Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 0.0e+00 3385.1 1847 100.0
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 3060.8 2069 83.9
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 0.0e+00 3056.2 2069 83.8
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 0.0e+00 2136.3 2232 61.1
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 0.0e+00 2062.0 2236 59.0
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 0.0e+00 1922.5 2211 57.6
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 0.0e+00 1834.7 2048 57.3
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 1777.7 1997 57.9
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 0.0e+00 1768.4 1997 57.6
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 0.0e+00 1744.6 2031 55.9
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 0.0e+00 1716.8 1954 57.3
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 0.0e+00 1706.4 1960 57.0
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 0.0e+00 1617.1 2136 52.3
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 0.0e+00 1313.5 2200 45.2
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 1291.2 1410 58.9
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 0.0e+00 1083.2 2127 42.1
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 9.9e-174 615.9 1372 38.4
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.0e-149 536.2 1837 31.7
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 2.2e-149 535.0 2073 30.9
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 4.6e-147 527.3 1965 29.9
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 6.1e-147 526.9 2109 29.4
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 6.3e-144 516.9 1834 31.5
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 1.1e-143 516.2 789 47.1
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.1e-143 514.6 2040 30.3
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.3e-141 509.2 2095 30.5
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 2.2e-141 508.4 2083 30.3
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 8.5e-141 506.5 834 46.0
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 4.7e-139 500.7 791 47.2
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 6.1e-139 500.4 2016 30.4
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 3.9e-138 497.7 774 47.3
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 5.2e-138 497.3 1900 30.6
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 5.2e-138 497.3 1801 31.7
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 7.4e-137 493.4 1960 31.2
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.3e-136 492.7 838 45.0
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 1.7e-136 492.3 1966 30.5
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 1.1e-135 489.6 1824 31.6
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 7.7e-134 483.4 773 45.5
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 3.8e-133 481.1 816 45.0
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 1.1e-132 479.6 770 46.2
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 5.5e-132 477.2 802 45.6
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.1e-131 475.3 802 45.5
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 8.0e-131 473.4 884 42.3
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 2.3e-130 471.9 788 45.4
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.0e-130 471.5 777 45.8
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.0e-130 471.5 914 42.6
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.0e-130 471.1 914 43.0
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.2e-129 469.5 1974 30.6
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 3.3e-129 468.0 2017 30.0
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 3.3e-129 468.0 788 46.1
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 7.5e-129 466.8 1805 30.5
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 9.7e-129 466.5 913 42.7
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 9.7e-129 466.5 779 44.7
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 2.8e-128 464.9 1989 30.2
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 3.7e-128 464.5 787 45.2
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.8e-127 462.2 1838 31.3
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 1.8e-127 462.2 723 46.2
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.4e-127 461.8 743 45.4
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 2.7e-126 458.4 1851 31.2
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 4.5e-126 457.6 1819 31.4
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 5.9e-126 457.2 745 45.2
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 7.7e-126 456.8 1783 31.1
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 6.5e-125 453.8 769 45.4
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.3e-122 445.3 1890 31.0
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 8.8e-122 443.4 731 46.1
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 2.0e-121 442.2 1870 30.6
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 3.7e-120 438.0 482 57.7
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 1.4e-119 436.0 789 42.6
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 7.0e-119 433.7 805 43.2
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 9.1e-119 433.3 761 45.1
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 2.3e-117 428.7 755 41.3
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 5.0e-117 427.6 1810 29.9
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 6.5e-117 427.2 1670 30.4
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 4.7e-115 421.0 705 45.0
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 8.3e-112 410.2 788 41.6
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.4e-111 409.5 785 42.7
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 5.4e-111 407.5 792 42.2
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.0e-110 405.6 818 36.8
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 5.9e-110 404.1 841 41.3
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 7.8e-110 403.7 830 39.4
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 7.8e-110 403.7 782 43.4
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 3.8e-109 401.4 677 45.2
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 8.6e-109 400.2 772 42.5
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 8.6e-109 400.2 864 39.6
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.9e-108 399.1 863 40.4
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 2.1e-107 395.6 745 41.9
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 3.0e-106 391.7 603 44.3
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 4.6e-102 377.9 796 39.4
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.3e-101 376.3 1778 29.5
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 1.4e-98 366.3 789 39.5
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 4.4e-97 361.3 916 37.7
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 9.8e-97 360.1 914 37.6
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 1.3e-96 359.8 970 34.5
BraA06t24858Z Brassica rapa HOM05D000237 ORTHO05D006530 6.0e-94 350.9 240 79.6
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 3.0e-93 348.6 932 36.1
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.5e-92 346.3 493 48.5
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 1.5e-89 336.3 1757 28.3
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.2e-88 332.4 638 39.3
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.2e-86 326.6 763 39.7
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 7.8e-86 323.9 767 38.2
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 1.7e-85 322.8 669 40.1
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.4e-82 313.2 725 39.2
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 4.0e-82 311.6 480 43.8
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 3.4e-81 308.5 782 37.6
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 3.2e-79 302.0 829 35.6
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 2.7e-78 298.9 665 38.5
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 2.3e-77 295.8 792 35.1
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 2.4e-71 275.8 590 40.5
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 2.3e-69 269.2 829 34.6
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 5.6e-68 264.6 336 51.8
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 5.6e-68 264.6 896 31.8
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 6.4e-64 251.1 546 36.4
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 3.5e-62 245.4 257 53.7
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 2.9e-56 225.7 1530 26.1
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 1.2e-49 203.8 491 38.5
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 5.8e-49 201.4 279 49.5
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 2.1e-46 193.0 224 51.3
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 4.6e-46 191.8 593 33.7
BcaC04g19090 Brassica carinata HOM05D001762 ORTHO05D001774 1.1e-34 154.1 106 75.5
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 7.7e-33 147.9 136 58.8
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 5.5e-31 141.7 198 41.4
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 5.7e-28 131.7 81 79.0
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 8.2e-27 127.9 1589 23.6
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.2e-25 124.0 1434 24.3
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 3.5e-25 122.5 649 30.5
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 7.7e-25 121.3 740 25.9
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.4e-18 99.8 204 47.1
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.3e-16 94.0 238 32.4
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 4.7e-14 85.5 94 53.2
BcaB03g12812 Brassica carinata HOM05D000237 ORTHO05D006530 8.0e-14 84.7 65 70.8
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.0e-13 84.3 136 45.6
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 2.6e-12 79.7 139 39.6
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 3.3e-12 79.3 261 30.7
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.1e-10 74.3 121 36.4
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.8e-10 73.6 338 28.4
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.5e-09 69.3 240 29.2
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.5e-07 63.2 128 37.5
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 4.2e-07 62.4 254 31.9


User provided reference genes

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