Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001285', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '487', 'num_species' => '12' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p19020' => 'bna', 'A01p27250' => 'bna', 'A01p27760' => 'bna', 'A02p21060' => 'bna', 'A02p21070' => 'bna', 'A02p24110' => 'bna', 'A02p26970' => 'bna', 'A02p26990' => 'bna', 'A02p27370' => 'bna', 'A02p31600' => 'bna', 'A02p33590' => 'bna', 'A02p36790' => 'bna', 'A02p36800' => 'bna', 'A02p36810' => 'bna', 'A03p39280' => 'bna', 'A03p66480' => 'bna', 'A05p01380' => 'bna', 'A05p16830' => 'bna', 'A05p21700' => 'bna', 'A05p23270' => 'bna', 'A06p14650' => 'bna', 'A06p14660' => 'bna', 'A06p22000' => 'bna', 'A06p36190' => 'bna', 'A07p09780' => 'bna', 'A08p03050' => 'bna', 'A09p14520' => 'bna', 'A09p21670' => 'bna', 'A09p24270' => 'bna', 'A09p31280' => 'bna', 'A09p31290' => 'bna', 'A09p31300' => 'bna', 'A10p07020' => 'bna', 'A10p10700' => 'bna', 'A10p12120' => 'bna', 'A10p12130' => 'bna', 'A10p12140' => 'bna', 'Aa31csc1523G10' => 'aar', 'Aa31LG10G6700' => 'aar', 'Aa31LG11G8450' => 'aar', 'Aa31LG11G8460' => 'aar', 'Aa31LG11G8470' => 'aar', 'Aa31LG1G3610' => 'aar', 'Aa31LG1G6910' => 'aar', 'Aa31LG1G6920' => 'aar', 'Aa31LG2G16260' => 'aar', 'Aa31LG3G1850' => 'aar', 'Aa31LG5G20540' => 'aar', 'Aa31LG5G23320' => 'aar', 'Aa31LG6G12780' => 'aar', 'Aa31LG6G5080' => 'aar', 'Aa31LG6G7610' => 'aar', 'Aa31LG8G11960' => 'aar', 'Aa31LG8G11990' => 'aar', 'Aa31LG8G12130' => 'aar', 'Aa31sc112G40' => 'aar', 'Aa31sc112G50' => 'aar', 'Aa31sc119G70' => 'aar', 'Aa31sc119G80' => 'aar', 'Aa31sc20G160' => 'aar', 'Aa31sc251G20' => 'aar', 'Aa31sc251G30' => 'aar', 'Aa31sc478G30' => 'aar', 'Aa31sc478G40' => 'aar', 'Aa31sc49G40' => 'aar', 'Aa31sc86G90' => 'aar', 'AL1G47430' => 'aly', 'AL1G51180' => 'aly', 'AL1G60090' => 'aly', 'AL1G65960' => 'aly', 'AL3G30210' => 'aly', 'AL3G40680' => 'aly', 'AL3G42580' => 'aly', 'AL3G44690' => 'aly', 'AL3G44710' => 'aly', 'AL3G45080' => 'aly', 'AL3G45110' => 'aly', 'AL3G45900' => 'aly', 'AL4G10770' => 'aly', 'AL4G17640' => 'aly', 'AL4G18390' => 'aly', 'AL4G20190' => 'aly', 'AL5G16910' => 'aly', 'AL5G16920' => 'aly', 'AL6G39290' => 'aly', 'AL6G40760' => 'aly', 'AL6G41380' => 'aly', 'AL6G42160' => 'aly', 'AL6G43460' => 'aly', 'AL7G43700' => 'aly', 'AL7G43910' => 'aly', 'AL7G45060' => 'aly', 'AL8G19130' => 'aly', 'AL8G21960' => 'aly', 'AL8G24550' => 'aly', 'AT1G37020' => 'ath', 'AT1G42525' => 'ath', 'AT2G10260' => 'ath', 'AT3G30305' => 'ath', 'AT3G31910' => 'ath', 'AT4G08430' => 'ath', 'AT5G28235' => 'ath', 'AT5G28810' => 'ath', 'AT5G45570' => 'ath', 'BcaB01g00219' => 'bca', 'BcaB01g01002' => 'bca', 'BcaB01g01138' => 'bca', 'BcaB01g02952' => 'bca', 'BcaB01g02953' => 'bca', 'BcaB01g02964' => 'bca', 'BcaB02g07816' => 'bca', 'BcaB02g11091' => 'bca', 'BcaB02g11283' => 'bca', 'BcaB02g11542' => 'bca', 'BcaB02g11543' => 'bca', 'BcaB03g15494' => 'bca', 'BcaB03g15495' => 'bca', 'BcaB03g15497' => 'bca', 'BcaB03g15498' => 'bca', 'BcaB03g15573' => 'bca', 'BcaB03g15580' => 'bca', 'BcaB03g16174' => 'bca', 'BcaB03g16262' => 'bca', 'BcaB03g16401' => 'bca', 'BcaB03g16504' => 'bca', 'BcaB04g17409' => 'bca', 'BcaB04g17599' => 'bca', 'BcaB04g17928' => 'bca', 'BcaB05g23429' => 'bca', 'BcaB05g23430' => 'bca', 'BcaB05g23483' => 'bca', 'BcaB06g25750' => 'bca', 'BcaB06g26565' => 'bca', 'BcaB06g26759' => 'bca', 'BcaB06g26823' => 'bca', 'BcaB06g28698' => 'bca', 'BcaB07g32960' => 'bca', 'BcaB07g32961' => 'bca', 'BcaB07g32962' => 'bca', 'BcaB07g33409' => 'bca', 'BcaB07g33410' => 'bca', 'BcaB08g35036' => 'bca', 'BcaB08g35296' => 'bca', 'BcaB08g35301' => 'bca', 'BcaC01g00776' => 'bca', 'BcaC01g02097' => 'bca', 'BcaC01g02155' => 'bca', 'BcaC01g02156' => 'bca', 'BcaC01g02157' => 'bca', 'BcaC02g10464' => 'bca', 'BcaC02g10993' => 'bca', 'BcaC02g10994' => 'bca', 'BcaC02g10995' => 'bca', 'BcaC02g11078' => 'bca', 'BcaC02g12762' => 'bca', 'BcaC03g14913' => 'bca', 'BcaC03g15031' => 'bca', 'BcaC03g15380' => 'bca', 'BcaC03g16214' => 'bca', 'BcaC03g16251' => 'bca', 'BcaC03g16362' => 'bca', 'BcaC03g16409' => 'bca', 'BcaC03g17060' => 'bca', 'BcaC03g17494' => 'bca', 'BcaC03g17776' => 'bca', 'BcaC04g19281' => 'bca', 'BcaC04g20925' => 'bca', 'BcaC05g25851' => 'bca', 'BcaC05g25966' => 'bca', 'BcaC05g27108' => 'bca', 'BcaC05g27109' => 'bca', 'BcaC05g27489' => 'bca', 'BcaC05g27865' => 'bca', 'BcaC05g28112' => 'bca', 'BcaC05g29508' => 'bca', 'BcaC05g30530' => 'bca', 'BcaC06g30937' => 'bca', 'BcaC06g34326' => 'bca', 'BcaC06g35842' => 'bca', 'BcaC06g35872' => 'bca', 'BcaC06g36181' => 'bca', 'BcaC07g38661' => 'bca', 'BcaC07g41709' => 'bca', 'BcaC07g41747' => 'bca', 'BcaC08g43217' => 'bca', 'BcaC08g43241' => 'bca', 'BcaC08g43423' => 'bca', 'BcaC08g44187' => 'bca', 'BcaC08g44579' => 'bca', 'BcaC08g45763' => 'bca', 'BcaC09g49778' => 'bca', 'BcaC09g50656' => 'bca', 'BcaNung03065' => 'bca', 'BcaNung05688' => 'bca', 'BolC1t02405H' => 'bol', 'BolC1t02406H' => 'bol', 'BolC1t03243H' => 'bol', 'BolC1t03244H' => 'bol', 'BolC1t03470H' => 'bol', 'BolC2t07251H' => 'bol', 'BolC2t07252H' => 'bol', 'BolC2t07579H' => 'bol', 'BolC2t07861H' => 'bol', 'BolC2t07862H' => 'bol', 'BolC2t08652H' => 'bol', 'BolC2t10065H' => 'bol', 'BolC2t10459H' => 'bol', 'BolC2t11860H' => 'bol', 'BolC3t14897H' => 'bol', 'BolC3t14898H' => 'bol', 'BolC3t17402H' => 'bol', 'BolC3t18089H' => 'bol', 'BolC3t18090H' => 'bol', 'BolC3t19033H' => 'bol', 'BolC3t19034H' => 'bol', 'BolC3t19035H' => 'bol', 'BolC3t19036H' => 'bol', 'BolC4t21897H' => 'bol', 'BolC4t23605H' => 'bol', 'BolC5t29915H' => 'bol', 'BolC5t30618H' => 'bol', 'BolC5t30619H' => 'bol', 'BolC5t31726H' => 'bol', 'BolC5t31727H' => 'bol', 'BolC5t32186H' => 'bol', 'BolC5t32603H' => 'bol', 'BolC5t32604H' => 'bol', 'BolC6t35851H' => 'bol', 'BolC6t35910H' => 'bol', 'BolC6t36784H' => 'bol', 'BolC6t37227H' => 'bol', 'BolC6t38666H' => 'bol', 'BolC6t39975H' => 'bol', 'BolC7t41468H' => 'bol', 'BolC7t41469H' => 'bol', 'BolC7t42880H' => 'bol', 'BolC7t42881H' => 'bol', 'BolC8t49093H' => 'bol', 'BolC9t55675H' => 'bol', 'BolC9t56617H' => 'bol', 'BolC9t56619H' => 'bol', 'BolC9t57080H' => 'bol', 'BolC9t57594H' => 'bol', 'BolC9t57745H' => 'bol', 'BolC9t59419H' => 'bol', 'BolC9t59420H' => 'bol', 'BraA01t01846Z' => 'bra', 'BraA01t02157Z' => 'bra', 'BraA02t07710Z' => 'bra', 'BraA02t07713Z' => 'bra', 'BraA02t07714Z' => 'bra', 'BraA02t07765Z' => 'bra', 'BraA02t08162Z' => 'bra', 'BraA02t08380Z' => 'bra', 'BraA02t08671Z' => 'bra', 'BraA02t08672Z' => 'bra', 'BraA03t11415Z' => 'bra', 'BraA03t13037Z' => 'bra', 'BraA03t13038Z' => 'bra', 'BraA03t13079Z' => 'bra', 'BraA03t13383Z' => 'bra', 'BraA05t19209Z' => 'bra', 'BraA05t20256Z' => 'bra', 'BraA05t20257Z' => 'bra', 'BraA05t20713Z' => 'bra', 'BraA05t20714Z' => 'bra', 'BraA05t20715Z' => 'bra', 'BraA05t20822Z' => 'bra', 'BraA05t21191Z' => 'bra', 'BraA05t21432Z' => 'bra', 'BraA06t24592Z' => 'bra', 'BraA06t25593Z' => 'bra', 'BraA06t25594Z' => 'bra', 'BraA06t25595Z' => 'bra', 'BraA07t28518Z' => 'bra', 'BraA08t32912Z' => 'bra', 'BraA08t32913Z' => 'bra', 'BraA09t37769Z' => 'bra', 'BraA09t38468Z' => 'bra', 'BraA09t39171Z' => 'bra', 'BraA10t42948Z' => 'bra', 'BraSC41t46221Z' => 'bra', 'C01p14870' => 'bna', 'C01p17430' => 'bna', 'C01p24570' => 'bna', 'C01p30150' => 'bna', 'C01p33030' => 'bna', 'C01p33040' => 'bna', 'C01p33050' => 'bna', 'C01p35070' => 'bna', 'C01p39770' => 'bna', 'C01p39780' => 'bna', 'C01p48530' => 'bna', 'C01p50410' => 'bna', 'C02p17470' => 'bna', 'C02p23920' => 'bna', 'C02p25810' => 'bna', 'C02p29930' => 'bna', 'C02p37580' => 'bna', 'C02p39910' => 'bna', 'C02p41800' => 'bna', 'C02p42390' => 'bna', 'C02p49780' => 'bna', 'C02p49790' => 'bna', 'C02p57920' => 'bna', 'C03p03110' => 'bna', 'C03p03120' => 'bna', 'C03p25070' => 'bna', 'C03p36960' => 'bna', 'C03p37020' => 'bna', 'C03p48210' => 'bna', 'C03p64080' => 'bna', 'C03p68110' => 'bna', 'C03p68120' => 'bna', 'C03p68130' => 'bna', 'C03p68140' => 'bna', 'C03p68150' => 'bna', 'C03p68510' => 'bna', 'C03p70020' => 'bna', 'C04p02540' => 'bna', 'C04p12430' => 'bna', 'C04p20750' => 'bna', 'C04p22380' => 'bna', 'C04p22390' => 'bna', 'C04p48700' => 'bna', 'C04p60190' => 'bna', 'C05p11680' => 'bna', 'C05p15150' => 'bna', 'C05p15160' => 'bna', 'C05p17420' => 'bna', 'C05p19180' => 'bna', 'C05p19190' => 'bna', 'C05p22020' => 'bna', 'C05p29930' => 'bna', 'C05p34540' => 'bna', 'C05p34550' => 'bna', 'C05p38640' => 'bna', 'C05p58100' => 'bna', 'C06p08290' => 'bna', 'C06p12830' => 'bna', 'C06p15920' => 'bna', 'C06p20440' => 'bna', 'C06p20450' => 'bna', 'C06p20460' => 'bna', 'C06p24190' => 'bna', 'C06p24210' => 'bna', 'C06p26050' => 'bna', 'C06p35450' => 'bna', 'C07p01710' => 'bna', 'C07p10190' => 'bna', 'C07p10200' => 'bna', 'C07p20730' => 'bna', 'C07p23590' => 'bna', 'C07p30310' => 'bna', 'C07p30320' => 'bna', 'C07p55740' => 'bna', 'C08p11380' => 'bna', 'C09p07350' => 'bna', 'C09p20890' => 'bna', 'C09p23470' => 'bna', 'C09p37840' => 'bna', 'C09p37850' => 'bna', 'C09p55130' => 'bna', 'C09p65960' => 'bna', 'C09p65970' => 'bna', 'C09p74690' => 'bna', 'CARHR032540' => 'chi', 'CARHR033910' => 'chi', 'CARHR034730' => 'chi', 'CARHR037550' => 'chi', 'CARHR057390' => 'chi', 'CARHR104030' => 'chi', 'CARHR104690' => 'chi', 'CARHR107370' => 'chi', 'CARHR116100' => 'chi', 'CARHR116190' => 'chi', 'CARHR117470' => 'chi', 'CARHR117480' => 'chi', 'CARHR118760' => 'chi', 'CARHR150320' => 'chi', 'CARHR150330' => 'chi', 'CARHR150510' => 'chi', 'CARHR152970' => 'chi', 'CARHR153270' => 'chi', 'CARHR159290' => 'chi', 'CARHR159300' => 'chi', 'CARHR177560' => 'chi', 'CARHR183570' => 'chi', 'CARHR185190' => 'chi', 'CARHR187300' => 'chi', 'CARHR215510' => 'chi', 'CARHR217190' => 'chi', 'CARHR254680' => 'chi', 'CARHR258020' => 'chi', 'CARHR260230' => 'chi', 'CARHR273180' => 'chi', 'CARHR284370' => 'chi', 'CARHR286710' => 'chi', 'CARHR289190' => 'chi', 'Carub.0001s3503' => 'cru', 'Carub.0003s2796' => 'cru', 'Carub.0003s3058' => 'cru', 'Carub.0004s0683' => 'cru', 'Carub.0004s0691' => 'cru', 'Carub.0004s0714' => 'cru', 'Carub.0004s3021' => 'cru', 'Carub.0005s0341' => 'cru', 'Carub.0005s0342' => 'cru', 'Carub.0005s0915' => 'cru', 'Carub.0006s2619' => 'cru', 'Carub.0006s2635' => 'cru', 'Carub.0006s2659' => 'cru', 'Carub.0006s2660' => 'cru', 'Carub.0006s2680' => 'cru', 'Carub.0006s2832' => 'cru', 'Carub.0007s3063' => 'cru', 'Carub.0007s3065' => 'cru', 'Carub.0007s3691' => 'cru', 'Carub.0008s0635' => 'cru', 'Carub.0008s0705' => 'cru', 'Carub.0008s0707' => 'cru', 'Carub.0013s0001' => 'cru', 'Carub.0025s0007' => 'cru', 'Carub.0027s0004' => 'cru', 'Carub.0261s0001' => 'cru', 'Sp1g32400' => 'spa', 'Sp1g37620' => 'spa', 'Sp3g23850' => 'spa', 'Sp3g26120' => 'spa', 'Sp3g26210' => 'spa', 'Sp4g06320' => 'spa', 'Sp4g06330' => 'spa', 'Sp4g08350' => 'spa', 'Sp4g09070' => 'spa', 'Sp4g09180' => 'spa', 'Sp4g09630' => 'spa', 'Sp5g20050' => 'spa', 'Sp6g08240' => 'spa', 'Sp6g11640' => 'spa', 'Sp7g09910' => 'spa', 'Sp7g11040' => 'spa', 'SpUn0003_0010' => 'spa', 'SpUn0799_0010' => 'spa', 'SpUn1586_0010' => 'spa', 'THA.LOC104822205' => 'tha', 'Thhalv10000502m.g' => 'esa', 'Thhalv10001219m.g' => 'esa', 'Thhalv10002266m.g' => 'esa', 'Thhalv10002270m.g' => 'esa', 'Thhalv10002320m.g' => 'esa', 'Thhalv10002824m.g' => 'esa', 'Thhalv10002866m.g' => 'esa', 'Thhalv10002876m.g' => 'esa', 'Thhalv10003035m.g' => 'esa', 'Thhalv10003101m.g' => 'esa', 'Thhalv10003114m.g' => 'esa', 'Thhalv10003373m.g' => 'esa', 'Thhalv10005449m.g' => 'esa', 'Thhalv10005571m.g' => 'esa', 'Thhalv10009813m.g' => 'esa', 'Thhalv10011096m.g' => 'esa', 'Thhalv10015545m.g' => 'esa', 'Thhalv10015594m.g' => 'esa', 'Thhalv10015902m.g' => 'esa', 'Thhalv10015990m.g' => 'esa', 'Thhalv10017747m.g' => 'esa', 'Thhalv10019544m.g' => 'esa', 'Thhalv10019746m.g' => 'esa', 'Thhalv10019761m.g' => 'esa', 'Thhalv10019812m.g' => 'esa', 'Thhalv10021955m.g' => 'esa', 'Thhalv10021997m.g' => 'esa', 'Thhalv10022509m.g' => 'esa', 'Thhalv10023178m.g' => 'esa', 'Thhalv10023182m.g' => 'esa', 'Thhalv10023880m.g' => 'esa', 'Thhalv10023966m.g' => 'esa', 'Thhalv10023984m.g' => 'esa', 'Thhalv10027106m.g' => 'esa', 'Thhalv10027292m.g' => 'esa', 'Thhalv10028061m.g' => 'esa', 'Thhalv10028072m.g' => 'esa', 'Thhalv10029224m.g' => 'esa', 'Thhalv10029261m.g' => 'esa', 'Thhalv10029448m.g' => 'esa', 'Thhalv10029511m.g' => 'esa', 'Thhalv10029525m.g' => 'esa' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001285', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001285' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001285', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '487', 