Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25851 Brassica carinata HOM05D001285 ORTHO05D000199 7.2e-37 156.8 80 100.0
C09p65960 Brassica napus HOM05D001285 ORTHO05D000199 1.4e-24 115.9 72 84.7
BcaC04g19281 Brassica carinata HOM05D001285 ORTHO05D000199 1.2e-23 112.8 67 88.1
BolC9t59419H Brassica oleracea HOM05D001285 ORTHO05D000199 1.2e-23 112.8 67 88.1
BolC7t42880H Brassica oleracea HOM05D001285 ORTHO05D000199 5.9e-23 110.5 67 86.6
A02p36810 Brassica napus HOM05D001285 ORTHO05D000199 1.0e-22 109.8 67 85.1
BraA02t08672Z Brassica rapa HOM05D001285 ORTHO05D000199 1.0e-22 109.8 67 85.1
BcaB01g02953 Brassica carinata HOM05D001285 ORTHO05D000199 5.1e-19 97.4 58 81.0
BraA05t20822Z Brassica rapa HOM05D001285 ORTHO05D000199 5.1e-19 97.4 67 76.1
BcaC03g15380 Brassica carinata HOM05D001285 ORTHO05D000199 1.1e-18 96.3 67 74.6
BolC3t18089H Brassica oleracea HOM05D001285 ORTHO05D000199 1.1e-18 96.3 67 74.6
BolC9t57745H Brassica oleracea HOM05D001285 ORTHO05D000199 1.1e-18 96.3 67 74.6
BcaB01g01002 Brassica carinata HOM05D001285 ORTHO05D000199 1.5e-18 95.9 58 79.3
BcaC03g17060 Brassica carinata HOM05D001285 ORTHO05D000199 2.6e-18 95.1 67 74.6
C02p49780 Brassica napus HOM05D001285 ORTHO05D000199 2.6e-18 95.1 67 74.6
BcaC01g00776 Brassica carinata HOM05D001285 ORTHO05D000199 5.3e-16 87.4 67 64.2
A07p07280 Brassica napus HOM05D000073 ORTHO05D000199 5.3e-16 87.4 67 64.2
C01p48530 Brassica napus HOM05D001285 ORTHO05D000199 5.3e-16 87.4 67 67.2
BraA07t28518Z Brassica rapa HOM05D001285 ORTHO05D000199 5.3e-16 87.4 67 64.2
BcaC08g43217 Brassica carinata HOM05D001285 ORTHO05D000199 9.1e-16 86.7 67 62.7
BcaC04g20925 Brassica carinata HOM05D001285 ORTHO05D000199 1.2e-15 86.3 67 62.7
C09p37840 Brassica napus HOM05D001285 ORTHO05D000199 1.2e-15 86.3 67 62.7
BcaC03g17494 Brassica carinata HOM05D001285 ORTHO05D000199 2.0e-15 85.5 67 65.7
BcaB01g02964 Brassica carinata HOM05D001285 ORTHO05D000199 2.6e-15 85.1 67 62.7
BcaB06g26565 Brassica carinata HOM05D001285 ORTHO05D000199 2.6e-15 85.1 67 62.7
BcaC06g36181 Brassica carinata HOM05D001285 ORTHO05D000199 2.6e-15 85.1 75 58.7
BolC2t07251H Brassica oleracea HOM05D001285 ORTHO05D000199 4.5e-15 84.3 67 62.7
BraA01t02157Z Brassica rapa HOM05D001285 ORTHO05D000199 5.9e-15 84.0 67 61.2
BcaC08g43241 Brassica carinata HOM05D001285 ORTHO05D000199 5.0e-14 80.9 68 58.8
BcaC05g27109 Brassica carinata HOM05D001285 ORTHO05D000199 6.5e-14 80.5 64 62.5
