Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 9.1e-163 577.0 329 100.0
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 9.1e-163 577.0 329 100.0
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 9.1e-163 577.0 329 100.0
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 3.7e-140 501.9 316 91.5
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 3.2e-139 498.8 331 90.9
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 2.1e-135 486.1 317 90.9
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 3.4e-117 425.6 345 75.9
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 4.4e-117 425.2 346 75.4
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 4.1e-115 418.7 345 74.5
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.2e-114 417.2 343 77.6
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 2.5e-112 409.5 340 73.5
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 5.4e-107 391.7 321 74.8
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 1.5e-93 347.1 332 62.0
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 9.6e-88 327.8 315 67.3
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 2.8e-71 273.1 179 78.2
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 4.8e-71 272.3 174 79.3
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 4.8e-71 272.3 174 79.3
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 4.8e-71 272.3 176 78.4
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 6.3e-71 271.9 191 77.5
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 2.4e-70 270.0 174 79.3
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 4.1e-70 269.2 333 55.3
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 3.4e-69 266.2 174 75.3
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 4.5e-69 265.8 179 76.5
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 4.5e-69 265.8 176 78.4
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 1.3e-68 264.2 313 56.5
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.2e-68 263.5 188 72.9
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 3.8e-68 262.7 326 58.9
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.4e-67 260.8 188 72.3
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 1.9e-67 260.4 174 75.3
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 2.5e-67 260.0 174 75.9
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 7.2e-67 258.5 186 71.5
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 7.9e-66 255.0 317 55.2
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.8e-65 253.8 176 73.3
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 3.0e-65 253.1 171 76.0
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 3.9e-65 252.7 187 71.7
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 3.9e-65 252.7 172 74.4
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 3.9e-65 252.7 178 74.2
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 8.8e-65 251.5 187 70.1
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.5e-64 250.8 192 69.8
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 2.0e-64 250.4 185 72.4
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 2.6e-64 250.0 177 71.2
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 7.4e-64 248.4 177 71.2
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 7.4e-64 248.4 192 68.8
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 9.7e-64 248.1 177 70.6
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 1.7e-63 247.3 165 76.4
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 2.2e-63 246.9 174 70.7
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.2e-63 246.9 174 73.0
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 5.3e-62 242.3 183 68.3
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 9.1e-62 241.5 177 70.1
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 9.1e-62 241.5 316 54.1
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 1.2e-61 241.1 186 66.7
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.5e-61 240.7 189 67.2
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 2.0e-61 240.4 176 67.6
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 4.5e-61 239.2 166 75.3
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 1.3e-60 237.7 170 68.8
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.2e-60 236.9 174 70.7
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 3.8e-60 236.1 322 53.1
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 8.5e-60 235.0 187 64.7
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 8.5e-60 235.0 187 64.7
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 1.4e-59 234.2 175 66.9
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 1.4e-59 234.2 364 47.8
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 1.4e-59 234.2 161 76.4
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 7.2e-59 231.9 319 46.7
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.7e-58 229.9 180 66.7
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 8.0e-58 228.4 309 49.5
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.0e-57 228.0 172 70.9
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 2.3e-57 226.9 168 68.5
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 8.8e-57 224.9 317 46.7
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 1.1e-56 224.6 164 72.6
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 2.0e-56 223.8 170 69.4
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 3.3e-56 223.0 309 49.2
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 5.7e-56 222.2 188 63.3
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 7.4e-56 221.9 172 69.2
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 1.3e-55 221.1 168 69.0
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 1.7e-55 220.7 357 47.1
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 2.2e-55 220.3 188 65.4
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 3.7e-55 219.5 276 55.8
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 8.2e-55 218.4 168 68.5
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 1.1e-54 218.0 171 67.8
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 5.3e-54 215.7 159 69.8
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 3.5e-53 213.0 162 70.4
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 4.5e-53 212.6 316 46.2
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.7e-52 210.7 290 45.2
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.7e-52 210.7 176 61.9
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 2.2e-52 210.3 162 71.6
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 6.5e-52 208.8 167 66.5
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 6.5e-52 208.8 178 65.7
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 1.1e-51 208.0 175 63.4
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 1.1e-51 208.0 174 64.4
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.5e-51 207.6 167 65.9
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 1.5e-51 207.6 365 46.0
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 1.6e-50 204.1 127 79.5
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 4.7e-50 202.6 305 50.2
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 3.3e-48 196.4 134 74.6
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 6.3e-47 192.2 124 76.6
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 1.8e-46 190.7 168 60.7
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 9.1e-46 188.3 145 66.9
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 9.1e-46 188.3 145 66.9
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 2.2e-44 183.7 172 58.7
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 2.2e-44 183.7 162 59.9
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.5e-43 180.3 187 54.5
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 5.5e-43 179.1 168 57.7
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 7.2e-43 178.7 137 66.4
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 6.3e-39 165.6 124 68.5
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 1.7e-36 157.5 104 77.9
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 1.0e-33 148.3 115 67.8
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 1.0e-33 148.3 124 65.3
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 3.7e-31 139.8 97 70.1
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 4.3e-27 126.3 191 39.3
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 7.5e-24 115.5 167 40.1
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 3.7e-23 113.2 109 59.6
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 7.0e-22 109.0 64 84.4
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 5.0e-20 102.8 71 74.6
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 9.8e-16 88.6 105 50.5
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 7.8e-13 79.0 59 67.8
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 5.1e-12 76.3 73 58.9
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 7.3e-11 72.4 59 64.4
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.8e-10 70.5 40 82.5
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 6.2e-10 69.3 105 41.0
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 8.1e-10 68.9 49 73.5
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 1.1e-09 68.6 42 78.6
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 6.8e-09 65.9 199 32.7
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 8.9e-09 65.5 77 45.5
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 3.4e-08 63.5 45 68.9
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.3e-07 61.6 106 41.5
TPR.G8429 Trifolium pratense HOM05D006300 ORTHO05D007623 2.2e-07 60.8 44 65.9
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.1e-06 58.5 35 77.1


User provided reference genes

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