Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25566 Brassica carinata HOM05D005601 ORTHO05D007265 1.0e-37 159.5 75 100.0
A06p12420 Brassica napus HOM05D005601 ORTHO05D007265 7.9e-30 133.3 64 98.4
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 3.9e-29 131.0 64 96.9
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 1.3e-24 115.9 113 55.8
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 1.3e-24 115.9 113 55.8
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 1.3e-24 115.9 113 55.8
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 1.3e-24 115.9 113 55.8
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 1.3e-24 115.9 113 55.8
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 1.3e-24 115.9 113 55.8
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 2.7e-22 108.2 111 53.2
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 1.0e-21 106.3 113 50.4
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 1.4e-21 105.9 113 52.2
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 2.3e-21 105.1 113 51.3
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 4.4e-20 100.9 111 50.5
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 4.8e-19 97.4 102 52.9
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 1.8e-18 95.5 113 45.1
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 1.3e-16 89.4 102 48.0
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 7.0e-10 67.0 104 37.5
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 3.5e-09 64.7 105 38.1
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 3.5e-09 64.7 105 38.1
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 4.5e-09 64.3 105 37.1
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 5.9e-09 63.9 103 37.9
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 5.9e-09 63.9 103 36.9
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 7.7e-09 63.5 105 38.1
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 2.2e-08 62.0 105 37.1
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 2.9e-08 61.6 102 35.3
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 5.0e-08 60.8 101 35.6
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 5.0e-08 60.8 102 35.3
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 1.1e-07 59.7 97 38.1
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 1.5e-07 59.3 99 36.4
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.9e-07 58.9 103 34.0
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 2.5e-07 58.5 101 34.7
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 2.5e-07 58.5 101 34.7
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 3.2e-07 58.2 101 35.6
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 4.2e-07 57.8 92 37.0
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 9.4e-07 56.6 102 34.3
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 1.2e-06 56.2 98 32.7
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 2.1e-06 55.5 101 32.7
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 2.7e-06 55.1 101 34.7
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 2.7e-06 55.1 102 34.3
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 3.6e-06 54.7 97 32.0
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 3.6e-06 54.7 98 32.7
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 3.6e-06 54.7 108 33.3
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 4.7e-06 54.3 76 40.8


User provided reference genes

Program Settings