C05p29930 Brassica napus HOM05D001285 ORTHO05D000199 6.5e-14 80.5 64 62.5
C09p07350 Brassica napus HOM05D001285 ORTHO05D000199 6.5e-14 80.5 68 58.8
BcaC08g45763 Brassica carinata HOM05D001285 ORTHO05D000199 8.5e-14 80.1 67 68.7
C06p24210 Brassica napus HOM05D001285 ORTHO05D000199 8.5e-14 80.1 56 75.0
BolC6t37227H Brassica oleracea HOM05D001285 ORTHO05D000199 8.5e-14 80.1 68 58.8
BcaC05g29508 Brassica carinata HOM05D001285 ORTHO05D000199 1.1e-13 79.7 68 58.8
BcaC07g41709 Brassica carinata HOM05D001285 ORTHO05D000199 1.1e-13 79.7 68 58.8
BraA01t01846Z Brassica rapa HOM05D001285 ORTHO05D000199 1.1e-13 79.7 68 58.8
BraSC41t46221Z Brassica rapa HOM05D001285 ORTHO05D000199 1.1e-13 79.7 68 58.8
BraA02t08380Z Brassica rapa HOM05D001285 ORTHO05D000199 1.5e-13 79.3 75 56.0
BraA03t11415Z Brassica rapa HOM05D001285 ORTHO05D000199 1.5e-13 79.3 62 61.3
BolC5t31727H Brassica oleracea HOM05D001285 ORTHO05D000199 2.5e-13 78.6 68 58.8
BraA06t25593Z Brassica rapa HOM05D001285 ORTHO05D000199 2.5e-13 78.6 68 57.4
C02p17470 Brassica napus HOM05D001285 ORTHO05D000199 9.4e-13 76.6 68 57.4
BolC2t07862H Brassica oleracea HOM05D001285 ORTHO05D000199 9.4e-13 76.6 68 57.4
BcaB03g15580 Brassica carinata HOM05D001285 ORTHO05D000199 8.0e-12 73.6 67 59.7
BcaC06g30937 Brassica carinata HOM05D001285 ORTHO05D000199 1.0e-11 73.2 67 59.7
BcaC03g16214 Brassica carinata HOM05D001285 ORTHO05D000199 1.4e-11 72.8 67 58.2
C03p76530 Brassica napus HOM05D032057 ORTHO05D000199 1.4e-11 72.8 56 64.3
C06p08290 Brassica napus HOM05D001285 ORTHO05D000199 6.3e-09 63.9 46 69.6
BraA03t13038Z Brassica rapa HOM05D001285 ORTHO05D000199 1.1e-08 63.2 41 78.0
BraA03t13383Z Brassica rapa HOM05D001285 ORTHO05D000199 1.1e-08 63.2 41 78.0
A06p22000 Brassica napus HOM05D001285 ORTHO05D000199 1.8e-08 62.4 67 47.8
BolC6t35910H Brassica oleracea HOM05D001285 ORTHO05D000199 1.8e-08 62.4 46 67.4
CARHR150330 Cardamine hirsuta HOM05D001285 ORTHO05D000199 5.3e-08 60.8 67 43.3
C04p12430 Brassica napus HOM05D001285 ORTHO05D000199 7.0e-08 60.5 41 73.2
AL8G21960 Arabidopsis lyrata HOM05D001285 ORTHO05D000199 1.2e-07 59.7 67 44.8
AL6G41380 Arabidopsis lyrata HOM05D001285 ORTHO05D000199 1.6e-07 59.3 79 39.2
AL7G43910 Arabidopsis lyrata HOM05D001285 ORTHO05D000199 1.6e-07 59.3 67 44.8
BolC6t38666H Brassica oleracea HOM05D001285 ORTHO05D000199 1.6e-07 59.3 56 62.5
AL1G51180 Arabidopsis lyrata HOM05D001285 ORTHO05D000199 2.0e-07 58.9 67 44.8
AL4G17640 Arabidopsis lyrata HOM05D001285 ORTHO05D000199 2.0e-07 58.9 67 44.8