'num_species' => '12' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001285' ) ), 'genes' => array( 'A01p19020' => 'bna', 'A01p27250' => 'bna', 'A01p27760' => 'bna', 'A02p21060' => 'bna', 'A02p21070' => 'bna', 'A02p24110' => 'bna', 'A02p26970' => 'bna', 'A02p26990' => 'bna', 'A02p27370' => 'bna', 'A02p31600' => 'bna', 'A02p33590' => 'bna', 'A02p36790' => 'bna', 'A02p36800' => 'bna', 'A02p36810' => 'bna', 'A03p39280' => 'bna', 'A03p66480' => 'bna', 'A05p01380' => 'bna', 'A05p16830' => 'bna', 'A05p21700' => 'bna', 'A05p23270' => 'bna', 'A06p14650' => 'bna', 'A06p14660' => 'bna', 'A06p22000' => 'bna', 'A06p36190' => 'bna', 'A07p09780' => 'bna', 'A08p03050' => 'bna', 'A09p14520' => 'bna', 'A09p21670' => 'bna', 'A09p24270' => 'bna', 'A09p31280' => 'bna', 'A09p31290' => 'bna', 'A09p31300' => 'bna', 'A10p07020' => 'bna', 'A10p10700' => 'bna', 'A10p12120' => 'bna', 'A10p12130' => 'bna', 'A10p12140' => 'bna', 'Aa31csc1523G10' => 'aar', 'Aa31LG10G6700' => 'aar', 'Aa31LG11G8450' => 'aar', 'Aa31LG11G8460' => 'aar', 'Aa31LG11G8470' => 'aar', 'Aa31LG1G3610' => 'aar', 'Aa31LG1G6910' => 'aar', 'Aa31LG1G6920' => 'aar', 'Aa31LG2G16260' => 'aar', 'Aa31LG3G1850' => 'aar', 'Aa31LG5G20540' => 'aar', 'Aa31LG5G23320' => 'aar', 'Aa31LG6G12780' => 'aar', 'Aa31LG6G5080' => 'aar', 'Aa31LG6G7610' => 'aar', 'Aa31LG8G11960' => 'aar', 'Aa31LG8G11990' => 'aar', 'Aa31LG8G12130' => 'aar', 'Aa31sc112G40' => 'aar', 'Aa31sc112G50' => 'aar', 'Aa31sc119G70' => 'aar', 'Aa31sc119G80' => 'aar', 'Aa31sc20G160' => 'aar', 'Aa31sc251G20' => 'aar', 'Aa31sc251G30' => 'aar', 'Aa31sc478G30' => 'aar', 'Aa31sc478G40' => 'aar', 'Aa31sc49G40' => 'aar', 'Aa31sc86G90' => 'aar', 'AL1G47430' => 'aly', 'AL1G51180' => 'aly', 'AL1G60090' => 'aly', 'AL1G65960' => 'aly', 'AL3G30210' => 'aly', 'AL3G40680' => 'aly', 'AL3G42580' => 'aly', 'AL3G44690' => 'aly', 'AL3G44710' => 'aly', 'AL3G45080' => 'aly', 'AL3G45110' => 'aly', 'AL3G45900' => 'aly', 'AL4G10770' => 'aly', 'AL4G17640' => 'aly', 'AL4G18390' => 'aly', 'AL4G20190' => 'aly', 'AL5G16910' => 'aly', 'AL5G16920' => 'aly', 'AL6G39290' => 'aly', 'AL6G40760' => 'aly', 'AL6G41380' => 'aly', 'AL6G42160' => 'aly', 'AL6G43460' => 'aly', 'AL7G43700' => 'aly', 'AL7G43910' => 'aly', 'AL7G45060' => 'aly', 'AL8G19130' => 'aly', 'AL8G21960' => 'aly', 'AL8G24550' => 'aly', 'AT1G37020' => 'ath', 'AT1G42525' => 'ath', 'AT2G10260' => 'ath', 'AT3G30305' => 'ath', 'AT3G31910' => 'ath', 'AT4G08430' => 'ath', 'AT5G28235' => 'ath', 'AT5G28810' => 'ath', 'AT5G45570' => 'ath', 'BcaB01g00219' => 'bca', 'BcaB01g01002' => 'bca', 'BcaB01g01138' => 'bca', 'BcaB01g02952' => 'bca', 'BcaB01g02953' => 'bca', 'BcaB01g02964' => 'bca', 'BcaB02g07816' => 'bca', 'BcaB02g11091' => 'bca', 'BcaB02g11283' => 'bca', 'BcaB02g11542' => 'bca', 'BcaB02g11543' => 'bca', 'BcaB03g15494' => 'bca', 'BcaB03g15495' => 'bca', 'BcaB03g15497' => 'bca', 'BcaB03g15498' => 'bca', 'BcaB03g15573' => 'bca', 'BcaB03g15580' => 'bca', 'BcaB03g16174' => 'bca', 'BcaB03g16262' => 'bca', 'BcaB03g16401' => 'bca', 'BcaB03g16504' => 'bca', 'BcaB04g17409' => 'bca', 'BcaB04g17599' => 'bca', 'BcaB04g17928' => 'bca', 'BcaB05g23429' => 'bca', 'BcaB05g23430' => 'bca', 'BcaB05g23483' => 'bca', 'BcaB06g25750' => 'bca', 'BcaB06g26565' => 'bca', 'BcaB06g26759' => 'bca', 'BcaB06g26823' => 'bca', 'BcaB06g28698' => 'bca', 'BcaB07g32960' => 'bca', 'BcaB07g32961' => 'bca', 'BcaB07g32962' => 'bca', 'BcaB07g33409' => 'bca', 'BcaB07g33410' => 'bca', 'BcaB08g35036' => 'bca', 'BcaB08g35296' => 'bca', 'BcaB08g35301' => 'bca', 'BcaC01g00776' => 'bca', 'BcaC01g02097' => 'bca', 'BcaC01g02155' => 'bca', 'BcaC01g02156' => 'bca', 'BcaC01g02157' => 'bca', 'BcaC02g10464' => 'bca', 'BcaC02g10993' => 'bca', 'BcaC02g10994' => 'bca', 'BcaC02g10995' => 'bca', 'BcaC02g11078' => 'bca', 'BcaC02g12762' => 'bca', 'BcaC03g14913' => 'bca', 'BcaC03g15031' => 'bca', 'BcaC03g15380' => 'bca', 'BcaC03g16214' => 'bca', 'BcaC03g16251' => 'bca', 'BcaC03g16362' => 'bca', 'BcaC03g16409' => 'bca', 'BcaC03g17060' => 'bca', 'BcaC03g17494' => 'bca', 'BcaC03g17776' => 'bca', 'BcaC04g19281' => 'bca', 'BcaC04g20925' => 'bca', 'BcaC05g25851' => 'bca', 'BcaC05g25966' => 'bca', 'BcaC05g27108' => 'bca', 'BcaC05g27109' => 'bca', 'BcaC05g27489' => 'bca', 'BcaC05g27865' => 'bca', 'BcaC05g28112' => 'bca', 'BcaC05g29508' => 'bca', 'BcaC05g30530' => 'bca', 'BcaC06g30937' => 'bca', 'BcaC06g34326' => 'bca', 'BcaC06g35842' => 'bca', 'BcaC06g35872' => 'bca', 'BcaC06g36181' => 'bca', 'BcaC07g38661' => 'bca', 'BcaC07g41709' => 'bca', 'BcaC07g41747' => 'bca', 'BcaC08g43217' => 'bca', 'BcaC08g43241' => 'bca', 'BcaC08g43423' => 'bca', 'BcaC08g44187' => 'bca', 'BcaC08g44579' => 'bca', 'BcaC08g45763' => 'bca', 'BcaC09g49778' => 'bca', 'BcaC09g50656' => 'bca', 'BcaNung03065' => 'bca', 'BcaNung05688' => 'bca', 'BolC1t02405H' => 'bol', 'BolC1t02406H' => 'bol', 'BolC1t03243H' => 'bol', 'BolC1t03244H' => 'bol', 'BolC1t03470H' => 'bol', 'BolC2t07251H' => 'bol', 'BolC2t07252H' => 'bol', 'BolC2t07579H' => 'bol', 'BolC2t07861H' => 'bol', 'BolC2t07862H' => 'bol', 'BolC2t08652H' => 'bol', 'BolC2t10065H' => 'bol', 'BolC2t10459H' => 'bol', 'BolC2t11860H' => 'bol', 'BolC3t14897H' => 'bol', 'BolC3t14898H' => 'bol', 'BolC3t17402H' => 'bol', 'BolC3t18089H' => 'bol', 'BolC3t18090H' => 'bol', 'BolC3t19033H' => 'bol', 'BolC3t19034H' => 'bol', 'BolC3t19035H' => 'bol', 'BolC3t19036H' => 'bol', 'BolC4t21897H' => 'bol', 'BolC4t23605H' => 'bol', 'BolC5t29915H' => 'bol', 'BolC5t30618H' => 'bol', 'BolC5t30619H' => 'bol', 'BolC5t31726H' => 'bol', 'BolC5t31727H' => 'bol', 'BolC5t32186H' => 'bol', 'BolC5t32603H' => 'bol', 'BolC5t32604H' => 'bol', 'BolC6t35851H' => 'bol', 'BolC6t35910H' => 'bol', 'BolC6t36784H' => 'bol', 'BolC6t37227H' => 'bol', 'BolC6t38666H' => 'bol', 'BolC6t39975H' => 'bol', 'BolC7t41468H' => 'bol', 'BolC7t41469H' => 'bol', 'BolC7t42880H' => 'bol', 'BolC7t42881H' => 'bol', 'BolC8t49093H' => 'bol', 'BolC9t55675H' => 'bol', 'BolC9t56617H' => 'bol', 'BolC9t56619H' => 'bol', 'BolC9t57080H' => 'bol', 'BolC9t57594H' => 'bol', 'BolC9t57745H' => 'bol', 'BolC9t59419H' => 'bol', 'BolC9t59420H' => 'bol', 'BraA01t01846Z' => 'bra', 'BraA01t02157Z' => 'bra', 'BraA02t07710Z' => 'bra', 'BraA02t07713Z' => 'bra', 'BraA02t07714Z' => 'bra', 'BraA02t07765Z' => 'bra', 'BraA02t08162Z' => 'bra', 'BraA02t08380Z' => 'bra', 'BraA02t08671Z' => 'bra', 'BraA02t08672Z' => 'bra', 'BraA03t11415Z' => 'bra', 'BraA03t13037Z' => 'bra', 'BraA03t13038Z' => 'bra', 'BraA03t13079Z' => 'bra', 'BraA03t13383Z' => 'bra', 'BraA05t19209Z' => 'bra', 'BraA05t20256Z' => 'bra', 'BraA05t20257Z' => 'bra', 'BraA05t20713Z' => 'bra', 'BraA05t20714Z' => 'bra', 'BraA05t20715Z' => 'bra', 'BraA05t20822Z' => 'bra', 'BraA05t21191Z' => 'bra', 'BraA05t21432Z' => 'bra', 'BraA06t24592Z' => 'bra', 'BraA06t25593Z' => 'bra', 'BraA06t25594Z' => 'bra', 'BraA06t25595Z' => 'bra', 'BraA07t28518Z' => 'bra', 'BraA08t32912Z' => 'bra', 'BraA08t32913Z' => 'bra', 'BraA09t37769Z' => 'bra', 'BraA09t38468Z' => 'bra', 'BraA09t39171Z' => 'bra', 'BraA10t42948Z' => 'bra', 'BraSC41t46221Z' => 'bra', 'C01p14870' => 'bna', 'C01p17430' => 'bna', 'C01p24570' => 'bna', 'C01p30150' => 'bna', 'C01p33030' => 'bna', 'C01p33040' => 'bna', 'C01p33050' => 'bna', 'C01p35070' => 'bna', 'C01p39770' => 'bna', 'C01p39780' => 'bna', 'C01p48530' => 'bna', 'C01p50410' => 'bna', 'C02p17470' => 'bna', 'C02p23920' => 'bna', 'C02p25810' => 'bna', 'C02p29930' => 'bna', 'C02p37580' => 'bna', 'C02p39910' => 'bna', 'C02p41800' => 'bna', 'C02p42390' => 'bna', 'C02p49780' => 'bna', 'C02p49790' => 'bna', 'C02p57920' => 'bna', 'C03p03110' => 'bna', 'C03p03120' => 'bna', 'C03p25070' => 'bna', 'C03p36960' => 'bna', 'C03p37020' => 'bna', 'C03p48210' => 'bna', 'C03p64080' => 'bna', 'C03p68110' => 'bna', 'C03p68120' => 'bna', 'C03p68130' => 'bna', 'C03p68140' => 'bna', 'C03p68150' => 'bna', 'C03p68510' => 'bna', 'C03p70020' => 'bna', 'C04p02540' => 'bna', 'C04p12430' => 'bna', 'C04p20750' => 'bna', 'C04p22380' => 'bna', 'C04p22390' => 'bna', 'C04p48700' => 'bna', 'C04p60190' => 'bna', 'C05p11680' => 'bna', 'C05p15150' => 'bna', 'C05p15160' => 'bna', 'C05p17420' => 'bna', 'C05p19180' => 'bna', 'C05p19190' => 'bna', 'C05p22020' => 'bna', 'C05p29930' => 'bna', 'C05p34540' => 'bna', 'C05p34550' => 'bna', 'C05p38640' => 'bna', 'C05p58100' => 'bna', 'C06p08290' => 'bna', 'C06p12830' => 'bna', 'C06p15920' => 'bna', 'C06p20440' => 'bna', 'C06p20450' => 'bna', 'C06p20460' => 'bna', 'C06p24190' => 'bna', 'C06p24210' => 'bna', 'C06p26050' => 'bna', 'C06p35450' => 'bna', 'C07p01710' => 'bna', 'C07p10190' => 'bna', 'C07p10200' => 'bna', 'C07p20730' => 'bna', 'C07p23590' => 'bna', 'C07p30310' => 'bna', 'C07p30320' => 'bna', 'C07p55740' => 'bna', 'C08p11380' => 'bna', 'C09p07350' => 'bna', 'C09p20890' => 'bna', 'C09p23470' => 'bna', 'C09p37840' => 'bna', 'C09p37850' => 'bna', 'C09p55130' => 'bna', 'C09p65960' => 'bna', 'C09p65970' => 'bna', 'C09p74690' => 'bna', 'CARHR032540' => 'chi', 'CARHR033910' => 'chi', 'CARHR034730' => 'chi', 'CARHR037550' => 'chi', 'CARHR057390' => 'chi', 'CARHR104030' => 'chi', 'CARHR104690' => 'chi', 'CARHR107370' => 'chi', 'CARHR116100' => 'chi', 'CARHR116190' => 'chi', 'CARHR117470' => 'chi', 'CARHR117480' => 'chi', 'CARHR118760' => 'chi', 'CARHR150320' => 'chi', 'CARHR150330' => 'chi', 'CARHR150510' => 'chi', 'CARHR152970' => 'chi', 'CARHR153270' => 'chi', 'CARHR159290' => 'chi', 'CARHR159300' => 'chi', 'CARHR177560' => 'chi', 'CARHR183570' => 'chi', 'CARHR185190' => 'chi', 'CARHR187300' => 'chi', 'CARHR215510' => 'chi', 'CARHR217190' => 'chi', 'CARHR254680' => 'chi', 'CARHR258020' => 'chi', 'CARHR260230' => 'chi', 'CARHR273180' => 'chi', 'CARHR284370' => 'chi', 'CARHR286710' => 'chi', 'CARHR289190' => 'chi', 'Carub.0001s3503' => 'cru', 'Carub.0003s2796' => 'cru', 'Carub.0003s3058' => 'cru', 'Carub.0004s0683' => 'cru', 'Carub.0004s0691' => 'cru', 'Carub.0004s0714' => 'cru', 'Carub.0004s3021' => 'cru', 'Carub.0005s0341' => 'cru', 'Carub.0005s0342' => 'cru', 'Carub.0005s0915' => 'cru', 'Carub.0006s2619' => 'cru', 'Carub.0006s2635' => 'cru', 'Carub.0006s2659' => 'cru', 'Carub.0006s2660' => 'cru', 'Carub.0006s2680' => 'cru', 'Carub.0006s2832' => 'cru', 'Carub.0007s3063' => 'cru', 'Carub.0007s3065' => 'cru', 'Carub.0007s3691' => 'cru', 'Carub.0008s0635' => 'cru', 'Carub.0008s0705' => 'cru', 'Carub.0008s0707' => 'cru', 'Carub.0013s0001' => 'cru', 'Carub.0025s0007' => 'cru', 'Carub.0027s0004' => 'cru', 'Carub.0261s0001' => 'cru', 'Sp1g32400' => 'spa', 'Sp1g37620' => 'spa', 'Sp3g23850' => 'spa', 'Sp3g26120' => 'spa', 'Sp3g26210' => 'spa', 'Sp4g06320' => 'spa', 'Sp4g06330' => 'spa', 'Sp4g08350' => 'spa', 'Sp4g09070' => 'spa', 'Sp4g09180' => 'spa', 'Sp4g09630' => 'spa', 'Sp5g20050' => 'spa', 'Sp6g08240' => 'spa', 'Sp6g11640' => 'spa', 'Sp7g09910' => 'spa', 'Sp7g11040' => 'spa', 'SpUn0003_0010' => 'spa', 'SpUn0799_0010' => 'spa', 'SpUn1586_0010' => 'spa', 'THA.LOC104822205' => 'tha', 'Thhalv10000502m.g' => 'esa', 'Thhalv10001219m.g' => 'esa', 'Thhalv10002266m.g' => 'esa', 'Thhalv10002270m.g' => 'esa', 'Thhalv10002320m.g' => 'esa', 'Thhalv10002824m.g' => 'esa', 'Thhalv10002866m.g' => 'esa', 'Thhalv10002876m.g' => 'esa', 'Thhalv10003035m.g' => 'esa', 'Thhalv10003101m.g' => 'esa', 'Thhalv10003114m.g' => 'esa', 'Thhalv10003373m.g' => 'esa', 'Thhalv10005449m.g' => 'esa', 'Thhalv10005571m.g' => 'esa', 'Thhalv10009813m.g' => 'esa', 'Thhalv10011096m.g' => 'esa', 'Thhalv10015545m.g' => 'esa', 'Thhalv10015594m.g' => 'esa', 'Thhalv10015902m.g' => 'esa', 'Thhalv10015990m.g' => 'esa', 'Thhalv10017747m.g' => 'esa', 'Thhalv10019544m.g' => 'esa', 'Thhalv10019746m.g' => 'esa', 'Thhalv10019761m.g' => 'esa', 'Thhalv10019812m.g' => 'esa', 'Thhalv10021955m.g' => 'esa', 'Thhalv10021997m.g' => 'esa', 'Thhalv10022509m.g' => 'esa', 'Thhalv10023178m.g' => 'esa', 'Thhalv10023182m.g' => 'esa', 'Thhalv10023880m.g' => 'esa', 'Thhalv10023966m.g' => 'esa', 'Thhalv10023984m.g' => 'esa', 'Thhalv10027106m.g' => 'esa', 'Thhalv10027292m.g' => 'esa', 'Thhalv10028061m.g' => 'esa', 'Thhalv10028072m.g' => 'esa', 'Thhalv10029224m.g' => 'esa', 'Thhalv10029261m.g' => 'esa', 'Thhalv10029448m.g' => 'esa', 'Thhalv10029511m.g' => 'esa', 'Thhalv10029525m.g' => 'esa' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001285' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001285' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001285' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001285' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001285', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '487', 