Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 2.1e-64 248.8 120 100.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 2.1e-64 248.8 120 100.0
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 7.9e-64 246.9 120 98.3
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.0e-63 246.5 120 98.3
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 6.7e-63 243.8 120 98.3
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 2.5e-62 241.9 120 96.7
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 9.0e-60 233.4 120 90.8
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 9.0e-60 233.4 120 90.8
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 9.0e-60 233.4 120 90.8
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 9.0e-60 233.4 120 90.8
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 3.4e-59 231.5 120 90.0
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 3.4e-59 231.5 120 90.0
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.3e-58 229.6 120 90.0
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.5e-57 225.3 120 88.3
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.2e-57 224.6 120 88.3
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.7e-56 221.9 120 87.5
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 3.5e-56 221.5 120 86.7
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.9e-54 215.7 120 85.0
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 3.7e-53 211.5 120 82.5
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 4.8e-53 211.1 120 82.5
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.7e-50 202.6 121 79.3
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.8e-50 201.4 121 81.0
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.5e-50 200.7 121 81.0
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 8.5e-50 200.3 121 81.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 3.8e-42 174.9 121 69.4
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 7.7e-35 150.6 120 60.0
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 3.8e-34 148.3 120 60.0
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.9e-33 146.0 120 58.3
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.5e-33 145.6 122 60.7
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 4.2e-33 144.8 119 58.8
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 8.0e-32 140.6 120 57.5
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.8e-31 139.4 117 58.1
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 3.9e-31 138.3 112 58.0
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 2.0e-30 136.0 121 54.5
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 2.0e-30 136.0 121 58.7
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 4.4e-30 134.8 115 58.3
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 4.4e-30 134.8 120 55.0
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 7.4e-30 134.0 120 52.5
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 2.2e-29 132.5 120 55.0
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 2.8e-29 132.1 120 51.7
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 2.8e-29 132.1 120 53.3
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 3.7e-29 131.7 120 55.0
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 4.8e-29 131.3 120 51.7
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 4.8e-29 131.3 121 55.4
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 6.3e-29 131.0 120 55.0
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 8.2e-29 130.6 120 55.0
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 8.2e-29 130.6 122 54.9
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 53.3
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.4e-28 129.8 112 55.4
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 5.3e-28 127.9 118 48.3
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 7.0e-28 127.5 110 53.6
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 1.6e-27 126.3 120 52.5
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 2.0e-27 125.9 121 53.7
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 2.0e-27 125.9 120 52.5
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 3.5e-27 125.2 117 53.0
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 7.7e-27 124.0 121 50.4
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 1.0e-26 123.6 114 49.1
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 2.2e-26 122.5 124 50.0
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 2.9e-26 122.1 122 47.5
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 3.8e-26 121.7 120 51.7
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.0e-26 121.3 120 50.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.0e-26 121.3 120 50.8
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 5.0e-26 121.3 116 51.7
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 5.0e-26 121.3 116 51.7
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 6.5e-26 120.9 117 49.6
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.1e-25 120.2 118 48.3
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 1.9e-25 119.4 116 50.0
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 2.5e-25 119.0 90 72.2
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.5e-25 119.0 119 49.6
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.5e-25 119.0 121 48.8
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 3.2e-25 118.6 121 47.9
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 4.2e-25 118.2 114 50.0
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.2e-25 118.2 120 49.2
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.2e-25 118.2 120 49.2
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 4.2e-25 118.2 120 49.2
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 4.2e-25 118.2 113 50.4
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 7.2e-25 117.5 123 48.0
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 7.2e-25 117.5 123 48.0
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 9.4e-25 117.1 122 47.5
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 9.4e-25 117.1 124 50.8
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 9.4e-25 117.1 120 50.0
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.2e-24 116.7 68 80.9
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 1.6e-24 116.3 120 50.0
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 1.6e-24 116.3 120 50.0
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 6.1e-24 114.4 116 48.3
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 1.0e-23 113.6 117 45.3
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.0e-23 112.1 124 53.2
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 4.0e-23 111.7 124 52.4
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 6.7e-23 110.9 124 46.0
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 8.8e-23 110.5 113 46.0
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 2.0e-22 109.4 116 49.1
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 5.7e-22 107.8 124 44.4
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 5.7e-22 107.8 111 47.7
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.3e-21 106.7 124 42.7
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 2.8e-21 105.5 107 51.4
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 3.1e-20 102.1 117 43.6
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 7.0e-20 100.9 107 51.4
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 9.1e-20 100.5 118 39.8
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.2e-19 100.1 113 47.8
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 1.6e-19 99.8 121 48.8
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 4.5e-19 98.2 62 72.6
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 2.2e-18 95.9 115 40.9
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.1e-17 93.6 108 41.7
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.9e-17 92.8 118 39.8
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 3.2e-17 92.0 123 38.2
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 3.2e-17 92.0 99 46.5
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 9.4e-17 90.5 96 46.9
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.4e-15 86.7 119 40.3
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.2e-14 83.6 53 73.6
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 7.5e-14 80.9 150 30.7
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 7.5e-14 80.9 88 42.0
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.2e-13 79.3 66 54.5
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 8.3e-13 77.4 91 38.5
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 1.1e-12 77.0 60 51.7
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.2e-11 73.6 79 51.9
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.5e-11 72.0 70 51.4
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 5.9e-11 71.2 122 34.4
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 5.9e-11 71.2 67 53.7
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.0e-10 70.5 76 47.4
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.3e-10 70.1 69 56.5
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 2.9e-10 68.9 67 53.7
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 8.6e-10 67.4 53 54.7
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.1e-09 67.0 108 34.3
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 1.5e-09 66.6 71 50.7
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 2.5e-09 65.9 48 60.4
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 2.5e-09 65.9 71 49.3
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 7.2e-09 64.3 74 43.2
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 3.6e-08 62.0 54 51.9
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.4e-07 60.1 77 41.6
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 2.3e-07 59.3 127 29.9
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 6.8e-07 57.8 39 59.0
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 2.6e-06 55.8 44 56.8
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 2.6e-06 55.8 44 56.8
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 4.4e-06 55.1 91 34.1
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 5.7e-06 54.7 40 60.0
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 7.5e-06 54.3 123 27.6


User provided reference genes

Program Settings