AL6G43460 Arabidopsis lyrata HOM05D001285 ORTHO05D000199 2.0e-07 58.9 67 44.8
BraA05t21432Z Brassica rapa HOM05D001285 ORTHO05D000199 2.0e-07 58.9 67 46.3
C06p35450 Brassica napus HOM05D001285 ORTHO05D000199 2.7e-07 58.5 29 96.6
Carub.0013s0001 Capsella rubella HOM05D001285 ORTHO05D000199 2.7e-07 58.5 79 39.2
A10p12120 Brassica napus HOM05D001285 ORTHO05D000199 4.5e-07 57.8 67 43.3
C02p41800 Brassica napus HOM05D001285 ORTHO05D000199 4.5e-07 57.8 67 43.3
AL3G42580 Arabidopsis lyrata HOM05D001285 ORTHO05D000199 5.9e-07 57.4 67 44.8
A08p03050 Brassica napus HOM05D001285 ORTHO05D000199 5.9e-07 57.4 67 44.8
C02p57920 Brassica napus HOM05D001285 ORTHO05D000199 5.9e-07 57.4 67 43.3
C04p60190 Brassica napus HOM05D001285 ORTHO05D000199 5.9e-07 57.4 67 44.8
BolC2t11860H Brassica oleracea HOM05D001285 ORTHO05D000199 5.9e-07 57.4 67 43.3
CARHR159300 Cardamine hirsuta HOM05D001285 ORTHO05D000199 5.9e-07 57.4 67 43.3
CARHR215510 Cardamine hirsuta HOM05D001285 ORTHO05D000199 7.7e-07 57.0 79 35.4
BcaB01g00219 Brassica carinata HOM05D001285 ORTHO05D000199 1.0e-06 56.6 67 41.8
C05p34550 Brassica napus HOM05D001285 ORTHO05D032402 1.0e-06 56.6 64 51.6
CARHR258020 Cardamine hirsuta HOM05D001285 ORTHO05D000199 1.0e-06 56.6 75 40.0
BolC9t57594H Brassica oleracea HOM05D001285 ORTHO05D000199 1.3e-06 56.2 67 43.3
CARHR037550 Cardamine hirsuta HOM05D001285 ORTHO05D000199 1.3e-06 56.2 79 36.7
C03p70020 Brassica napus HOM05D001285 ORTHO05D000199 1.7e-06 55.8 67 41.8
BcaB02g11283 Brassica carinata HOM05D001285 ORTHO05D000199 2.2e-06 55.5 67 41.8
BcaB03g15495 Brassica carinata HOM05D001285 ORTHO05D000199 2.2e-06 55.5 67 41.8
BcaB03g15497 Brassica carinata HOM05D001285 ORTHO05D000199 2.2e-06 55.5 67 41.8
BcaB03g16401 Brassica carinata HOM05D001285 ORTHO05D000199 2.2e-06 55.5 67 41.8
BcaB03g16504 Brassica carinata HOM05D001285 ORTHO05D000199 2.2e-06 55.5 54 51.9
AL4G10770 Arabidopsis lyrata HOM05D001285 ORTHO05D000199 2.9e-06 55.1 67 41.8
BcaC05g27489 Brassica carinata HOM05D001285 ORTHO05D032402 2.9e-06 55.1 60 55.0
AT5G45570 Arabidopsis thaliana HOM05D001285 ORTHO05D000199 3.8e-06 54.7 75 36.0
Thhalv10002824m.g Eutrema salsugineum HOM05D001285 ORTHO05D000199 3.8e-06 54.7 68 44.1
Thhalv10029261m.g Eutrema salsugineum HOM05D001285 ORTHO05D000199 3.8e-06 54.7 68 44.1
CARHR104690 Cardamine hirsuta HOM05D001285 ORTHO05D000199 8.5e-06 53.5 75 38.7


User provided reference genes

Program Settings