'num_species' => '12' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p19020' => 'bna', 'A01p27250' => 'bna', 'A01p27760' => 'bna', 'A02p21060' => 'bna', 'A02p21070' => 'bna', 'A02p24110' => 'bna', 'A02p26970' => 'bna', 'A02p26990' => 'bna', 'A02p27370' => 'bna', 'A02p31600' => 'bna', 'A02p33590' => 'bna', 'A02p36790' => 'bna', 'A02p36800' => 'bna', 'A02p36810' => 'bna', 'A03p39280' => 'bna', 'A03p66480' => 'bna', 'A05p01380' => 'bna', 'A05p16830' => 'bna', 'A05p21700' => 'bna', 'A05p23270' => 'bna', 'A06p14650' => 'bna', 'A06p14660' => 'bna', 'A06p22000' => 'bna', 'A06p36190' => 'bna', 'A07p09780' => 'bna', 'A08p03050' => 'bna', 'A09p14520' => 'bna', 'A09p21670' => 'bna', 'A09p24270' => 'bna', 'A09p31280' => 'bna', 'A09p31290' => 'bna', 'A09p31300' => 'bna', 'A10p07020' => 'bna', 'A10p10700' => 'bna', 'A10p12120' => 'bna', 'A10p12130' => 'bna', 'A10p12140' => 'bna', 'Aa31csc1523G10' => 'aar', 'Aa31LG10G6700' => 'aar', 'Aa31LG11G8450' => 'aar', 'Aa31LG11G8460' => 'aar', 'Aa31LG11G8470' => 'aar', 'Aa31LG1G3610' => 'aar', 'Aa31LG1G6910' => 'aar', 'Aa31LG1G6920' => 'aar', 'Aa31LG2G16260' => 'aar', 'Aa31LG3G1850' => 'aar', 'Aa31LG5G20540' => 'aar', 'Aa31LG5G23320' => 'aar', 'Aa31LG6G12780' => 'aar', 'Aa31LG6G5080' => 'aar', 'Aa31LG6G7610' => 'aar', 'Aa31LG8G11960' => 'aar', 'Aa31LG8G11990' => 'aar', 'Aa31LG8G12130' => 'aar', 'Aa31sc112G40' => 'aar', 'Aa31sc112G50' => 'aar', 'Aa31sc119G70' => 'aar', 'Aa31sc119G80' => 'aar', 'Aa31sc20G160' => 'aar', 'Aa31sc251G20' => 'aar', 'Aa31sc251G30' => 'aar', 'Aa31sc478G30' => 'aar', 'Aa31sc478G40' => 'aar', 'Aa31sc49G40' => 'aar', 'Aa31sc86G90' => 'aar', 'AL1G47430' => 'aly', 'AL1G51180' => 'aly', 'AL1G60090' => 'aly', 'AL1G65960' => 'aly', 'AL3G30210' => 'aly', 'AL3G40680' => 'aly', 'AL3G42580' => 'aly', 'AL3G44690' => 'aly', 'AL3G44710' => 'aly', 'AL3G45080' => 'aly', 'AL3G45110' => 'aly', 'AL3G45900' => 'aly', 'AL4G10770' => 'aly', 'AL4G17640' => 'aly', 'AL4G18390' => 'aly', 'AL4G20190' => 'aly', 'AL5G16910' => 'aly', 'AL5G16920' => 'aly', 'AL6G39290' => 'aly', 'AL6G40760' => 'aly', 'AL6G41380' => 'aly', 'AL6G42160' => 'aly', 'AL6G43460' => 'aly', 'AL7G43700' => 'aly', 'AL7G43910' => 'aly', 'AL7G45060' => 'aly', 'AL8G19130' => 'aly', 'AL8G21960' => 'aly', 'AL8G24550' => 'aly', 'AT1G37020' => 'ath', 'AT1G42525' => 'ath', 'AT2G10260' => 'ath', 'AT3G30305' => 'ath', 'AT3G31910' => 'ath', 'AT4G08430' => 'ath', 'AT5G28235' => 'ath', 'AT5G28810' => 'ath', 'AT5G45570' => 'ath', 'BcaB01g00219' => 'bca', 'BcaB01g01002' => 'bca', 'BcaB01g01138' => 'bca', 'BcaB01g02952' => 'bca', 'BcaB01g02953' => 'bca', 'BcaB01g02964' => 'bca', 'BcaB02g07816' => 'bca', 'BcaB02g11091' => 'bca', 'BcaB02g11283' => 'bca', 'BcaB02g11542' => 'bca', 'BcaB02g11543' => 'bca', 'BcaB03g15494' => 'bca', 'BcaB03g15495' => 'bca', 'BcaB03g15497' => 'bca', 'BcaB03g15498' => 'bca', 'BcaB03g15573' => 'bca', 'BcaB03g15580' => 'bca', 'BcaB03g16174' => 'bca', 'BcaB03g16262' => 'bca', 'BcaB03g16401' => 'bca', 'BcaB03g16504' => 'bca', 'BcaB04g17409' => 'bca', 'BcaB04g17599' => 'bca', 'BcaB04g17928' => 'bca', 'BcaB05g23429' => 'bca', 'BcaB05g23430' => 'bca', 'BcaB05g23483' => 'bca', 'BcaB06g25750' => 'bca', 'BcaB06g26565' => 'bca', 'BcaB06g26759' => 'bca', 'BcaB06g26823' => 'bca', 'BcaB06g28698' => 'bca', 'BcaB07g32960' => 'bca', 'BcaB07g32961' => 'bca', 'BcaB07g32962' => 'bca', 'BcaB07g33409' => 'bca', 'BcaB07g33410' => 'bca', 'BcaB08g35036' => 'bca', 'BcaB08g35296' => 'bca', 'BcaB08g35301' => 'bca', 'BcaC01g00776' => 'bca', 'BcaC01g02097' => 'bca', 'BcaC01g02155' => 'bca', 'BcaC01g02156' => 'bca', 'BcaC01g02157' => 'bca', 'BcaC02g10464' => 'bca', 'BcaC02g10993' => 'bca', 'BcaC02g10994' => 'bca', 'BcaC02g10995' => 'bca', 'BcaC02g11078' => 'bca', 'BcaC02g12762' => 'bca', 'BcaC03g14913' => 'bca', 'BcaC03g15031' => 'bca', 'BcaC03g15380' => 'bca', 'BcaC03g16214' => 'bca', 'BcaC03g16251' => 'bca', 'BcaC03g16362' => 'bca', 'BcaC03g16409' => 'bca', 'BcaC03g17060' => 'bca', 'BcaC03g17494' => 'bca', 'BcaC03g17776' => 'bca', 'BcaC04g19281' => 'bca', 'BcaC04g20925' => 'bca', 'BcaC05g25851' => 'bca', 'BcaC05g25966' => 'bca', 'BcaC05g27108' => 'bca', 'BcaC05g27109' => 'bca', 'BcaC05g27489' => 'bca', 'BcaC05g27865' => 'bca', 'BcaC05g28112' => 'bca', 'BcaC05g29508' => 'bca', 'BcaC05g30530' => 'bca', 'BcaC06g30937' => 'bca', 'BcaC06g34326' => 'bca', 'BcaC06g35842' => 'bca', 'BcaC06g35872' => 'bca', 'BcaC06g36181' => 'bca', 'BcaC07g38661' => 'bca', 'BcaC07g41709' => 'bca', 'BcaC07g41747' => 'bca', 'BcaC08g43217' => 'bca', 'BcaC08g43241' => 'bca', 'BcaC08g43423' => 'bca', 'BcaC08g44187' => 'bca', 'BcaC08g44579' => 'bca', 'BcaC08g45763' => 'bca', 'BcaC09g49778' => 'bca', 'BcaC09g50656' => 'bca', 'BcaNung03065' => 'bca', 'BcaNung05688' => 'bca', 'BolC1t02405H' => 'bol', 'BolC1t02406H' => 'bol', 'BolC1t03243H' => 'bol', 'BolC1t03244H' => 'bol', 'BolC1t03470H' => 'bol', 'BolC2t07251H' => 'bol', 'BolC2t07252H' => 'bol', 'BolC2t07579H' => 'bol', 'BolC2t07861H' => 'bol', 'BolC2t07862H' => 'bol', 'BolC2t08652H' => 'bol', 'BolC2t10065H' => 'bol', 'BolC2t10459H' => 'bol', 'BolC2t11860H' => 'bol', 'BolC3t14897H' => 'bol', 'BolC3t14898H' => 'bol', 'BolC3t17402H' => 'bol', 'BolC3t18089H' => 'bol', 'BolC3t18090H' => 'bol', 'BolC3t19033H' => 'bol', 'BolC3t19034H' => 'bol', 'BolC3t19035H' => 'bol', 'BolC3t19036H' => 'bol', 'BolC4t21897H' => 'bol', 'BolC4t23605H' => 'bol', 'BolC5t29915H' => 'bol', 'BolC5t30618H' => 'bol', 'BolC5t30619H' => 'bol', 'BolC5t31726H' => 'bol', 'BolC5t31727H' => 'bol', 'BolC5t32186H' => 'bol', 'BolC5t32603H' => 'bol', 'BolC5t32604H' => 'bol', 'BolC6t35851H' => 'bol', 'BolC6t35910H' => 'bol', 'BolC6t36784H' => 'bol', 'BolC6t37227H' => 'bol', 'BolC6t38666H' => 'bol', 'BolC6t39975H' => 'bol', 'BolC7t41468H' => 'bol', 'BolC7t41469H' => 'bol', 'BolC7t42880H' => 'bol', 'BolC7t42881H' => 'bol', 'BolC8t49093H' => 'bol', 'BolC9t55675H' => 'bol', 'BolC9t56617H' => 'bol', 'BolC9t56619H' => 'bol', 'BolC9t57080H' => 'bol', 'BolC9t57594H' => 'bol', 'BolC9t57745H' => 'bol', 'BolC9t59419H' => 'bol', 'BolC9t59420H' => 'bol', 'BraA01t01846Z' => 'bra', 'BraA01t02157Z' => 'bra', 'BraA02t07710Z' => 'bra', 'BraA02t07713Z' => 'bra', 'BraA02t07714Z' => 'bra', 'BraA02t07765Z' => 'bra', 'BraA02t08162Z' => 'bra', 'BraA02t08380Z' => 'bra', 'BraA02t08671Z' => 'bra', 'BraA02t08672Z' => 'bra', 'BraA03t11415Z' => 'bra', 'BraA03t13037Z' => 'bra', 'BraA03t13038Z' => 'bra', 'BraA03t13079Z' => 'bra', 'BraA03t13383Z' => 'bra', 'BraA05t19209Z' => 'bra', 'BraA05t20256Z' => 'bra', 'BraA05t20257Z' => 'bra', 'BraA05t20713Z' => 'bra', 'BraA05t20714Z' => 'bra', 'BraA05t20715Z' => 'bra', 'BraA05t20822Z' => 'bra', 'BraA05t21191Z' => 'bra', 'BraA05t21432Z' => 'bra', 'BraA06t24592Z' => 'bra', 'BraA06t25593Z' => 'bra', 'BraA06t25594Z' => 'bra', 'BraA06t25595Z' => 'bra', 'BraA07t28518Z' => 'bra', 'BraA08t32912Z' => 'bra', 'BraA08t32913Z' => 'bra', 'BraA09t37769Z' => 'bra', 'BraA09t38468Z' => 'bra', 'BraA09t39171Z' => 'bra', 'BraA10t42948Z' => 'bra', 'BraSC41t46221Z' => 'bra', 'C01p14870' => 'bna', 'C01p17430' => 'bna', 'C01p24570' => 'bna', 'C01p30150' => 'bna', 'C01p33030' => 'bna', 'C01p33040' => 'bna', 'C01p33050' => 'bna', 'C01p35070' => 'bna', 'C01p39770' => 'bna', 'C01p39780' => 'bna', 'C01p48530' => 'bna', 'C01p50410' => 'bna', 'C02p17470' => 'bna', 'C02p23920' => 'bna', 'C02p25810' => 'bna', 'C02p29930' => 'bna', 'C02p37580' => 'bna', 'C02p39910' => 'bna', 'C02p41800' => 'bna', 'C02p42390' => 'bna', 'C02p49780' => 'bna', 'C02p49790' => 'bna', 'C02p57920' => 'bna', 'C03p03110' => 'bna', 'C03p03120' => 'bna', 'C03p25070' => 'bna', 'C03p36960' => 'bna', 'C03p37020' => 'bna', 'C03p48210' => 'bna', 'C03p64080' => 'bna', 'C03p68110' => 'bna', 'C03p68120' => 'bna', 'C03p68130' => 'bna', 'C03p68140' => 'bna', 'C03p68150' => 'bna', 'C03p68510' => 'bna', 'C03p70020' => 'bna', 'C04p02540' => 'bna', 'C04p12430' => 'bna', 'C04p20750' => 'bna', 'C04p22380' => 'bna', 'C04p22390' => 'bna', 'C04p48700' => 'bna', 'C04p60190' => 'bna', 'C05p11680' => 'bna', 'C05p15150' => 'bna', 'C05p15160' => 'bna', 'C05p17420' => 'bna', 'C05p19180' => 'bna', 'C05p19190' => 'bna', 'C05p22020' => 'bna', 'C05p29930' => 'bna', 'C05p34540' => 'bna', 'C05p34550' => 'bna', 'C05p38640' => 'bna', 'C05p58100' => 'bna', 'C06p08290' => 'bna', 'C06p12830' => 'bna', 'C06p15920' => 'bna', 'C06p20440' => 'bna', 'C06p20450' => 'bna', 'C06p20460' => 'bna', 'C06p24190' => 'bna', 'C06p24210' => 'bna', 'C06p26050' => 'bna', 'C06p35450' => 'bna', 'C07p01710' => 'bna', 'C07p10190' => 'bna', 'C07p10200' => 'bna', 'C07p20730' => 'bna', 'C07p23590' => 'bna', 'C07p30310' => 'bna', 'C07p30320' => 'bna', 'C07p55740' => 'bna', 'C08p11380' => 'bna', 'C09p07350' => 'bna', 'C09p20890' => 'bna', 'C09p23470' => 'bna', 'C09p37840' => 'bna', 'C09p37850' => 'bna', 'C09p55130' => 'bna', 'C09p65960' => 'bna', 'C09p65970' => 'bna', 'C09p74690' => 'bna', 'CARHR032540' => 'chi', 'CARHR033910' => 'chi', 'CARHR034730' => 'chi', 'CARHR037550' => 'chi', 'CARHR057390' => 'chi', 'CARHR104030' => 'chi', 'CARHR104690' => 'chi', 'CARHR107370' => 'chi', 'CARHR116100' => 'chi', 'CARHR116190' => 'chi', 'CARHR117470' => 'chi', 'CARHR117480' => 'chi', 'CARHR118760' => 'chi', 'CARHR150320' => 'chi', 'CARHR150330' => 'chi', 'CARHR150510' => 'chi', 'CARHR152970' => 'chi', 'CARHR153270' => 'chi', 'CARHR159290' => 'chi', 'CARHR159300' => 'chi', 'CARHR177560' => 'chi', 'CARHR183570' => 'chi', 'CARHR185190' => 'chi', 'CARHR187300' => 'chi', 'CARHR215510' => 'chi', 'CARHR217190' => 'chi', 'CARHR254680' => 'chi', 'CARHR258020' => 'chi', 'CARHR260230' => 'chi', 'CARHR273180' => 'chi', 'CARHR284370' => 'chi', 'CARHR286710' => 'chi', 'CARHR289190' => 'chi', 'Carub.0001s3503' => 'cru', 'Carub.0003s2796' => 'cru', 'Carub.0003s3058' => 'cru', 'Carub.0004s0683' => 'cru', 'Carub.0004s0691' => 'cru', 'Carub.0004s0714' => 'cru', 'Carub.0004s3021' => 'cru', 'Carub.0005s0341' => 'cru', 'Carub.0005s0342' => 'cru', 'Carub.0005s0915' => 'cru', 'Carub.0006s2619' => 'cru', 'Carub.0006s2635' => 'cru', 'Carub.0006s2659' => 'cru', 'Carub.0006s2660' => 'cru', 'Carub.0006s2680' => 'cru', 'Carub.0006s2832' => 'cru', 'Carub.0007s3063' => 'cru', 'Carub.0007s3065' => 'cru', 'Carub.0007s3691' => 'cru', 'Carub.0008s0635' => 'cru', 'Carub.0008s0705' => 'cru', 'Carub.0008s0707' => 'cru', 'Carub.0013s0001' => 'cru', 'Carub.0025s0007' => 'cru', 'Carub.0027s0004' => 'cru', 'Carub.0261s0001' => 'cru', 'Sp1g32400' => 'spa', 'Sp1g37620' => 'spa', 'Sp3g23850' => 'spa', 'Sp3g26120' => 'spa', 'Sp3g26210' => 'spa', 'Sp4g06320' => 'spa', 'Sp4g06330' => 'spa', 'Sp4g08350' => 'spa', 'Sp4g09070' => 'spa', 'Sp4g09180' => 'spa', 'Sp4g09630' => 'spa', 'Sp5g20050' => 'spa', 'Sp6g08240' => 'spa', 'Sp6g11640' => 'spa', 'Sp7g09910' => 'spa', 'Sp7g11040' => 'spa', 'SpUn0003_0010' => 'spa', 'SpUn0799_0010' => 'spa', 'SpUn1586_0010' => 'spa', 'THA.LOC104822205' => 'tha', 'Thhalv10000502m.g' => 'esa', 'Thhalv10001219m.g' => 'esa', 'Thhalv10002266m.g' => 'esa', 'Thhalv10002270m.g' => 'esa', 'Thhalv10002320m.g' => 'esa', 'Thhalv10002824m.g' => 'esa', 'Thhalv10002866m.g' => 'esa', 'Thhalv10002876m.g' => 'esa', 'Thhalv10003035m.g' => 'esa', 'Thhalv10003101m.g' => 'esa', 'Thhalv10003114m.g' => 'esa', 'Thhalv10003373m.g' => 'esa', 'Thhalv10005449m.g' => 'esa', 'Thhalv10005571m.g' => 'esa', 'Thhalv10009813m.g' => 'esa', 'Thhalv10011096m.g' => 'esa', 'Thhalv10015545m.g' => 'esa', 'Thhalv10015594m.g' => 'esa', 'Thhalv10015902m.g' => 'esa', 'Thhalv10015990m.g' => 'esa', 'Thhalv10017747m.g' => 'esa', 'Thhalv10019544m.g' => 'esa', 'Thhalv10019746m.g' => 'esa', 'Thhalv10019761m.g' => 'esa', 'Thhalv10019812m.g' => 'esa', 'Thhalv10021955m.g' => 'esa', 'Thhalv10021997m.g' => 'esa', 'Thhalv10022509m.g' => 'esa', 'Thhalv10023178m.g' => 'esa', 'Thhalv10023182m.g' => 'esa', 'Thhalv10023880m.g' => 'esa', 'Thhalv10023966m.g' => 'esa', 'Thhalv10023984m.g' => 'esa', 'Thhalv10027106m.g' => 'esa', 'Thhalv10027292m.g' => 'esa', 'Thhalv10028061m.g' => 'esa', 'Thhalv10028072m.g' => 'esa', 'Thhalv10029224m.g' => 'esa', 'Thhalv10029261m.g' => 'esa', 'Thhalv10029448m.g' => 'esa', 'Thhalv10029511m.g' => 'esa', 'Thhalv10029525m.g' => 'esa' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001285', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001285' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001285', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '487', 