109 43.1
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 8.0e-12 74.7 212 31.6
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.1e-11 74.3 131 41.2
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.4e-11 73.9 62 56.5
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 1.4e-11 73.9 105 44.8
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 1.8e-11 73.6 106 43.4
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.8e-11 73.6 165 37.0
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 3.1e-11 72.8 94 48.9
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 3.1e-11 72.8 50 66.0
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 3.1e-11 72.8 107 43.0
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 4.0e-11 72.4 144 36.1
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 4.0e-11 72.4 50 60.0
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 5.2e-11 72.0 71 54.9
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 5.2e-11 72.0 81 51.9
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 5.2e-11 72.0 109 45.9
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 6.8e-11 71.6 94 50.0
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 8.9e-11 71.2 116 42.2
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 8.9e-11 71.2 117 45.3
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 1.2e-10 70.9 110 42.7
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 1.2e-10 70.9 190 34.2
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.2e-10 70.9 97 45.4
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 1.2e-10 70.9 124 42.7
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.2e-10 70.9 104 42.3
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 1.5e-10 70.5 110 44.5
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 2.0e-10 70.1 81 45.7
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 2.6e-10 69.7 111 38.7
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 2.6e-10 69.7 104 45.2
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 2.6e-10 69.7 97 47.4
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.4e-10 69.3 94 45.7
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 3.4e-10 69.3 108 42.6
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.4e-10 69.3 89 47.2
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 4.4e-10 68.9 110 44.5
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 4.4e-10 68.9 95 48.4
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 4.4e-10 68.9 146 39.7
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 4.4e-10 68.9 113 42.5
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 4.4e-10 68.9 94 45.7
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 5.8e-10 68.6 100 45.0
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 5.8e-10 68.6 98 44.9
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 9.8e-10 67.8 173 34.7
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 9.8e-10 67.8 90 47.8
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 1.7e-09 67.0 181 32.6
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 2.2e-09 66.6 48 64.6
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 2.2e-09 66.6 94 47.9
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 2.2e-09 66.6 176 35.2
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.2e-09 66.6 98 43.9
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 2.2e-09 66.6 135 37.8
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 2.9e-09 66.2 100 44.0
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 2.9e-09 66.2 109 42.2
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.7e-09 65.9 104 43.3
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 6.4e-09 65.1 98 44.9
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 8.3e-09 64.7 98 43.9
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.1e-08 64.3 106 41.5
unitig_578.g16524 Utricularia gibba HOM05D002704 ORTHO05D002891 1.1e-08 64.3 96 41.7
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.4e-08 63.9 94 44.7
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 2.4e-08 63.2 104 43.3
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 3.2e-08 62.8 108 42.6
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 3.2e-08 62.8 50 64.0
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 3.2e-08 62.8 104 42.3
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 4.1e-08 62.4 172 32.0
Thhalv10028969m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 4.1e-08 62.4 178 36.0
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 4.1e-08 62.4 94 43.6
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 4.1e-08 62.4 42 64.3
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 7.0e-08 61.6 50 62.0
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 7.0e-08 61.6 50 62.0
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 7.0e-08 61.6 100 46.0
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 9.2e-08 61.2 50 62.0
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 9.2e-08 61.2 67 49.3
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.2e-07 60.8 44 65.9
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 1.2e-07 60.8 98 41.8
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 1.2e-07 60.8 95 42.1
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 2.7e-07 59.7 94 43.6
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 3.5e-07 59.3 168 35.7
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 3.5e-07 59.3 40 62.5
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 3.5e-07 59.3 101 39.6
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 6.0e-07 58.5 178 30.3
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 7.8e-07 58.2 44 59.1
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 1.0e-06 57.8 102 40.2
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.0e-06 57.8 31 77.4
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.3e-06 57.4 178 30.9
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 1.7e-06 57.0 219 29.2
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 2.3e-06 56.6 132 34.8
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 5.0e-06 55.5 181 31.5
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 6.6e-06 55.1 94 39.4
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 8.6e-06 54.7 96 36.5
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 8.6e-06 54.7 31 71.0


User provided reference genes

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