'num_species' => '12' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001285' ) ), 'genes' => array( 'A01p19020' => 'bna', 'A01p27250' => 'bna', 'A01p27760' => 'bna', 'A02p21060' => 'bna', 'A02p21070' => 'bna', 'A02p24110' => 'bna', 'A02p26970' => 'bna', 'A02p26990' => 'bna', 'A02p27370' => 'bna', 'A02p31600' => 'bna', 'A02p33590' => 'bna', 'A02p36790' => 'bna', 'A02p36800' => 'bna', 'A02p36810' => 'bna', 'A03p39280' => 'bna', 'A03p66480' => 'bna', 'A05p01380' => 'bna', 'A05p16830' => 'bna', 'A05p21700' => 'bna', 'A05p23270' => 'bna', 'A06p14650' => 'bna', 'A06p14660' => 'bna', 'A06p22000' => 'bna', 'A06p36190' => 'bna', 'A07p09780' => 'bna', 'A08p03050' => 'bna', 'A09p14520' => 'bna', 'A09p21670' => 'bna', 'A09p24270' => 'bna', 'A09p31280' => 'bna', 'A09p31290' => 'bna', 'A09p31300' => 'bna', 'A10p07020' => 'bna', 'A10p10700' => 'bna', 'A10p12120' => 'bna', 'A10p12130' => 'bna', 'A10p12140' => 'bna', 'Aa31csc1523G10' => 'aar', 'Aa31LG10G6700' => 'aar', 'Aa31LG11G8450' => 'aar', 'Aa31LG11G8460' => 'aar', 'Aa31LG11G8470' => 'aar', 'Aa31LG1G3610' => 'aar', 'Aa31LG1G6910' => 'aar', 'Aa31LG1G6920' => 'aar', 'Aa31LG2G16260' => 'aar', 'Aa31LG3G1850' => 'aar', 'Aa31LG5G20540' => 'aar', 'Aa31LG5G23320' => 'aar', 'Aa31LG6G12780' => 'aar', 'Aa31LG6G5080' => 'aar', 'Aa31LG6G7610' => 'aar', 'Aa31LG8G11960' => 'aar', 'Aa31LG8G11990' => 'aar', 'Aa31LG8G12130' => 'aar', 'Aa31sc112G40' => 'aar', 'Aa31sc112G50' => 'aar', 'Aa31sc119G70' => 'aar', 'Aa31sc119G80' => 'aar', 'Aa31sc20G160' => 'aar', 'Aa31sc251G20' => 'aar', 'Aa31sc251G30' => 'aar', 'Aa31sc478G30' => 'aar', 'Aa31sc478G40' => 'aar', 'Aa31sc49G40' => 'aar', 'Aa31sc86G90' => 'aar', 'AL1G47430' => 'aly', 'AL1G51180' => 'aly', 'AL1G60090' => 'aly', 'AL1G65960' => 'aly', 'AL3G30210' => 'aly', 'AL3G40680' => 'aly', 'AL3G42580' => 'aly', 'AL3G44690' => 'aly', 'AL3G44710' => 'aly', 'AL3G45080' => 'aly', 'AL3G45110' => 'aly', 'AL3G45900' => 'aly', 'AL4G10770' => 'aly', 'AL4G17640' => 'aly', 'AL4G18390' => 'aly', 'AL4G20190' => 'aly', 'AL5G16910' => 'aly', 'AL5G16920' => 'aly', 'AL6G39290' => 'aly', 'AL6G40760' => 'aly', 'AL6G41380' => 'aly', 'AL6G42160' => 'aly', 'AL6G43460' => 'aly', 'AL7G43700' => 'aly', 'AL7G43910' => 'aly', 'AL7G45060' => 'aly', 'AL8G19130' => 'aly', 'AL8G21960' => 'aly', 'AL8G24550' => 'aly', 'AT1G37020' => 'ath', 'AT1G42525' => 'ath', 'AT2G10260' => 'ath', 'AT3G30305' => 'ath', 'AT3G31910' => 'ath', 'AT4G08430' => 'ath', 'AT5G28235' => 'ath', 'AT5G28810' => 'ath', 'AT5G45570' => 'ath', 'BcaB01g00219' => 'bca', 'BcaB01g01002' => 'bca', 'BcaB01g01138' => 'bca', 'BcaB01g02952' => 'bca', 'BcaB01g02953' => 'bca', 'BcaB01g02964' => 'bca', 'BcaB02g07816' => 'bca', 'BcaB02g11091' => 'bca', 'BcaB02g11283' => 'bca', 'BcaB02g11542' => 'bca', 'BcaB02g11543' => 'bca', 'BcaB03g15494' => 'bca', 'BcaB03g15495' => 'bca', 'BcaB03g15497' => 'bca', 'BcaB03g15498' => 'bca', 'BcaB03g15573' => 'bca', 'BcaB03g15580' => 'bca', 'BcaB03g16174' => 'bca', 'BcaB03g16262' => 'bca', 'BcaB03g16401' => 'bca', 'BcaB03g16504' => 'bca', 'BcaB04g17409' => 'bca', 'BcaB04g17599' => 'bca', 'BcaB04g17928' => 'bca', 'BcaB05g23429' => 'bca', 'BcaB05g23430' => 'bca', 'BcaB05g23483' => 'bca', 'BcaB06g25750' => 'bca', 'BcaB06g26565' => 'bca', 'BcaB06g26759' => 'bca', 'BcaB06g26823' => 'bca', 'BcaB06g28698' => 'bca', 'BcaB07g32960' => 'bca', 'BcaB07g32961' => 'bca', 'BcaB07g32962' => 'bca', 'BcaB07g33409' => 'bca', 'BcaB07g33410' => 'bca', 'BcaB08g35036' => 'bca', 'BcaB08g35296' => 'bca', 'BcaB08g35301' => 'bca', 'BcaC01g00776' => 'bca', 'BcaC01g02097' => 'bca', 'BcaC01g02155' => 'bca', 'BcaC01g02156' => 'bca', 'BcaC01g02157' => 'bca', 'BcaC02g10464' => 'bca', 'BcaC02g10993' => 'bca', 'BcaC02g10994' => 'bca', 'BcaC02g10995' => 'bca', 'BcaC02g11078' => 'bca', 'BcaC02g12762' => 'bca', 'BcaC03g14913' => 'bca', 'BcaC03g15031' => 'bca', 'BcaC03g15380' => 'bca', 'BcaC03g16214' => 'bca', 'BcaC03g16251' => 'bca', 'BcaC03g16362' => 'bca', 'BcaC03g16409' => 'bca', 'BcaC03g17060' => 'bca', 'BcaC03g17494' => 'bca', 'BcaC03g17776' => 'bca', 'BcaC04g19281' => 'bca', 'BcaC04g20925' => 'bca', 'BcaC05g25851' => 'bca', 'BcaC05g25966' => 'bca', 'BcaC05g27108' => 'bca', 'BcaC05g27109' => 'bca', 'BcaC05g27489' => 'bca', 'BcaC05g27865' => 'bca', 'BcaC05g28112' => 'bca', 'BcaC05g29508' => 'bca', 'BcaC05g30530' => 'bca', 'BcaC06g30937' => 'bca', 'BcaC06g34326' => 'bca', 'BcaC06g35842' => 'bca', 'BcaC06g35872' => 'bca', 'BcaC06g36181' => 'bca', 'BcaC07g38661' => 'bca', 'BcaC07g41709' => 'bca', 'BcaC07g41747' => 'bca', 'BcaC08g43217' => 'bca', 'BcaC08g43241' => 'bca', 'BcaC08g43423' => 'bca', 'BcaC08g44187' => 'bca', 'BcaC08g44579' => 'bca', 'BcaC08g45763' => 'bca', 'BcaC09g49778' => 'bca', 'BcaC09g50656' => 'bca', 'BcaNung03065' => 'bca', 'BcaNung05688' => 'bca', 'BolC1t02405H' => 'bol', 'BolC1t02406H' => 'bol', 'BolC1t03243H' => 'bol', 'BolC1t03244H' => 'bol', 'BolC1t03470H' => 'bol', 'BolC2t07251H' => 'bol', 'BolC2t07252H' => 'bol', 'BolC2t07579H' => 'bol', 'BolC2t07861H' => 'bol', 'BolC2t07862H' => 'bol', 'BolC2t08652H' => 'bol', 'BolC2t10065H' => 'bol', 'BolC2t10459H' => 'bol', 'BolC2t11860H' => 'bol', 'BolC3t14897H' => 'bol', 'BolC3t14898H' => 'bol', 'BolC3t17402H' => 'bol', 'BolC3t18089H' => 'bol', 'BolC3t18090H' => 'bol', 'BolC3t19033H' => 'bol', 'BolC3t19034H' => 'bol', 'BolC3t19035H' => 'bol', 'BolC3t19036H' => 'bol', 'BolC4t21897H' => 'bol', 'BolC4t23605H' => 'bol', 'BolC5t29915H' => 'bol', 'BolC5t30618H' => 'bol', 'BolC5t30619H' => 'bol', 'BolC5t31726H' => 'bol', 'BolC5t31727H' => 'bol', 'BolC5t32186H' => 'bol', 'BolC5t32603H' => 'bol', 'BolC5t32604H' => 'bol', 'BolC6t35851H' => 'bol', 'BolC6t35910H' => 'bol', 'BolC6t36784H' => 'bol', 'BolC6t37227H' => 'bol', 'BolC6t38666H' => 'bol', 'BolC6t39975H' => 'bol', 'BolC7t41468H' => 'bol', 'BolC7t41469H' => 'bol', 'BolC7t42880H' => 'bol', 'BolC7t42881H' => 'bol', 'BolC8t49093H' => 'bol', 'BolC9t55675H' => 'bol', 'BolC9t56617H' => 'bol', 'BolC9t56619H' => 'bol', 'BolC9t57080H' => 'bol', 'BolC9t57594H' => 'bol', 'BolC9t57745H' => 'bol', 'BolC9t59419H' => 'bol', 'BolC9t59420H' => 'bol', 'BraA01t01846Z' => 'bra', 'BraA01t02157Z' => 'bra', 'BraA02t07710Z' => 'bra', 'BraA02t07713Z' => 'bra', 'BraA02t07714Z' => 'bra', 'BraA02t07765Z' => 'bra', 'BraA02t08162Z' => 'bra', 'BraA02t08380Z' => 'bra', 'BraA02t08671Z' => 'bra', 'BraA02t08672Z' => 'bra', 'BraA03t11415Z' => 'bra', 'BraA03t13037Z' => 'bra', 'BraA03t13038Z' => 'bra', 'BraA03t13079Z' => 'bra', 'BraA03t13383Z' => 'bra', 'BraA05t19209Z' => 'bra', 'BraA05t20256Z' => 'bra', 'BraA05t20257Z' => 'bra', 'BraA05t20713Z' => 'bra', 'BraA05t20714Z' => 'bra', 'BraA05t20715Z' => 'bra', 'BraA05t20822Z' => 'bra', 'BraA05t21191Z' => 'bra', 'BraA05t21432Z' => 'bra', 'BraA06t24592Z' => 'bra', 'BraA06t25593Z' => 'bra', 'BraA06t25594Z' => 'bra', 'BraA06t25595Z' => 'bra', 'BraA07t28518Z' => 'bra', 'BraA08t32912Z' => 'bra', 'BraA08t32913Z' => 'bra', 'BraA09t37769Z' => 'bra', 'BraA09t38468Z' => 'bra', 'BraA09t39171Z' => 'bra', 'BraA10t42948Z' => 'bra', 'BraSC41t46221Z' => 'bra', 'C01p14870' => 'bna', 'C01p17430' => 'bna', 'C01p24570' => 'bna', 'C01p30150' => 'bna', 'C01p33030' => 'bna', 'C01p33040' => 'bna', 'C01p33050' => 'bna', 'C01p35070' => 'bna', 'C01p39770' => 'bna', 'C01p39780' => 'bna', 'C01p48530' => 'bna', 'C01p50410' => 'bna', 'C02p17470' => 'bna', 'C02p23920' => 'bna', 'C02p25810' => 'bna', 'C02p29930' => 'bna', 'C02p37580' => 'bna', 'C02p39910' => 'bna', 'C02p41800' => 'bna', 'C02p42390' => 'bna', 'C02p49780' => 'bna', 'C02p49790' => 'bna', 'C02p57920' => 'bna', 'C03p03110' => 'bna', 'C03p03120' => 'bna', 'C03p25070' => 'bna', 'C03p36960' => 'bna', 'C03p37020' => 'bna', 'C03p48210' => 'bna', 'C03p64080' => 'bna', 'C03p68110' => 'bna', 'C03p68120' => 'bna', 'C03p68130' => 'bna', 'C03p68140' => 'bna', 'C03p68150' => 'bna', 'C03p68510' => 'bna', 'C03p70020' => 'bna', 'C04p02540' => 'bna', 'C04p12430' => 'bna', 'C04p20750' => 'bna', 'C04p22380' => 'bna', 'C04p22390' => 'bna', 'C04p48700' => 'bna', 'C04p60190' => 'bna', 'C05p11680' => 'bna', 'C05p15150' => 'bna', 'C05p15160' => 'bna', 'C05p17420' => 'bna', 'C05p19180' => 'bna', 'C05p19190' => 'bna', 'C05p22020' => 'bna', 'C05p29930' => 'bna', 'C05p34540' => 'bna', 'C05p34550' => 'bna', 'C05p38640' => 'bna', 'C05p58100' => 'bna', 'C06p08290' => 'bna', 'C06p12830' => 'bna', 'C06p15920' => 'bna', 'C06p20440' => 'bna', 'C06p20450' => 'bna', 'C06p20460' => 'bna', 'C06p24190' => 'bna', 'C06p24210' => 'bna', 'C06p26050' => 'bna', 'C06p35450' => 'bna', 'C07p01710' => 'bna', 'C07p10190' => 'bna', 'C07p10200' => 'bna', 'C07p20730' => 'bna', 'C07p23590' => 'bna', 'C07p30310' => 'bna', 'C07p30320' => 'bna', 'C07p55740' => 'bna', 'C08p11380' => 'bna', 'C09p07350' => 'bna', 'C09p20890' => 'bna', 'C09p23470' => 'bna', 'C09p37840' => 'bna', 'C09p37850' => 'bna', 'C09p55130' => 'bna', 'C09p65960' => 'bna', 'C09p65970' => 'bna', 'C09p74690' => 'bna', 'CARHR032540' => 'chi', 'CARHR033910' => 'chi', 'CARHR034730' => 'chi', 'CARHR037550' => 'chi', 'CARHR057390' => 'chi', 'CARHR104030' => 'chi', 'CARHR104690' => 'chi', 'CARHR107370' => 'chi', 'CARHR116100' => 'chi', 'CARHR116190' => 'chi', 'CARHR117470' => 'chi', 'CARHR117480' => 'chi', 'CARHR118760' => 'chi', 'CARHR150320' => 'chi', 'CARHR150330' => 'chi', 'CARHR150510' => 'chi', 'CARHR152970' => 'chi', 'CARHR153270' => 'chi', 'CARHR159290' => 'chi', 'CARHR159300' => 'chi', 'CARHR177560' => 'chi', 'CARHR183570' => 'chi', 'CARHR185190' => 'chi', 'CARHR187300' => 'chi', 'CARHR215510' => 'chi', 'CARHR217190' => 'chi', 'CARHR254680' => 'chi', 'CARHR258020' => 'chi', 'CARHR260230' => 'chi', 'CARHR273180' => 'chi', 'CARHR284370' => 'chi', 'CARHR286710' => 'chi', 'CARHR289190' => 'chi', 'Carub.0001s3503' => 'cru', 'Carub.0003s2796' => 'cru', 'Carub.0003s3058' => 'cru', 'Carub.0004s0683' => 'cru', 'Carub.0004s0691' => 'cru', 'Carub.0004s0714' => 'cru', 'Carub.0004s3021' => 'cru', 'Carub.0005s0341' => 'cru', 'Carub.0005s0342' => 'cru', 'Carub.0005s0915' => 'cru', 'Carub.0006s2619' => 'cru', 'Carub.0006s2635' => 'cru', 'Carub.0006s2659' => 'cru', 'Carub.0006s2660' => 'cru', 'Carub.0006s2680' => 'cru', 'Carub.0006s2832' => 'cru', 'Carub.0007s3063' => 'cru', 'Carub.0007s3065' => 'cru', 'Carub.0007s3691' => 'cru', 'Carub.0008s0635' => 'cru', 'Carub.0008s0705' => 'cru', 'Carub.0008s0707' => 'cru', 'Carub.0013s0001' => 'cru', 'Carub.0025s0007' => 'cru', 'Carub.0027s0004' => 'cru', 'Carub.0261s0001' => 'cru', 'Sp1g32400' => 'spa', 'Sp1g37620' => 'spa', 'Sp3g23850' => 'spa', 'Sp3g26120' => 'spa', 'Sp3g26210' => 'spa', 'Sp4g06320' => 'spa', 'Sp4g06330' => 'spa', 'Sp4g08350' => 'spa', 'Sp4g09070' => 'spa', 'Sp4g09180' => 'spa', 'Sp4g09630' => 'spa', 'Sp5g20050' => 'spa', 'Sp6g08240' => 'spa', 'Sp6g11640' => 'spa', 'Sp7g09910' => 'spa', 'Sp7g11040' => 'spa', 'SpUn0003_0010' => 'spa', 'SpUn0799_0010' => 'spa', 'SpUn1586_0010' => 'spa', 'THA.LOC104822205' => 'tha', 'Thhalv10000502m.g' => 'esa', 'Thhalv10001219m.g' => 'esa', 'Thhalv10002266m.g' => 'esa', 'Thhalv10002270m.g' => 'esa', 'Thhalv10002320m.g' => 'esa', 'Thhalv10002824m.g' => 'esa', 'Thhalv10002866m.g' => 'esa', 'Thhalv10002876m.g' => 'esa', 'Thhalv10003035m.g' => 'esa', 'Thhalv10003101m.g' => 'esa', 'Thhalv10003114m.g' => 'esa', 'Thhalv10003373m.g' => 'esa', 'Thhalv10005449m.g' => 'esa', 'Thhalv10005571m.g' => 'esa', 'Thhalv10009813m.g' => 'esa', 'Thhalv10011096m.g' => 'esa', 'Thhalv10015545m.g' => 'esa', 'Thhalv10015594m.g' => 'esa', 'Thhalv10015902m.g' => 'esa', 'Thhalv10015990m.g' => 'esa', 'Thhalv10017747m.g' => 'esa', 'Thhalv10019544m.g' => 'esa', 'Thhalv10019746m.g' => 'esa', 'Thhalv10019761m.g' => 'esa', 'Thhalv10019812m.g' => 'esa', 'Thhalv10021955m.g' => 'esa', 'Thhalv10021997m.g' => 'esa', 'Thhalv10022509m.g' => 'esa', 'Thhalv10023178m.g' => 'esa', 'Thhalv10023182m.g' => 'esa', 'Thhalv10023880m.g' => 'esa', 'Thhalv10023966m.g' => 'esa', 'Thhalv10023984m.g' => 'esa', 'Thhalv10027106m.g' => 'esa', 'Thhalv10027292m.g' => 'esa', 'Thhalv10028061m.g' => 'esa', 'Thhalv10028072m.g' => 'esa', 'Thhalv10029224m.g' => 'esa', 'Thhalv10029261m.g' => 'esa', 'Thhalv10029448m.g' => 'esa', 'Thhalv10029511m.g' => 'esa', 'Thhalv10029525m.g' => 'esa' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001285' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001285' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001285' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001285' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001285', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '487', 'num_species' => '12' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p19020' => 'bna', 'A01p27250' => 'bna', 'A01p27760' => 'bna', 'A02p21060' => 'bna', 'A02p21070' => 'bna', 'A02p24110' => 'bna', 'A02p26970' => 'bna', 'A02p26990' => 'bna', 'A02p27370' => 'bna', 'A02p31600' => 'bna', 'A02p33590' => 'bna', 'A02p36790' => 'bna', 'A02p36800' => 'bna', 'A02p36810' => 'bna', 'A03p39280' => 'bna', 'A03p66480' => 'bna', 'A05p01380' => 'bna', 'A05p16830' => 'bna', 'A05p21700' => 'bna', 'A05p23270' => 'bna', 'A06p14650' => 'bna', 'A06p14660' => 'bna', 'A06p22000' => 'bna', 'A06p36190' => 'bna', 'A07p09780' => 'bna', 'A08p03050' => 'bna', 'A09p14520' => 'bna', 'A09p21670' => 'bna', 'A09p24270' => 'bna', 'A09p31280' => 'bna', 'A09p31290' => 'bna', 'A09p31300' => 'bna', 'A10p07020' => 'bna', 'A10p10700' => 'bna', 'A10p12120' => 'bna', 'A10p12130' => 'bna', 'A10p12140' => 'bna', 'Aa31csc1523G10' => 'aar', 'Aa31LG10G6700' => 'aar', 'Aa31LG11G8450' => 'aar', 'Aa31LG11G8460' => 'aar', 'Aa31LG11G8470' => 'aar', 'Aa31LG1G3610' => 'aar', 'Aa31LG1G6910' => 'aar', 'Aa31LG1G6920' => 'aar', 'Aa31LG2G16260' => 'aar', 'Aa31LG3G1850' => 'aar', 'Aa31LG5G20540' => 'aar', 'Aa31LG5G23320' => 'aar', 'Aa31LG6G12780' => 'aar', 'Aa31LG6G5080' => 'aar', 'Aa31LG6G7610' => 'aar', 'Aa31LG8G11960' => 'aar', 'Aa31LG8G11990' => 'aar', 'Aa31LG8G12130' => 'aar', 'Aa31sc112G40' => 'aar', 'Aa31sc112G50' => 'aar', 'Aa31sc119G70' => 'aar', 'Aa31sc119G80' => 'aar', 'Aa31sc20G160' => 'aar', 'Aa31sc251G20' => 'aar', 'Aa31sc251G30' => 'aar', 'Aa31sc478G30' => 'aar', 'Aa31sc478G40' => 'aar', 'Aa31sc49G40' => 'aar', 'Aa31sc86G90' => 'aar', 'AL1G47430' => 'aly', 'AL1G51180' => 'aly', 'AL1G60090' => 'aly', 'AL1G65960' => 'aly', 'AL3G30210' => 'aly', 'AL3G40680' => 'aly', 'AL3G42580' => 'aly', 'AL3G44690' => 'aly', 'AL3G44710' => 'aly', 'AL3G45080' => 'aly', 'AL3G45110' => 'aly', 'AL3G45900' => 'aly', 'AL4G10770' => 'aly', 'AL4G17640' => 'aly', 'AL4G18390' => 'aly', 'AL4G20190' => 'aly', 'AL5G16910' => 'aly', 'AL5G16920' => 'aly', 'AL6G39290' => 'aly', 'AL6G40760' => 'aly', 'AL6G41380' => 'aly', 'AL6G42160' => 'aly', 'AL6G43460' => 'aly', 'AL7G43700' => 'aly', 'AL7G43910' => 'aly', 'AL7G45060' => 'aly', 'AL8G19130' => 'aly', 'AL8G21960' => 'aly', 'AL8G24550' => 'aly', 'AT1G37020' => 'ath', 'AT1G42525' => 'ath', 'AT2G10260' => 'ath', 'AT3G30305' => 'ath', 'AT3G31910' => 'ath', 'AT4G08430' => 'ath', 'AT5G28235' => 'ath', 'AT5G28810' => 'ath', 'AT5G45570' => 'ath', 'BcaB01g00219' => 'bca', 'BcaB01g01002' => 'bca', 'BcaB01g01138' => 'bca', 'BcaB01g02952' => 'bca', 'BcaB01g02953' => 'bca', 'BcaB01g02964' => 'bca', 'BcaB02g07816' => 'bca', 'BcaB02g11091' => 'bca', 'BcaB02g11283' => 'bca', 'BcaB02g11542' => 'bca', 'BcaB02g11543' => 'bca', 'BcaB03g15494' => 'bca', 'BcaB03g15495' => 'bca', 'BcaB03g15497' => 'bca', 'BcaB03g15498' => 'bca', 'BcaB03g15573' => 'bca', 'BcaB03g15580' => 'bca', 'BcaB03g16174' => 'bca', 'BcaB03g16262' => 'bca', 'BcaB03g16401' => 'bca', 'BcaB03g16504' => 'bca', 'BcaB04g17409' => 'bca', 'BcaB04g17599' => 'bca', 'BcaB04g17928' => 'bca', 'BcaB05g23429' => 'bca', 'BcaB05g23430' => 'bca', 'BcaB05g23483' => 'bca', 'BcaB06g25750' => 'bca', 'BcaB06g26565' => 'bca', 'BcaB06g26759' => 'bca', 'BcaB06g26823' => 'bca', 'BcaB06g28698' => 'bca', 'BcaB07g32960' => 'bca', 'BcaB07g32961' => 'bca', 'BcaB07g32962' => 'bca', 'BcaB07g33409' => 'bca', 'BcaB07g33410' => 'bca', 'BcaB08g35036' => 'bca', 'BcaB08g35296' => 'bca', 'BcaB08g35301' => 'bca', 'BcaC01g00776' => 'bca', 'BcaC01g02097' => 'bca', 'BcaC01g02155' => 'bca', 'BcaC01g02156' => 'bca', 'BcaC01g02157' => 'bca', 'BcaC02g10464' => 'bca', 'BcaC02g10993' => 'bca', 'BcaC02g10994' => 'bca', 'BcaC02g10995' => 'bca', 'BcaC02g11078' => 'bca', 'BcaC02g12762' => 'bca', 'BcaC03g14913' => 'bca', 'BcaC03g15031' => 'bca', 'BcaC03g15380' => 'bca', 'BcaC03g16214' => 'bca', 'BcaC03g16251' => 'bca', 'BcaC03g16362' => 'bca', 'BcaC03g16409' => 'bca', 'BcaC03g17060' => 'bca', 'BcaC03g17494' => 'bca', 'BcaC03g17776' => 'bca', 'BcaC04g19281' => 'bca', 'BcaC04g20925' => 'bca', 'BcaC05g25851' => 'bca', 'BcaC05g25966' => 'bca', 'BcaC05g27108' => 'bca', 'BcaC05g27109' => 'bca', 'BcaC05g27489' => 'bca', 'BcaC05g27865' => 'bca', 'BcaC05g28112' => 'bca', 'BcaC05g29508' => 'bca', 'BcaC05g30530' => 'bca', 'BcaC06g30937' => 'bca', 'BcaC06g34326' => 'bca', 'BcaC06g35842' => 'bca', 'BcaC06g35872' => 'bca', 'BcaC06g36181' => 'bca', 'BcaC07g38661' => 'bca', 'BcaC07g41709' => 'bca', 'BcaC07g41747' => 'bca', 'BcaC08g43217' => 'bca', 'BcaC08g43241' => 'bca', 'BcaC08g43423' => 'bca', 'BcaC08g44187' => 'bca', 'BcaC08g44579' => 'bca', 'BcaC08g45763' => 'bca', 'BcaC09g49778' => 'bca', 'BcaC09g50656' => 'bca', 'BcaNung03065' => 'bca', 'BcaNung05688' => 'bca', 'BolC1t02405H' => 'bol', 'BolC1t02406H' => 'bol', 'BolC1t03243H' => 'bol', 'BolC1t03244H' => 'bol', 'BolC1t03470H' => 'bol', 'BolC2t07251H' => 'bol', 'BolC2t07252H' => 'bol', 'BolC2t07579H' => 'bol', 'BolC2t07861H' => 'bol', 'BolC2t07862H' => 'bol', 'BolC2t08652H' => 'bol', 'BolC2t10065H' => 'bol', 'BolC2t10459H' => 'bol', 'BolC2t11860H' => 'bol', 'BolC3t14897H' => 'bol', 'BolC3t14898H' => 'bol', 'BolC3t17402H' => 'bol', 'BolC3t18089H' => 'bol', 'BolC3t18090H' => 'bol', 'BolC3t19033H' => 'bol', 'BolC3t19034H' => 'bol', 'BolC3t19035H' => 'bol', 'BolC3t19036H' => 'bol', 'BolC4t21897H' => 'bol', 'BolC4t23605H' => 'bol', 'BolC5t29915H' => 'bol', 'BolC5t30618H' => 'bol', 'BolC5t30619H' => 'bol', 'BolC5t31726H' => 'bol', 'BolC5t31727H' => 'bol', 'BolC5t32186H' => 'bol', 'BolC5t32603H' => 'bol', 'BolC5t32604H' => 'bol', 'BolC6t35851H' => 'bol', 'BolC6t35910H' => 'bol', 'BolC6t36784H' => 'bol', 'BolC6t37227H' => 'bol', 'BolC6t38666H' => 'bol', 'BolC6t39975H' => 'bol', 'BolC7t41468H' => 'bol', 'BolC7t41469H' => 'bol', 'BolC7t42880H' => 'bol', 'BolC7t42881H' => 'bol', 'BolC8t49093H' => 'bol', 'BolC9t55675H' => 'bol', 'BolC9t56617H' => 'bol', 'BolC9t56619H' => 'bol', 'BolC9t57080H' => 'bol', 'BolC9t57594H' => 'bol', 'BolC9t57745H' => 'bol', 'BolC9t59419H' => 'bol', 'BolC9t59420H' => 'bol', 'BraA01t01846Z' => 'bra', 'BraA01t02157Z' => 'bra', 'BraA02t07710Z' => 'bra', 'BraA02t07713Z' => 'bra', 'BraA02t07714Z' => 'bra', 'BraA02t07765Z' => 'bra', 'BraA02t08162Z' => 'bra', 'BraA02t08380Z' => 'bra', 'BraA02t08671Z' => 'bra', 'BraA02t08672Z' => 'bra', 'BraA03t11415Z' => 'bra', 'BraA03t13037Z' => 'bra', 'BraA03t13038Z' => 'bra', 'BraA03t13079Z' => 'bra', 'BraA03t13383Z' => 'bra', 'BraA05t19209Z' => 'bra', 'BraA05t20256Z' => 'bra', 'BraA05t20257Z' => 'bra', 'BraA05t20713Z' => 'bra', 'BraA05t20714Z' => 'bra', 'BraA05t20715Z' => 'bra', 'BraA05t20822Z' => 'bra', 'BraA05t21191Z' => 'bra', 'BraA05t21432Z' => 'bra', 'BraA06t24592Z' => 'bra', 'BraA06t25593Z' => 'bra', 'BraA06t25594Z' => 'bra', 'BraA06t25595Z' => 'bra', 'BraA07t28518Z' => 'bra', 'BraA08t32912Z' => 'bra', 'BraA08t32913Z' => 'bra', 'BraA09t37769Z' => 'bra', 'BraA09t38468Z' => 'bra', 'BraA09t39171Z' => 'bra', 'BraA10t42948Z' => 'bra', 'BraSC41t46221Z' => 'bra', 'C01p14870' => 'bna', 'C01p17430' => 'bna', 'C01p24570' => 'bna', 'C01p30150' => 'bna', 'C01p33030' => 'bna', 'C01p33040' => 'bna', 'C01p33050' => 'bna', 'C01p35070' => 'bna', 'C01p39770' => 'bna', 'C01p39780' => 'bna', 'C01p48530' => 'bna', 'C01p50410' => 'bna', 'C02p17470' => 'bna', 'C02p23920' => 'bna', 'C02p25810' => 'bna', 'C02p29930' => 'bna', 'C02p37580' => 'bna', 'C02p39910' => 'bna', 'C02p41800' => 'bna', 'C02p42390' => 'bna', 'C02p49780' => 'bna', 'C02p49790' => 'bna', 'C02p57920' => 'bna', 'C03p03110' => 'bna', 'C03p03120' => 'bna', 'C03p25070' => 'bna', 'C03p36960' => 'bna', 'C03p37020' => 'bna', 'C03p48210' => 'bna', 'C03p64080' => 'bna', 'C03p68110' => 'bna', 'C03p68120' => 'bna', 'C03p68130' => 'bna', 'C03p68140' => 'bna', 'C03p68150' => 'bna', 'C03p68510' => 'bna', 'C03p70020' => 'bna', 'C04p02540' => 'bna', 'C04p12430' => 'bna', 'C04p20750' => 'bna', 'C04p22380' => 'bna', 'C04p22390' => 'bna', 'C04p48700' => 'bna', 'C04p60190' => 'bna', 'C05p11680' => 'bna', 'C05p15150' => 'bna', 'C05p15160' => 'bna', 'C05p17420' => 'bna', 'C05p19180' => 'bna', 'C05p19190' => 'bna', 'C05p22020' => 'bna', 'C05p29930' => 'bna', 'C05p34540' => 'bna', 'C05p34550' => 'bna', 'C05p38640' => 'bna', 'C05p58100' => 'bna', 'C06p08290' => 'bna', 'C06p12830' => 'bna', 'C06p15920' => 'bna', 'C06p20440' => 'bna', 'C06p20450' => 'bna', 'C06p20460' => 'bna', 'C06p24190' => 'bna', 'C06p24210' => 'bna', 'C06p26050' => 'bna', 'C06p35450' => 'bna', 'C07p01710' => 'bna', 'C07p10190' => 'bna', 'C07p10200' => 'bna', 'C07p20730' => 'bna', 'C07p23590' => 'bna', 'C07p30310' => 'bna', 'C07p30320' => 'bna', 'C07p55740' => 'bna', 'C08p11380' => 'bna', 'C09p07350' => 'bna', 'C09p20890' => 'bna', 'C09p23470' => 'bna', 'C09p37840' => 'bna', 'C09p37850' => 'bna', 'C09p55130' => 'bna', 'C09p65960' => 'bna', 'C09p65970' => 'bna', 'C09p74690' => 'bna', 'CARHR032540' => 'chi', 'CARHR033910' => 'chi', 'CARHR034730' => 'chi', 'CARHR037550' => 'chi', 'CARHR057390' => 'chi', 'CARHR104030' => 'chi', 'CARHR104690' => 'chi', 'CARHR107370' => 'chi', 'CARHR116100' => 'chi', 'CARHR116190' => 'chi', 'CARHR117470' => 'chi', 'CARHR117480' => 'chi', 'CARHR118760' => 'chi', 'CARHR150320' => 'chi', 'CARHR150330' => 'chi', 'CARHR150510' => 'chi', 'CARHR152970' => 'chi', 'CARHR153270' => 'chi', 'CARHR159290' => 'chi', 'CARHR159300' => 'chi', 'CARHR177560' => 'chi', 'CARHR183570' => 'chi', 'CARHR185190' => 'chi', 'CARHR187300' => 'chi', 'CARHR215510' => 'chi', 'CARHR217190' => 'chi', 'CARHR254680' => 'chi', 'CARHR258020' => 'chi', 'CARHR260230' => 'chi', 'CARHR273180' => 'chi', 'CARHR284370' => 'chi', 'CARHR286710' => 'chi', 'CARHR289190' => 'chi', 'Carub.0001s3503' => 'cru', 'Carub.0003s2796' => 'cru', 'Carub.0003s3058' => 'cru', 'Carub.0004s0683' => 'cru', 'Carub.0004s0691' => 'cru', 'Carub.0004s0714' => 'cru', 'Carub.0004s3021' => 'cru', 'Carub.0005s0341' => 'cru', 'Carub.0005s0342' => 'cru', 'Carub.0005s0915' => 'cru', 'Carub.0006s2619' => 'cru', 'Carub.0006s2635' => 'cru', 'Carub.0006s2659' => 'cru', 'Carub.0006s2660' => 'cru', 'Carub.0006s2680' => 'cru', 'Carub.0006s2832' => 'cru', 'Carub.0007s3063' => 'cru', 'Carub.0007s3065' => 'cru', 'Carub.0007s3691' => 'cru', 'Carub.0008s0635' => 'cru', 'Carub.0008s0705' => 'cru', 'Carub.0008s0707' => 'cru', 'Carub.0013s0001' => 'cru', 'Carub.0025s0007' => 'cru', 'Carub.0027s0004' => 'cru', 'Carub.0261s0001' => 'cru', 'Sp1g32400' => 'spa', 'Sp1g37620' => 'spa', 'Sp3g23850' => 'spa', 'Sp3g26120' => 'spa', 'Sp3g26210' => 'spa', 'Sp4g06320' => 'spa', 'Sp4g06330' => 'spa', 'Sp4g08350' => 'spa', 'Sp4g09070' => 'spa', 'Sp4g09180' => 'spa', 'Sp4g09630' => 'spa', 'Sp5g20050' => 'spa', 'Sp6g08240' => 'spa', 'Sp6g11640' => 'spa', 'Sp7g09910' => 'spa', 'Sp7g11040' => 'spa', 'SpUn0003_0010' => 'spa', 'SpUn0799_0010' => 'spa', 'SpUn1586_0010' => 'spa', 'THA.LOC104822205' => 'tha', 'Thhalv10000502m.g' => 'esa', 'Thhalv10001219m.g' => 'esa', 'Thhalv10002266m.g' => 'esa', 'Thhalv10002270m.g' => 'esa', 'Thhalv10002320m.g' => 'esa', 'Thhalv10002824m.g' => 'esa', 'Thhalv10002866m.g' => 'esa', 'Thhalv10002876m.g' => 'esa', 'Thhalv10003035m.g' => 'esa', 'Thhalv10003101m.g' => 'esa', 'Thhalv10003114m.g' => 'esa', 'Thhalv10003373m.g' => 'esa', 'Thhalv10005449m.g' => 'esa', 'Thhalv10005571m.g' => 'esa', 'Thhalv10009813m.g' => 'esa', 'Thhalv10011096m.g' => 'esa', 'Thhalv10015545m.g' => 'esa', 'Thhalv10015594m.g' => 'esa', 'Thhalv10015902m.g' => 'esa', 'Thhalv10015990m.g' => 'esa', 'Thhalv10017747m.g' => 'esa', 'Thhalv10019544m.g' => 'esa', 'Thhalv10019746m.g' => 'esa', 'Thhalv10019761m.g' => 'esa', 'Thhalv10019812m.g' => 'esa', 'Thhalv10021955m.g' => 'esa', 'Thhalv10021997m.g' => 'esa', 'Thhalv10022509m.g' => 'esa', 'Thhalv10023178m.g' => 'esa', 'Thhalv10023182m.g' => 'esa', 'Thhalv10023880m.g' => 'esa', 'Thhalv10023966m.g' => 'esa', 'Thhalv10023984m.g' => 'esa', 'Thhalv10027106m.g' => 'esa', 'Thhalv10027292m.g' => 'esa', 'Thhalv10028061m.g' => 'esa', 'Thhalv10028072m.g' => 'esa', 'Thhalv10029224m.g' => 'esa', 'Thhalv10029261m.g' => 'esa', 'Thhalv10029448m.g' => 'esa', 'Thhalv10029511m.g' => 'esa', 'Thhalv10029525m.g' => 'esa' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001285', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001285' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001285', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '487', 'num_species' => '12' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001285' ) ), 'genes' => array( 'A01p19020' => 'bna', 'A01p27250' => 'bna', 'A01p27760' => 'bna', 'A02p21060' => 'bna', 'A02p21070' => 'bna', 'A02p24110' => 'bna', 'A02p26970' => 'bna', 'A02p26990' => 'bna', 'A02p27370' => 'bna', 'A02p31600' => 'bna', 'A02p33590' => 'bna', 'A02p36790' => 'bna', 'A02p36800' => 'bna', 'A02p36810' => 'bna', 'A03p39280' => 'bna', 'A03p66480' => 'bna', 'A05p01380' => 'bna', 'A05p16830' => 'bna', 'A05p21700' => 'bna', 'A05p23270' => 'bna', 'A06p14650' => 'bna', 'A06p14660' => 'bna', 'A06p22000' => 'bna', 'A06p36190' => 'bna', 'A07p09780' => 'bna', 'A08p03050' => 'bna', 'A09p14520' => 'bna', 'A09p21670' => 'bna', 'A09p24270' => 'bna', 'A09p31280' => 'bna', 'A09p31290' => 'bna', 'A09p31300' => 'bna', 'A10p07020' => 'bna', 'A10p10700' => 'bna', 'A10p12120' => 'bna', 'A10p12130' => 'bna', 'A10p12140' => 'bna', 'Aa31csc1523G10' => 'aar', 'Aa31LG10G6700' => 'aar', 'Aa31LG11G8450' => 'aar', 'Aa31LG11G8460' => 'aar', 'Aa31LG11G8470' => 'aar', 'Aa31LG1G3610' => 'aar', 'Aa31LG1G6910' => 'aar', 'Aa31LG1G6920' => 'aar', 'Aa31LG2G16260' => 'aar', 'Aa31LG3G1850' => 'aar', 'Aa31LG5G20540' => 'aar', 'Aa31LG5G23320' => 'aar', 'Aa31LG6G12780' => 'aar', 'Aa31LG6G5080' => 'aar', 'Aa31LG6G7610' => 'aar', 'Aa31LG8G11960' => 'aar', 'Aa31LG8G11990' => 'aar', 'Aa31LG8G12130' => 'aar', 'Aa31sc112G40' => 'aar', 'Aa31sc112G50' => 'aar', 'Aa31sc119G70' => 'aar', 'Aa31sc119G80' => 'aar', 'Aa31sc20G160' => 'aar', 'Aa31sc251G20' => 'aar', 'Aa31sc251G30' => 'aar', 'Aa31sc478G30' => 'aar', 'Aa31sc478G40' => 'aar', 'Aa31sc49G40' => 'aar', 'Aa31sc86G90' => 'aar', 'AL1G47430' => 'aly', 'AL1G51180' => 'aly', 'AL1G60090' => 'aly', 'AL1G65960' => 'aly', 'AL3G30210' => 'aly', 'AL3G40680' => 'aly', 'AL3G42580' => 'aly', 'AL3G44690' => 'aly', 'AL3G44710' => 'aly', 'AL3G45080' => 'aly', 'AL3G45110' => 'aly', 'AL3G45900' => 'aly', 'AL4G10770' => 'aly', 'AL4G17640' => 'aly', 'AL4G18390' => 'aly', 'AL4G20190' => 'aly', 'AL5G16910' => 'aly', 'AL5G16920' => 'aly', 'AL6G39290' => 'aly', 'AL6G40760' => 'aly', 'AL6G41380' => 'aly', 'AL6G42160' => 'aly', 'AL6G43460' => 'aly', 'AL7G43700' => 'aly', 'AL7G43910' => 'aly', 'AL7G45060' => 'aly', 'AL8G19130' => 'aly', 'AL8G21960' => 'aly', 'AL8G24550' => 'aly', 'AT1G37020' => 'ath', 'AT1G42525' => 'ath', 'AT2G10260' => 'ath', 'AT3G30305' => 'ath', 'AT3G31910' => 'ath', 'AT4G08430' => 'ath', 'AT5G28235' => 'ath', 'AT5G28810' => 'ath', 'AT5G45570' => 'ath', 'BcaB01g00219' => 'bca', 'BcaB01g01002' => 'bca', 'BcaB01g01138' => 'bca', 'BcaB01g02952' => 'bca', 'BcaB01g02953' => 'bca', 'BcaB01g02964' => 'bca', 'BcaB02g07816' => 'bca', 'BcaB02g11091' => 'bca', 'BcaB02g11283' => 'bca', 'BcaB02g11542' => 'bca', 'BcaB02g11543' => 'bca', 'BcaB03g15494' => 'bca', 'BcaB03g15495' => 'bca', 'BcaB03g15497' => 'bca', 'BcaB03g15498' => 'bca', 'BcaB03g15573' => 'bca', 'BcaB03g15580' => 'bca', 'BcaB03g16174' => 'bca', 'BcaB03g16262' => 'bca', 'BcaB03g16401' => 'bca', 'BcaB03g16504' => 'bca', 'BcaB04g17409' => 'bca', 'BcaB04g17599' => 'bca', 'BcaB04g17928' => 'bca', 'BcaB05g23429' => 'bca', 'BcaB05g23430' => 'bca', 'BcaB05g23483' => 'bca', 'BcaB06g25750' => 'bca', 'BcaB06g26565' => 'bca', 'BcaB06g26759' => 'bca', 'BcaB06g26823' => 'bca', 'BcaB06g28698' => 'bca', 'BcaB07g32960' => 'bca', 'BcaB07g32961' => 'bca', 'BcaB07g32962' => 'bca', 'BcaB07g33409' => 'bca', 'BcaB07g33410' => 'bca', 'BcaB08g35036' => 'bca', 'BcaB08g35296' => 'bca', 'BcaB08g35301' => 'bca', 'BcaC01g00776' => 'bca', 'BcaC01g02097' => 'bca', 'BcaC01g02155' => 'bca', 'BcaC01g02156' => 'bca', 'BcaC01g02157' => 'bca', 'BcaC02g10464' => 'bca', 'BcaC02g10993' => 'bca', 'BcaC02g10994' => 'bca', 'BcaC02g10995' => 'bca', 'BcaC02g11078' => 'bca', 'BcaC02g12762' => 'bca', 'BcaC03g14913' => 'bca', 'BcaC03g15031' => 'bca', 'BcaC03g15380' => 'bca', 'BcaC03g16214' => 'bca', 'BcaC03g16251' => 'bca', 'BcaC03g16362' => 'bca', 'BcaC03g16409' => 'bca', 'BcaC03g17060' => 'bca', 'BcaC03g17494' => 'bca', 'BcaC03g17776' => 'bca', 'BcaC04g19281' => 'bca', 'BcaC04g20925' => 'bca', 'BcaC05g25851' => 'bca', 'BcaC05g25966' => 'bca', 'BcaC05g27108' => 'bca', 'BcaC05g27109' => 'bca', 'BcaC05g27489' => 'bca', 'BcaC05g27865' => 'bca', 'BcaC05g28112' => 'bca', 'BcaC05g29508' => 'bca', 'BcaC05g30530' => 'bca', 'BcaC06g30937' => 'bca', 'BcaC06g34326' => 'bca', 'BcaC06g35842' => 'bca', 'BcaC06g35872' => 'bca', 'BcaC06g36181' => 'bca', 'BcaC07g38661' => 'bca', 'BcaC07g41709' => 'bca', 'BcaC07g41747' => 'bca', 'BcaC08g43217' => 'bca', 'BcaC08g43241' => 'bca', 'BcaC08g43423' => 'bca', 'BcaC08g44187' => 'bca', 'BcaC08g44579' => 'bca', 'BcaC08g45763' => 'bca', 'BcaC09g49778' => 'bca', 'BcaC09g50656' => 'bca', 'BcaNung03065' => 'bca', 'BcaNung05688' => 'bca', 'BolC1t02405H' => 'bol', 'BolC1t02406H' => 'bol', 'BolC1t03243H' => 'bol', 'BolC1t03244H' => 'bol', 'BolC1t03470H' => 'bol', 'BolC2t07251H' => 'bol', 'BolC2t07252H' => 'bol', 'BolC2t07579H' => 'bol', 'BolC2t07861H' => 'bol', 'BolC2t07862H' => 'bol', 'BolC2t08652H' => 'bol', 'BolC2t10065H' => 'bol', 'BolC2t10459H' => 'bol', 'BolC2t11860H' => 'bol', 'BolC3t14897H' => 'bol', 'BolC3t14898H' => 'bol', 'BolC3t17402H' => 'bol', 'BolC3t18089H' => 'bol', 'BolC3t18090H' => 'bol', 'BolC3t19033H' => 'bol', 'BolC3t19034H' => 'bol', 'BolC3t19035H' => 'bol', 'BolC3t19036H' => 'bol', 'BolC4t21897H' => 'bol', 'BolC4t23605H' => 'bol', 'BolC5t29915H' => 'bol', 'BolC5t30618H' => 'bol', 'BolC5t30619H' => 'bol', 'BolC5t31726H' => 'bol', 'BolC5t31727H' => 'bol', 'BolC5t32186H' => 'bol', 'BolC5t32603H' => 'bol', 'BolC5t32604H' => 'bol', 'BolC6t35851H' => 'bol', 'BolC6t35910H' => 'bol', 'BolC6t36784H' => 'bol', 'BolC6t37227H' => 'bol', 'BolC6t38666H' => 'bol', 'BolC6t39975H' => 'bol', 'BolC7t41468H' => 'bol', 'BolC7t41469H' => 'bol', 'BolC7t42880H' => 'bol', 'BolC7t42881H' => 'bol', 'BolC8t49093H' => 'bol', 'BolC9t55675H' => 'bol', 'BolC9t56617H' => 'bol', 'BolC9t56619H' => 'bol', 'BolC9t57080H' => 'bol', 'BolC9t57594H' => 'bol', 'BolC9t57745H' => 'bol', 'BolC9t59419H' => 'bol', 'BolC9t59420H' => 'bol', 'BraA01t01846Z' => 'bra', 'BraA01t02157Z' => 'bra', 'BraA02t07710Z' => 'bra', 'BraA02t07713Z' => 'bra', 'BraA02t07714Z' => 'bra', 'BraA02t07765Z' => 'bra', 'BraA02t08162Z' => 'bra', 'BraA02t08380Z' => 'bra', 'BraA02t08671Z' => 'bra', 'BraA02t08672Z' => 'bra', 'BraA03t11415Z' => 'bra', 'BraA03t13037Z' => 'bra', 'BraA03t13038Z' => 'bra', 'BraA03t13079Z' => 'bra', 'BraA03t13383Z' => 'bra', 'BraA05t19209Z' => 'bra', 'BraA05t20256Z' => 'bra', 'BraA05t20257Z' => 'bra', 'BraA05t20713Z' => 'bra', 'BraA05t20714Z' => 'bra', 'BraA05t20715Z' => 'bra', 'BraA05t20822Z' => 'bra', 'BraA05t21191Z' => 'bra', 'BraA05t21432Z' => 'bra', 'BraA06t24592Z' => 'bra', 'BraA06t25593Z' => 'bra', 'BraA06t25594Z' => 'bra', 'BraA06t25595Z' => 'bra', 'BraA07t28518Z' => 'bra', 'BraA08t32912Z' => 'bra', 'BraA08t32913Z' => 'bra', 'BraA09t37769Z' => 'bra', 'BraA09t38468Z' => 'bra', 'BraA09t39171Z' => 'bra', 'BraA10t42948Z' => 'bra', 'BraSC41t46221Z' => 'bra', 'C01p14870' => 'bna', 'C01p17430' => 'bna', 'C01p24570' => 'bna', 'C01p30150' => 'bna', 'C01p33030' => 'bna', 'C01p33040' => 'bna', 'C01p33050' => 'bna', 'C01p35070' => 'bna', 'C01p39770' => 'bna', 'C01p39780' => 'bna', 'C01p48530' => 'bna', 'C01p50410' => 'bna', 'C02p17470' => 'bna', 'C02p23920' => 'bna', 'C02p25810' => 'bna', 'C02p29930' => 'bna', 'C02p37580' => 'bna', 'C02p39910' => 'bna', 'C02p41800' => 'bna', 'C02p42390' => 'bna', 'C02p49780' => 'bna', 'C02p49790' => 'bna', 'C02p57920' => 'bna', 'C03p03110' => 'bna', 'C03p03120' => 'bna', 'C03p25070' => 'bna', 'C03p36960' => 'bna', 'C03p37020' => 'bna', 'C03p48210' => 'bna', 'C03p64080' => 'bna', 'C03p68110' => 'bna', 'C03p68120' => 'bna', 'C03p68130' => 'bna', 'C03p68140' => 'bna', 'C03p68150' => 'bna', 'C03p68510' => 'bna', 'C03p70020' => 'bna', 'C04p02540' => 'bna', 'C04p12430' => 'bna', 'C04p20750' => 'bna', 'C04p22380' => 'bna', 'C04p22390' => 'bna', 'C04p48700' => 'bna', 'C04p60190' => 'bna', 'C05p11680' => 'bna', 'C05p15150' => 'bna', 'C05p15160' => 'bna', 'C05p17420' => 'bna', 'C05p19180' => 'bna', 'C05p19190' => 'bna', 'C05p22020' => 'bna', 'C05p29930' => 'bna', 'C05p34540' => 'bna', 'C05p34550' => 'bna', 'C05p38640' => 'bna', 'C05p58100' => 'bna', 'C06p08290' => 'bna', 'C06p12830' => 'bna', 'C06p15920' => 'bna', 'C06p20440' => 'bna', 'C06p20450' => 'bna', 'C06p20460' => 'bna', 'C06p24190' => 'bna', 'C06p24210' => 'bna', 'C06p26050' => 'bna', 'C06p35450' => 'bna', 'C07p01710' => 'bna', 'C07p10190' => 'bna', 'C07p10200' => 'bna', 'C07p20730' => 'bna', 'C07p23590' => 'bna', 'C07p30310' => 'bna', 'C07p30320' => 'bna', 'C07p55740' => 'bna', 'C08p11380' => 'bna', 'C09p07350' => 'bna', 'C09p20890' => 'bna', 'C09p23470' => 'bna', 'C09p37840' => 'bna', 'C09p37850' => 'bna', 'C09p55130' => 'bna', 'C09p65960' => 'bna', 'C09p65970' => 'bna', 'C09p74690' => 'bna', 'CARHR032540' => 'chi', 'CARHR033910' => 'chi', 'CARHR034730' => 'chi', 'CARHR037550' => 'chi', 'CARHR057390' => 'chi', 'CARHR104030' => 'chi', 'CARHR104690' => 'chi', 'CARHR107370' => 'chi', 'CARHR116100' => 'chi', 'CARHR116190' => 'chi', 'CARHR117470' => 'chi', 'CARHR117480' => 'chi', 'CARHR118760' => 'chi', 'CARHR150320' => 'chi', 'CARHR150330' => 'chi', 'CARHR150510' => 'chi', 'CARHR152970' => 'chi', 'CARHR153270' => 'chi', 'CARHR159290' => 'chi', 'CARHR159300' => 'chi', 'CARHR177560' => 'chi', 'CARHR183570' => 'chi', 'CARHR185190' => 'chi', 'CARHR187300' => 'chi', 'CARHR215510' => 'chi', 'CARHR217190' => 'chi', 'CARHR254680' => 'chi', 'CARHR258020' => 'chi', 'CARHR260230' => 'chi', 'CARHR273180' => 'chi', 'CARHR284370' => 'chi', 'CARHR286710' => 'chi', 'CARHR289190' => 'chi', 'Carub.0001s3503' => 'cru', 'Carub.0003s2796' => 'cru', 'Carub.0003s3058' => 'cru', 'Carub.0004s0683' => 'cru', 'Carub.0004s0691' => 'cru', 'Carub.0004s0714' => 'cru', 'Carub.0004s3021' => 'cru', 'Carub.0005s0341' => 'cru', 'Carub.0005s0342' => 'cru', 'Carub.0005s0915' => 'cru', 'Carub.0006s2619' => 'cru', 'Carub.0006s2635' => 'cru', 'Carub.0006s2659' => 'cru', 'Carub.0006s2660' => 'cru', 'Carub.0006s2680' => 'cru', 'Carub.0006s2832' => 'cru', 'Carub.0007s3063' => 'cru', 'Carub.0007s3065' => 'cru', 'Carub.0007s3691' => 'cru', 'Carub.0008s0635' => 'cru', 'Carub.0008s0705' => 'cru', 'Carub.0008s0707' => 'cru', 'Carub.0013s0001' => 'cru', 'Carub.0025s0007' => 'cru', 'Carub.0027s0004' => 'cru', 'Carub.0261s0001' => 'cru', 'Sp1g32400' => 'spa', 'Sp1g37620' => 'spa', 'Sp3g23850' => 'spa', 'Sp3g26120' => 'spa', 'Sp3g26210' => 'spa', 'Sp4g06320' => 'spa', 'Sp4g06330' => 'spa', 'Sp4g08350' => 'spa', 'Sp4g09070' => 'spa', 'Sp4g09180' => 'spa', 'Sp4g09630' => 'spa', 'Sp5g20050' => 'spa', 'Sp6g08240' => 'spa', 'Sp6g11640' => 'spa', 'Sp7g09910' => 'spa', 'Sp7g11040' => 'spa', 'SpUn0003_0010' => 'spa', 'SpUn0799_0010' => 'spa', 'SpUn1586_0010' => 'spa', 'THA.LOC104822205' => 'tha', 'Thhalv10000502m.g' => 'esa', 'Thhalv10001219m.g' => 'esa', 'Thhalv10002266m.g' => 'esa', 'Thhalv10002270m.g' => 'esa', 'Thhalv10002320m.g' => 'esa', 'Thhalv10002824m.g' => 'esa', 'Thhalv10002866m.g' => 'esa', 'Thhalv10002876m.g' => 'esa', 'Thhalv10003035m.g' => 'esa', 'Thhalv10003101m.g' => 'esa', 'Thhalv10003114m.g' => 'esa', 'Thhalv10003373m.g' => 'esa', 'Thhalv10005449m.g' => 'esa', 'Thhalv10005571m.g' => 'esa', 'Thhalv10009813m.g' => 'esa', 'Thhalv10011096m.g' => 'esa', 'Thhalv10015545m.g' => 'esa', 'Thhalv10015594m.g' => 'esa', 'Thhalv10015902m.g' => 'esa', 'Thhalv10015990m.g' => 'esa', 'Thhalv10017747m.g' => 'esa', 'Thhalv10019544m.g' => 'esa', 'Thhalv10019746m.g' => 'esa', 'Thhalv10019761m.g' => 'esa', 'Thhalv10019812m.g' => 'esa', 'Thhalv10021955m.g' => 'esa', 'Thhalv10021997m.g' => 'esa', 'Thhalv10022509m.g' => 'esa', 'Thhalv10023178m.g' => 'esa', 'Thhalv10023182m.g' => 'esa', 'Thhalv10023880m.g' => 'esa', 'Thhalv10023966m.g' => 'esa', 'Thhalv10023984m.g' => 'esa', 'Thhalv10027106m.g' => 'esa', 'Thhalv10027292m.g' => 'esa', 'Thhalv10028061m.g' => 'esa', 'Thhalv10028072m.g' => 'esa', 'Thhalv10029224m.g' => 'esa', 'Thhalv10029261m.g' => 'esa', 'Thhalv10029448m.g' => 'esa', 'Thhalv10029511m.g' => 'esa', 'Thhalv10029525m.g' => 'esa' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001285' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001285' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001285' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001285' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001285', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '487', 'num_species' => '12' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p19020' => 'bna', 'A01p27250' => 'bna', 'A01p27760' => 'bna', 'A02p21060' => 'bna', 'A02p21070' => 'bna', 'A02p24110' => 'bna', 'A02p26970' => 'bna', 'A02p26990' => 'bna', 'A02p27370' => 'bna', 'A02p31600' => 'bna', 'A02p33590' => 'bna', 'A02p36790' => 'bna', 'A02p36800' => 'bna', 'A02p36810' => 'bna', 'A03p39280' => 'bna', 'A03p66480' => 'bna', 'A05p01380' => 'bna', 'A05p16830' => 'bna', 'A05p21700' => 'bna', 'A05p23270' => 'bna', 'A06p14650' => 'bna', 'A06p14660' => 'bna', 'A06p22000' => 'bna', 'A06p36190' => 'bna', 'A07p09780' => 'bna', 'A08p03050' => 'bna', 'A09p14520' => 'bna', 'A09p21670' => 'bna', 'A09p24270' => 'bna', 'A09p31280' => 'bna', 'A09p31290' => 'bna', 'A09p31300' => 'bna', 'A10p07020' => 'bna', 'A10p10700' => 'bna', 'A10p12120' => 'bna', 'A10p12130' => 'bna', 'A10p12140' => 'bna', 'Aa31csc1523G10' => 'aar', 'Aa31LG10G6700' => 'aar', 'Aa31LG11G8450' => 'aar', 'Aa31LG11G8460' => 'aar', 'Aa31LG11G8470' => 'aar', 'Aa31LG1G3610' => 'aar', 'Aa31LG1G6910' => 'aar', 'Aa31LG1G6920' => 'aar', 'Aa31LG2G16260' => 'aar', 'Aa31LG3G1850' => 'aar', 'Aa31LG5G20540' => 'aar', 'Aa31LG5G23320' => 'aar', 'Aa31LG6G12780' => 'aar', 'Aa31LG6G5080' => 'aar', 'Aa31LG6G7610' => 'aar', 'Aa31LG8G11960' => 'aar', 'Aa31LG8G11990' => 'aar', 'Aa31LG8G12130' => 'aar', 'Aa31sc112G40' => 'aar', 'Aa31sc112G50' => 'aar', 'Aa31sc119G70' => 'aar', 'Aa31sc119G80' => 'aar', 'Aa31sc20G160' => 'aar', 'Aa31sc251G20' => 'aar', 'Aa31sc251G30' => 'aar', 'Aa31sc478G30' => 'aar', 'Aa31sc478G40' => 'aar', 'Aa31sc49G40' => 'aar', 'Aa31sc86G90' => 'aar', 'AL1G47430' => 'aly', 'AL1G51180' => 'aly', 'AL1G60090' => 'aly', 'AL1G65960' => 'aly', 'AL3G30210' => 'aly', 'AL3G40680' => 'aly', 'AL3G42580' => 'aly', 'AL3G44690' => 'aly', 'AL3G44710' => 'aly', 'AL3G45080' => 'aly', 'AL3G45110' => 'aly', 'AL3G45900' => 'aly', 'AL4G10770' => 'aly', 'AL4G17640' => 'aly', 'AL4G18390' => 'aly', 'AL4G20190' => 'aly', 'AL5G16910' => 'aly', 'AL5G16920' => 'aly', 'AL6G39290' => 'aly', 'AL6G40760' => 'aly', 'AL6G41380' => 'aly', 'AL6G42160' => 'aly', 'AL6G43460' => 'aly', 'AL7G43700' => 'aly', 'AL7G43910' => 'aly', 'AL7G45060' => 'aly', 'AL8G19130' => 'aly', 'AL8G21960' => 'aly', 'AL8G24550' => 'aly', 'AT1G37020' => 'ath', 'AT1G42525' => 'ath', 'AT2G10260' => 'ath', 'AT3G30305' => 'ath', 'AT3G31910' => 'ath', 'AT4G08430' => 'ath', 'AT5G28235' => 'ath', 'AT5G28810' => 'ath', 'AT5G45570' => 'ath', 'BcaB01g00219' => 'bca', 'BcaB01g01002' => 'bca', 'BcaB01g01138' => 'bca', 'BcaB01g02952' => 'bca', 'BcaB01g02953' => 'bca', 'BcaB01g02964' => 'bca', 'BcaB02g07816' => 'bca', 'BcaB02g11091' => 'bca', 'BcaB02g11283' => 'bca', 'BcaB02g11542' => 'bca', 'BcaB02g11543' => 'bca', 'BcaB03g15494' => 'bca', 'BcaB03g15495' => 'bca', 'BcaB03g15497' => 'bca', 'BcaB03g15498' => 'bca', 'BcaB03g15573' => 'bca', 'BcaB03g15580' => 'bca', 'BcaB03g16174' => 'bca', 'BcaB03g16262' => 'bca', 'BcaB03g16401' => 'bca', 'BcaB03g16504' => 'bca', 'BcaB04g17409' => 'bca', 'BcaB04g17599' => 'bca', 'BcaB04g17928' => 'bca', 'BcaB05g23429' => 'bca', 'BcaB05g23430' => 'bca', 'BcaB05g23483' => 'bca', 'BcaB06g25750' => 'bca', 'BcaB06g26565' => 'bca', 'BcaB06g26759' => 'bca', 'BcaB06g26823' => 'bca', 'BcaB06g28698' => 'bca', 'BcaB07g32960' => 'bca', 'BcaB07g32961' => 'bca', 'BcaB07g32962' => 'bca', 'BcaB07g33409' => 'bca', 'BcaB07g33410' => 'bca', 'BcaB08g35036' => 'bca', 'BcaB08g35296' => 'bca', 'BcaB08g35301' => 'bca', 'BcaC01g00776' => 'bca', 'BcaC01g02097' => 'bca', 'BcaC01g02155' => 'bca', 'BcaC01g02156' => 'bca', 'BcaC01g02157' => 'bca', 'BcaC02g10464' => 'bca', 'BcaC02g10993' => 'bca', 'BcaC02g10994' => 'bca', 'BcaC02g10995' => 'bca', 'BcaC02g11078' => 'bca', 'BcaC02g12762' => 'bca', 'BcaC03g14913' => 'bca', 'BcaC03g15031' => 'bca', 'BcaC03g15380' => 'bca', 'BcaC03g16214' => 'bca', 'BcaC03g16251' => 'bca', 'BcaC03g16362' => 'bca', 'BcaC03g16409' => 'bca', 'BcaC03g17060' => 'bca', 'BcaC03g17494' => 'bca', 'BcaC03g17776' => 'bca', 'BcaC04g19281' => 'bca', 'BcaC04g20925' => 'bca', 'BcaC05g25851' => 'bca', 'BcaC05g25966' => 'bca', 'BcaC05g27108' => 'bca', 'BcaC05g27109' => 'bca', 'BcaC05g27489' => 'bca', 'BcaC05g27865' => 'bca', 'BcaC05g28112' => 'bca', 'BcaC05g29508' => 'bca', 'BcaC05g30530' => 'bca', 'BcaC06g30937' => 'bca', 'BcaC06g34326' => 'bca', 'BcaC06g35842' => 'bca', 'BcaC06g35872' => 'bca', 'BcaC06g36181' => 'bca', 'BcaC07g38661' => 'bca', 'BcaC07g41709' => 'bca', 'BcaC07g41747' => 'bca', 'BcaC08g43217' => 'bca', 'BcaC08g43241' => 'bca', 'BcaC08g43423' => 'bca', 'BcaC08g44187' => 'bca', 'BcaC08g44579' => 'bca', 'BcaC08g45763' => 'bca', 'BcaC09g49778' => 'bca', 'BcaC09g50656' => 'bca', 'BcaNung03065' => 'bca', 'BcaNung05688' => 'bca', 'BolC1t02405H' => 'bol', 'BolC1t02406H' => 'bol', 'BolC1t03243H' => 'bol', 'BolC1t03244H' => 'bol', 'BolC1t03470H' => 'bol', 'BolC2t07251H' => 'bol', 'BolC2t07252H' => 'bol', 'BolC2t07579H' => 'bol', 'BolC2t07861H' => 'bol', 'BolC2t07862H' => 'bol', 'BolC2t08652H' => 'bol', 'BolC2t10065H' => 'bol', 'BolC2t10459H' => 'bol', 'BolC2t11860H' => 'bol', 'BolC3t14897H' => 'bol', 'BolC3t14898H' => 'bol', 'BolC3t17402H' => 'bol', 'BolC3t18089H' => 'bol', 'BolC3t18090H' => 'bol', 'BolC3t19033H' => 'bol', 'BolC3t19034H' => 'bol', 'BolC3t19035H' => 'bol', 'BolC3t19036H' => 'bol', 'BolC4t21897H' => 'bol', 'BolC4t23605H' => 'bol', 'BolC5t29915H' => 'bol', 'BolC5t30618H' => 'bol', 'BolC5t30619H' => 'bol', 'BolC5t31726H' => 'bol', 'BolC5t31727H' => 'bol', 'BolC5t32186H' => 'bol', 'BolC5t32603H' => 'bol', 'BolC5t32604H' => 'bol', 'BolC6t35851H' => 'bol', 'BolC6t35910H' => 'bol', 'BolC6t36784H' => 'bol', 'BolC6t37227H' => 'bol', 'BolC6t38666H' => 'bol', 'BolC6t39975H' => 'bol', 'BolC7t41468H' => 'bol', 'BolC7t41469H' => 'bol', 'BolC7t42880H' => 'bol', 'BolC7t42881H' => 'bol', 'BolC8t49093H' => 'bol', 'BolC9t55675H' => 'bol', 'BolC9t56617H' => 'bol', 'BolC9t56619H' => 'bol', 'BolC9t57080H' => 'bol', 'BolC9t57594H' => 'bol', 'BolC9t57745H' => 'bol', 'BolC9t59419H' => 'bol', 'BolC9t59420H' => 'bol', 'BraA01t01846Z' => 'bra', 'BraA01t02157Z' => 'bra', 'BraA02t07710Z' => 'bra', 'BraA02t07713Z' => 'bra', 'BraA02t07714Z' => 'bra', 'BraA02t07765Z' => 'bra', 'BraA02t08162Z' => 'bra', 'BraA02t08380Z' => 'bra', 'BraA02t08671Z' => 'bra', 'BraA02t08672Z' => 'bra', 'BraA03t11415Z' => 'bra', 'BraA03t13037Z' => 'bra', 'BraA03t13038Z' => 'bra', 'BraA03t13079Z' => 'bra', 'BraA03t13383Z' => 'bra', 'BraA05t19209Z' => 'bra', 'BraA05t20256Z' => 'bra', 'BraA05t20257Z' => 'bra', 'BraA05t20713Z' => 'bra', 'BraA05t20714Z' => 'bra', 'BraA05t20715Z' => 'bra', 'BraA05t20822Z' => 'bra', 'BraA05t21191Z' => 'bra', 'BraA05t21432Z' => 'bra', 'BraA06t24592Z' => 'bra', 'BraA06t25593Z' => 'bra', 'BraA06t25594Z' => 'bra', 'BraA06t25595Z' => 'bra', 'BraA07t28518Z' => 'bra', 'BraA08t32912Z' => 'bra', 'BraA08t32913Z' => 'bra', 'BraA09t37769Z' => 'bra', 'BraA09t38468Z' => 'bra', 'BraA09t39171Z' => 'bra', 'BraA10t42948Z' => 'bra', 'BraSC41t46221Z' => 'bra', 'C01p14870' => 'bna', 'C01p17430' => 'bna', 'C01p24570' => 'bna', 'C01p30150' => 'bna', 'C01p33030' => 'bna', 'C01p33040' => 'bna', 'C01p33050' => 'bna', 'C01p35070' => 'bna', 'C01p39770' => 'bna', 'C01p39780' => 'bna', 'C01p48530' => 'bna', 'C01p50410' => 'bna', 'C02p17470' => 'bna', 'C02p23920' => 'bna', 'C02p25810' => 'bna', 'C02p29930' => 'bna', 'C02p37580' => 'bna', 'C02p39910' => 'bna', 'C02p41800' => 'bna', 'C02p42390' => 'bna', 'C02p49780' => 'bna', 'C02p49790' => 'bna', 'C02p57920' => 'bna', 'C03p03110' => 'bna', 'C03p03120' => 'bna', 'C03p25070' => 'bna', 'C03p36960' => 'bna', 'C03p37020' => 'bna', 'C03p48210' => 'bna', 'C03p64080' => 'bna', 'C03p68110' => 'bna', 'C03p68120' => 'bna', 'C03p68130' => 'bna', 'C03p68140' => 'bna', 'C03p68150' => 'bna', 'C03p68510' => 'bna', 'C03p70020' => 'bna', 'C04p02540' => 'bna', 'C04p12430' => 'bna', 'C04p20750' => 'bna', 'C04p22380' => 'bna', 'C04p22390' => 'bna', 'C04p48700' => 'bna', 'C04p60190' => 'bna', 'C05p11680' => 'bna', 'C05p15150' => 'bna', 'C05p15160' => 'bna', 'C05p17420' => 'bna', 'C05p19180' => 'bna', 'C05p19190' => 'bna', 'C05p22020' => 'bna', 'C05p29930' => 'bna', 'C05p34540' => 'bna', 'C05p34550' => 'bna', 'C05p38640' => 'bna', 'C05p58100' => 'bna', 'C06p08290' => 'bna', 'C06p12830' => 'bna', 'C06p15920' => 'bna', 'C06p20440' => 'bna', 'C06p20450' => 'bna', 'C06p20460' => 'bna', 'C06p24190' => 'bna', 'C06p24210' => 'bna', 'C06p26050' => 'bna', 'C06p35450' => 'bna', 'C07p01710' => 'bna', 'C07p10190' => 'bna', 'C07p10200' => 'bna', 'C07p20730' => 'bna', 'C07p23590' => 'bna', 'C07p30310' => 'bna', 'C07p30320' => 'bna', 'C07p55740' => 'bna', 'C08p11380' => 'bna', 'C09p07350' => 'bna', 'C09p20890' => 'bna', 'C09p23470' => 'bna', 'C09p37840' => 'bna', 'C09p37850' => 'bna', 'C09p55130' => 'bna', 'C09p65960' => 'bna', 'C09p65970' => 'bna', 'C09p74690' => 'bna', 'CARHR032540' => 'chi', 'CARHR033910' => 'chi', 'CARHR034730' => 'chi', 'CARHR037550' => 'chi', 'CARHR057390' => 'chi', 'CARHR104030' => 'chi', 'CARHR104690' => 'chi', 'CARHR107370' => 'chi', 'CARHR116100' => 'chi', 'CARHR116190' => 'chi', 'CARHR117470' => 'chi', 'CARHR117480' => 'chi', 'CARHR118760' => 'chi', 'CARHR150320' => 'chi', 'CARHR150330' => 'chi', 'CARHR150510' => 'chi', 'CARHR152970' => 'chi', 'CARHR153270' => 'chi', 'CARHR159290' => 'chi', 'CARHR159300' => 'chi', 'CARHR177560' => 'chi', 'CARHR183570' => 'chi', 'CARHR185190' => 'chi', 'CARHR187300' => 'chi', 'CARHR215510' => 'chi', 'CARHR217190' => 'chi', 'CARHR254680' => 'chi', 'CARHR258020' => 'chi', 'CARHR260230' => 'chi', 'CARHR273180' => 'chi', 'CARHR284370' => 'chi', 'CARHR286710' => 'chi', 'CARHR289190' => 'chi', 'Carub.0001s3503' => 'cru', 'Carub.0003s2796' => 'cru', 'Carub.0003s3058' => 'cru', 'Carub.0004s0683' => 'cru', 'Carub.0004s0691' => 'cru', 'Carub.0004s0714' => 'cru', 'Carub.0004s3021' => 'cru', 'Carub.0005s0341' => 'cru', 'Carub.0005s0342' => 'cru', 'Carub.0005s0915' => 'cru', 'Carub.0006s2619' => 'cru', 'Carub.0006s2635' => 'cru', 'Carub.0006s2659' => 'cru', 'Carub.0006s2660' => 'cru', 'Carub.0006s2680' => 'cru', 'Carub.0006s2832' => 'cru', 'Carub.0007s3063' => 'cru', 'Carub.0007s3065' => 'cru', 'Carub.0007s3691' => 'cru', 'Carub.0008s0635' => 'cru', 'Carub.0008s0705' => 'cru', 'Carub.0008s0707' => 'cru', 'Carub.0013s0001' => 'cru', 'Carub.0025s0007' => 'cru', 'Carub.0027s0004' => 'cru', 'Carub.0261s0001' => 'cru', 'Sp1g32400' => 'spa', 'Sp1g37620' => 'spa', 'Sp3g23850' => 'spa', 'Sp3g26120' => 'spa', 'Sp3g26210' => 'spa', 'Sp4g06320' => 'spa', 'Sp4g06330' => 'spa', 'Sp4g08350' => 'spa', 'Sp4g09070' => 'spa', 'Sp4g09180' => 'spa', 'Sp4g09630' => 'spa', 'Sp5g20050' => 'spa', 'Sp6g08240' => 'spa', 'Sp6g11640' => 'spa', 'Sp7g09910' => 'spa', 'Sp7g11040' => 'spa', 'SpUn0003_0010' => 'spa', 'SpUn0799_0010' => 'spa', 'SpUn1586_0010' => 'spa', 'THA.LOC104822205' => 'tha', 'Thhalv10000502m.g' => 'esa', 'Thhalv10001219m.g' => 'esa', 'Thhalv10002266m.g' => 'esa', 'Thhalv10002270m.g' => 'esa', 'Thhalv10002320m.g' => 'esa', 'Thhalv10002824m.g' => 'esa', 'Thhalv10002866m.g' => 'esa', 'Thhalv10002876m.g' => 'esa', 'Thhalv10003035m.g' => 'esa', 'Thhalv10003101m.g' => 'esa', 'Thhalv10003114m.g' => 'esa', 'Thhalv10003373m.g' => 'esa', 'Thhalv10005449m.g' => 'esa', 'Thhalv10005571m.g' => 'esa', 'Thhalv10009813m.g' => 'esa', 'Thhalv10011096m.g' => 'esa', 'Thhalv10015545m.g' => 'esa', 'Thhalv10015594m.g' => 'esa', 'Thhalv10015902m.g' => 'esa', 'Thhalv10015990m.g' => 'esa', 'Thhalv10017747m.g' => 'esa', 'Thhalv10019544m.g' => 'esa', 'Thhalv10019746m.g' => 'esa', 'Thhalv10019761m.g' => 'esa', 'Thhalv10019812m.g' => 'esa', 'Thhalv10021955m.g' => 'esa', 'Thhalv10021997m.g' => 'esa', 'Thhalv10022509m.g' => 'esa', 'Thhalv10023178m.g' => 'esa', 'Thhalv10023182m.g' => 'esa', 'Thhalv10023880m.g' => 'esa', 'Thhalv10023966m.g' => 'esa', 'Thhalv10023984m.g' => 'esa', 'Thhalv10027106m.g' => 'esa', 'Thhalv10027292m.g' => 'esa', 'Thhalv10028061m.g' => 'esa', 'Thhalv10028072m.g' => 'esa', 'Thhalv10029224m.g' => 'esa', 'Thhalv10029261m.g' => 'esa', 'Thhalv10029448m.g' => 'esa', 'Thhalv10029511m.g' => 'esa', 'Thhalv10029525m.g' => 'esa' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001285', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001285' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001285', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '487', 'num_species' => '12' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001285' ) ), 'genes' => array( 'A01p19020' => 'bna', 'A01p27250' => 'bna', 'A01p27760' => 'bna', 'A02p21060' => 'bna', 'A02p21070' => 'bna', 'A02p24110' => 'bna', 'A02p26970' => 'bna', 'A02p26990' => 'bna', 'A02p27370' => 'bna', 'A02p31600' => 'bna', 'A02p33590' => 'bna', 'A02p36790' => 'bna', 'A02p36800' => 'bna', 'A02p36810' => 'bna', 'A03p39280' => 'bna', 'A03p66480' => 'bna', 'A05p01380' => 'bna', 'A05p16830' => 'bna', 'A05p21700' => 'bna', 'A05p23270' => 'bna', 'A06p14650' => 'bna', 'A06p14660' => 'bna', 'A06p22000' => 'bna', 'A06p36190' => 'bna', 'A07p09780' => 'bna', 'A08p03050' => 'bna', 'A09p14520' => 'bna', 'A09p21670' => 'bna', 'A09p24270' => 'bna', 'A09p31280' => 'bna', 'A09p31290' => 'bna', 'A09p31300' => 'bna', 'A10p07020' => 'bna', 'A10p10700' => 'bna', 'A10p12120' => 'bna', 'A10p12130' => 'bna', 'A10p12140' => 'bna', 'Aa31csc1523G10' => 'aar', 'Aa31LG10G6700' => 'aar', 'Aa31LG11G8450' => 'aar', 'Aa31LG11G8460' => 'aar', 'Aa31LG11G8470' => 'aar', 'Aa31LG1G3610' => 'aar', 'Aa31LG1G6910' => 'aar', 'Aa31LG1G6920' => 'aar', 'Aa31LG2G16260' => 'aar', 'Aa31LG3G1850' => 'aar', 'Aa31LG5G20540' => 'aar', 'Aa31LG5G23320' => 'aar', 'Aa31LG6G12780' => 'aar', 'Aa31LG6G5080' => 'aar', 'Aa31LG6G7610' => 'aar', 'Aa31LG8G11960' => 'aar', 'Aa31LG8G11990' => 'aar', 'Aa31LG8G12130' => 'aar', 'Aa31sc112G40' => 'aar', 'Aa31sc112G50' => 'aar', 'Aa31sc119G70' => 'aar', 'Aa31sc119G80' => 'aar', 'Aa31sc20G160' => 'aar', 'Aa31sc251G20' => 'aar', 'Aa31sc251G30' => 'aar', 'Aa31sc478G30' => 'aar', 'Aa31sc478G40' => 'aar', 'Aa31sc49G40' => 'aar', 'Aa31sc86G90' => 'aar', 'AL1G47430' => 'aly', 'AL1G51180' => 'aly', 'AL1G60090' => 'aly', 'AL1G65960' => 'aly', 'AL3G30210' => 'aly', 'AL3G40680' => 'aly', 'AL3G42580' => 'aly', 'AL3G44690' => 'aly', 'AL3G44710' => 'aly', 'AL3G45080' => 'aly', 'AL3G45110' => 'aly', 'AL3G45900' => 'aly', 'AL4G10770' => 'aly', 'AL4G17640' => 'aly', 'AL4G18390' => 'aly', 'AL4G20190' => 'aly', 'AL5G16910' => 'aly', 'AL5G16920' => 'aly', 'AL6G39290' => 'aly', 'AL6G40760' => 'aly', 'AL6G41380' => 'aly', 'AL6G42160' => 'aly', 'AL6G43460' => 'aly', 'AL7G43700' => 'aly', 'AL7G43910' => 'aly', 'AL7G45060' => 'aly', 'AL8G19130' => 'aly', 'AL8G21960' => 'aly', 'AL8G24550' => 'aly', 'AT1G37020' => 'ath', 'AT1G42525' => 'ath', 'AT2G10260' => 'ath', 'AT3G30305' => 'ath', 'AT3G31910' => 'ath', 'AT4G08430' => 'ath', 'AT5G28235' => 'ath', 'AT5G28810' => 'ath', 'AT5G45570' => 'ath', 'BcaB01g00219' => 'bca', 'BcaB01g01002' => 'bca', 'BcaB01g01138' => 'bca', 'BcaB01g02952' => 'bca', 'BcaB01g02953' => 'bca', 'BcaB01g02964' => 'bca', 'BcaB02g07816' => 'bca', 'BcaB02g11091' => 'bca', 'BcaB02g11283' => 'bca', 'BcaB02g11542' => 'bca', 'BcaB02g11543' => 'bca', 'BcaB03g15494' => 'bca', 'BcaB03g15495' => 'bca', 'BcaB03g15497' => 'bca', 'BcaB03g15498' => 'bca', 'BcaB03g15573' => 'bca', 'BcaB03g15580' => 'bca', 'BcaB03g16174' => 'bca', 'BcaB03g16262' => 'bca', 'BcaB03g16401' => 'bca', 'BcaB03g16504' => 'bca', 'BcaB04g17409' => 'bca', 'BcaB04g17599' => 'bca', 'BcaB04g17928' => 'bca', 'BcaB05g23429' => 'bca', 'BcaB05g23430' => 'bca', 'BcaB05g23483' => 'bca', 'BcaB06g25750' => 'bca', 'BcaB06g26565' => 'bca', 'BcaB06g26759' => 'bca', 'BcaB06g26823' => 'bca', 'BcaB06g28698' => 'bca', 'BcaB07g32960' => 'bca', 'BcaB07g32961' => 'bca', 'BcaB07g32962' => 'bca', 'BcaB07g33409' => 'bca', 'BcaB07g33410' => 'bca', 'BcaB08g35036' => 'bca', 'BcaB08g35296' => 'bca', 'BcaB08g35301' => 'bca', 'BcaC01g00776' => 'bca', 'BcaC01g02097' => 'bca', 'BcaC01g02155' => 'bca', 'BcaC01g02156' => 'bca', 'BcaC01g02157' => 'bca', 'BcaC02g10464' => 'bca', 'BcaC02g10993' => 'bca', 'BcaC02g10994' => 'bca', 'BcaC02g10995' => 'bca', 'BcaC02g11078' => 'bca', 'BcaC02g12762' => 'bca', 'BcaC03g14913' => 'bca', 'BcaC03g15031' => 'bca', 'BcaC03g15380' => 'bca', 'BcaC03g16214' => 'bca', 'BcaC03g16251' => 'bca', 'BcaC03g16362' => 'bca', 'BcaC03g16409' => 'bca', 'BcaC03g17060' => 'bca', 'BcaC03g17494' => 'bca', 'BcaC03g17776' => 'bca', 'BcaC04g19281' => 'bca', 'BcaC04g20925' => 'bca', 'BcaC05g25851' => 'bca', 'BcaC05g25966' => 'bca', 'BcaC05g27108' => 'bca', 'BcaC05g27109' => 'bca', 'BcaC05g27489' => 'bca', 'BcaC05g27865' => 'bca', 'BcaC05g28112' => 'bca', 'BcaC05g29508' => 'bca', 'BcaC05g30530' => 'bca', 'BcaC06g30937' => 'bca', 'BcaC06g34326' => 'bca', 'BcaC06g35842' => 'bca', 'BcaC06g35872' => 'bca', 'BcaC06g36181' => 'bca', 'BcaC07g38661' => 'bca', 'BcaC07g41709' => 'bca', 'BcaC07g41747' => 'bca', 'BcaC08g43217' => 'bca', 'BcaC08g43241' => 'bca', 'BcaC08g43423' => 'bca', 'BcaC08g44187' => 'bca', 'BcaC08g44579' => 'bca', 'BcaC08g45763' => 'bca', 'BcaC09g49778' => 'bca', 'BcaC09g50656' => 'bca', 'BcaNung03065' => 'bca', 'BcaNung05688' => 'bca', 'BolC1t02405H' => 'bol', 'BolC1t02406H' => 'bol', 'BolC1t03243H' => 'bol', 'BolC1t03244H' => 'bol', 'BolC1t03470H' => 'bol', 'BolC2t07251H' => 'bol', 'BolC2t07252H' => 'bol', 'BolC2t07579H' => 'bol', 'BolC2t07861H' => 'bol', 'BolC2t07862H' => 'bol', 'BolC2t08652H' => 'bol', 'BolC2t10065H' => 'bol', 'BolC2t10459H' => 'bol', 'BolC2t11860H' => 'bol', 'BolC3t14897H' => 'bol', 'BolC3t14898H' => 'bol', 'BolC3t17402H' => 'bol', 'BolC3t18089H' => 'bol', 'BolC3t18090H' => 'bol', 'BolC3t19033H' => 'bol', 'BolC3t19034H' => 'bol', 'BolC3t19035H' => 'bol', 'BolC3t19036H' => 'bol', 'BolC4t21897H' => 'bol', 'BolC4t23605H' => 'bol', 'BolC5t29915H' => 'bol', 'BolC5t30618H' => 'bol', 'BolC5t30619H' => 'bol', 'BolC5t31726H' => 'bol', 'BolC5t31727H' => 'bol', 'BolC5t32186H' => 'bol', 'BolC5t32603H' => 'bol', 'BolC5t32604H' => 'bol', 'BolC6t35851H' => 'bol', 'BolC6t35910H' => 'bol', 'BolC6t36784H' => 'bol', 'BolC6t37227H' => 'bol', 'BolC6t38666H' => 'bol', 'BolC6t39975H' => 'bol', 'BolC7t41468H' => 'bol', 'BolC7t41469H' => 'bol', 'BolC7t42880H' => 'bol', 'BolC7t42881H' => 'bol', 'BolC8t49093H' => 'bol', 'BolC9t55675H' => 'bol', 'BolC9t56617H' => 'bol', 'BolC9t56619H' => 'bol', 'BolC9t57080H' => 'bol', 'BolC9t57594H' => 'bol', 'BolC9t57745H' => 'bol', 'BolC9t59419H' => 'bol', 'BolC9t59420H' => 'bol', 'BraA01t01846Z' => 'bra', 'BraA01t02157Z' => 'bra', 'BraA02t07710Z' => 'bra', 'BraA02t07713Z' => 'bra', 'BraA02t07714Z' => 'bra', 'BraA02t07765Z' => 'bra', 'BraA02t08162Z' => 'bra', 'BraA02t08380Z' => 'bra', 'BraA02t08671Z' => 'bra', 'BraA02t08672Z' => 'bra', 'BraA03t11415Z' => 'bra', 'BraA03t13037Z' => 'bra', 'BraA03t13038Z' => 'bra', 'BraA03t13079Z' => 'bra', 'BraA03t13383Z' => 'bra', 'BraA05t19209Z' => 'bra', 'BraA05t20256Z' => 'bra', 'BraA05t20257Z' => 'bra', 'BraA05t20713Z' => 'bra', 'BraA05t20714Z' => 'bra', 'BraA05t20715Z' => 'bra', 'BraA05t20822Z' => 'bra', 'BraA05t21191Z' => 'bra', 'BraA05t21432Z' => 'bra', 'BraA06t24592Z' => 'bra', 'BraA06t25593Z' => 'bra', 'BraA06t25594Z' => 'bra', 'BraA06t25595Z' => 'bra', 'BraA07t28518Z' => 'bra', 'BraA08t32912Z' => 'bra', 'BraA08t32913Z' => 'bra', 'BraA09t37769Z' => 'bra', 'BraA09t38468Z' => 'bra', 'BraA09t39171Z' => 'bra', 'BraA10t42948Z' => 'bra', 'BraSC41t46221Z' => 'bra', 'C01p14870' => 'bna', 'C01p17430' => 'bna', 'C01p24570' => 'bna', 'C01p30150' => 'bna', 'C01p33030' => 'bna', 'C01p33040' => 'bna', 'C01p33050' => 'bna', 'C01p35070' => 'bna', 'C01p39770' => 'bna', 'C01p39780' => 'bna', 'C01p48530' => 'bna', 'C01p50410' => 'bna', 'C02p17470' => 'bna', 'C02p23920' => 'bna', 'C02p25810' => 'bna', 'C02p29930' => 'bna', 'C02p37580' => 'bna', 'C02p39910' => 'bna', 'C02p41800' => 'bna', 'C02p42390' => 'bna', 'C02p49780' => 'bna', 'C02p49790' => 'bna', 'C02p57920' => 'bna', 'C03p03110' => 'bna', 'C03p03120' => 'bna', 'C03p25070' => 'bna', 'C03p36960' => 'bna', 'C03p37020' => 'bna', 'C03p48210' => 'bna', 'C03p64080' => 'bna', 'C03p68110' => 'bna', 'C03p68120' => 'bna', 'C03p68130' => 'bna', 'C03p68140' => 'bna', 'C03p68150' => 'bna', 'C03p68510' => 'bna', 'C03p70020' => 'bna', 'C04p02540' => 'bna', 'C04p12430' => 'bna', 'C04p20750' => 'bna', 'C04p22380' => 'bna', 'C04p22390' => 'bna', 'C04p48700' => 'bna', 'C04p60190' => 'bna', 'C05p11680' => 'bna', 'C05p15150' => 'bna', 'C05p15160' => 'bna', 'C05p17420' => 'bna', 'C05p19180' => 'bna', 'C05p19190' => 'bna', 'C05p22020' => 'bna', 'C05p29930' => 'bna', 'C05p34540' => 'bna', 'C05p34550' => 'bna', 'C05p38640' => 'bna', 'C05p58100' => 'bna', 'C06p08290' => 'bna', 'C06p12830' => 'bna', 'C06p15920' => 'bna', 'C06p20440' => 'bna', 'C06p20450' => 'bna', 'C06p20460' => 'bna', 'C06p24190' => 'bna', 'C06p24210' => 'bna', 'C06p26050' => 'bna', 'C06p35450' => 'bna', 'C07p01710' => 'bna', 'C07p10190' => 'bna', 'C07p10200' => 'bna', 'C07p20730' => 'bna', 'C07p23590' => 'bna', 'C07p30310' => 'bna', 'C07p30320' => 'bna', 'C07p55740' => 'bna', 'C08p11380' => 'bna', 'C09p07350' => 'bna', 'C09p20890' => 'bna', 'C09p23470' => 'bna', 'C09p37840' => 'bna', 'C09p37850' => 'bna', 'C09p55130' => 'bna', 'C09p65960' => 'bna', 'C09p65970' => 'bna', 'C09p74690' => 'bna', 'CARHR032540' => 'chi', 'CARHR033910' => 'chi', 'CARHR034730' => 'chi', 'CARHR037550' => 'chi', 'CARHR057390' => 'chi', 'CARHR104030' => 'chi', 'CARHR104690' => 'chi', 'CARHR107370' => 'chi', 'CARHR116100' => 'chi', 'CARHR116190' => 'chi', 'CARHR117470' => 'chi', 'CARHR117480' => 'chi', 'CARHR118760' => 'chi', 'CARHR150320' => 'chi', 'CARHR150330' => 'chi', 'CARHR150510' => 'chi', 'CARHR152970' => 'chi', 'CARHR153270' => 'chi', 'CARHR159290' => 'chi', 'CARHR159300' => 'chi', 'CARHR177560' => 'chi', 'CARHR183570' => 'chi', 'CARHR185190' => 'chi', 'CARHR187300' => 'chi', 'CARHR215510' => 'chi', 'CARHR217190' => 'chi', 'CARHR254680' => 'chi', 'CARHR258020' => 'chi', 'CARHR260230' => 'chi', 'CARHR273180' => 'chi', 'CARHR284370' => 'chi', 'CARHR286710' => 'chi', 'CARHR289190' => 'chi', 'Carub.0001s3503' => 'cru', 'Carub.0003s2796' => 'cru', 'Carub.0003s3058' => 'cru', 'Carub.0004s0683' => 'cru', 'Carub.0004s0691' => 'cru', 'Carub.0004s0714' => 'cru', 'Carub.0004s3021' => 'cru', 'Carub.0005s0341' => 'cru', 'Carub.0005s0342' => 'cru', 'Carub.0005s0915' => 'cru', 'Carub.0006s2619' => 'cru', 'Carub.0006s2635' => 'cru', 'Carub.0006s2659' => 'cru', 'Carub.0006s2660' => 'cru', 'Carub.0006s2680' => 'cru', 'Carub.0006s2832' => 'cru', 'Carub.0007s3063' => 'cru', 'Carub.0007s3065' => 'cru', 'Carub.0007s3691' => 'cru', 'Carub.0008s0635' => 'cru', 'Carub.0008s0705' => 'cru', 'Carub.0008s0707' => 'cru', 'Carub.0013s0001' => 'cru', 'Carub.0025s0007' => 'cru', 'Carub.0027s0004' => 'cru', 'Carub.0261s0001' => 'cru', 'Sp1g32400' => 'spa', 'Sp1g37620' => 'spa', 'Sp3g23850' => 'spa', 'Sp3g26120' => 'spa', 'Sp3g26210' => 'spa', 'Sp4g06320' => 'spa', 'Sp4g06330' => 'spa', 'Sp4g08350' => 'spa', 'Sp4g09070' => 'spa', 'Sp4g09180' => 'spa', 'Sp4g09630' => 'spa', 'Sp5g20050' => 'spa', 'Sp6g08240' => 'spa', 'Sp6g11640' => 'spa', 'Sp7g09910' => 'spa', 'Sp7g11040' => 'spa', 'SpUn0003_0010' => 'spa', 'SpUn0799_0010' => 'spa', 'SpUn1586_0010' => 'spa', 'THA.LOC104822205' => 'tha', 'Thhalv10000502m.g' => 'esa', 'Thhalv10001219m.g' => 'esa', 'Thhalv10002266m.g' => 'esa', 'Thhalv10002270m.g' => 'esa', 'Thhalv10002320m.g' => 'esa', 'Thhalv10002824m.g' => 'esa', 'Thhalv10002866m.g' => 'esa', 'Thhalv10002876m.g' => 'esa', 'Thhalv10003035m.g' => 'esa', 'Thhalv10003101m.g' => 'esa', 'Thhalv10003114m.g' => 'esa', 'Thhalv10003373m.g' => 'esa', 'Thhalv10005449m.g' => 'esa', 'Thhalv10005571m.g' => 'esa', 'Thhalv10009813m.g' => 'esa', 'Thhalv10011096m.g' => 'esa', 'Thhalv10015545m.g' => 'esa', 'Thhalv10015594m.g' => 'esa', 'Thhalv10015902m.g' => 'esa', 'Thhalv10015990m.g' => 'esa', 'Thhalv10017747m.g' => 'esa', 'Thhalv10019544m.g' => 'esa', 'Thhalv10019746m.g' => 'esa', 'Thhalv10019761m.g' => 'esa', 'Thhalv10019812m.g' => 'esa', 'Thhalv10021955m.g' => 'esa', 'Thhalv10021997m.g' => 'esa', 'Thhalv10022509m.g' => 'esa', 'Thhalv10023178m.g' => 'esa', 'Thhalv10023182m.g' => 'esa', 'Thhalv10023880m.g' => 'esa', 'Thhalv10023966m.g' => 'esa', 'Thhalv10023984m.g' => 'esa', 'Thhalv10027106m.g' => 'esa', 'Thhalv10027292m.g' => 'esa', 'Thhalv10028061m.g' => 'esa', 'Thhalv10028072m.g' => 'esa', 'Thhalv10029224m.g' => 'esa', 'Thhalv10029261m.g' => 'esa', 'Thhalv10029448m.g' => 'esa', 'Thhalv10029511m.g' => 'esa', 'Thhalv10029525m.g' => 'esa' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001285' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001285' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001285' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001285' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151