Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25057 Brassica carinata HOM05D006955 ORTHO05D008701 2.3e-104 382.5 227 100.0
BcaC05g25064 Brassica carinata HOM05D006955 ORTHO05D008701 2.3e-104 382.5 227 100.0
A06p08430 Brassica napus HOM05D006955 ORTHO05D008701 2.3e-104 382.5 227 99.6
BolC5t29739H Brassica oleracea HOM05D006955 ORTHO05D008701 2.3e-104 382.5 227 100.0
BraA06t24039Z Brassica rapa HOM05D006955 ORTHO05D008701 2.3e-104 382.5 227 99.6
C05p09970 Brassica napus HOM05D006955 ORTHO05D008701 2.5e-103 379.0 227 97.4
Sp1g11840 Schrenkiella parvula HOM05D006955 ORTHO05D008701 6.0e-97 357.8 227 82.8
Thhalv10008697m.g Eutrema salsugineum HOM05D006955 ORTHO05D008701 1.3e-96 356.7 227 87.7
CARHR013710 Cardamine hirsuta HOM05D006955 ORTHO05D008701 1.8e-93 346.3 227 86.3
AL1G25090 Arabidopsis lyrata HOM05D006955 ORTHO05D008701 3.1e-93 345.5 227 87.7
AT1G13330 Arabidopsis thaliana HOM05D006955 ORTHO05D008701 9.9e-92 340.5 227 86.8
BolC5t29750H Brassica oleracea HOM05D006955 ORTHO05D008701 1.9e-90 336.3 210 86.7
Aa31LG1G1480 Aethionema arabicum HOM05D006955 ORTHO05D008701 7.1e-90 334.3 225 86.7
THA.LOC104805251 Tarenaya hassleriana HOM05D006955 ORTHO05D008701 7.1e-90 334.3 227 79.3
Carub.0001s1306 Capsella rubella HOM05D006955 ORTHO05D008701 7.3e-87 324.3 227 85.0
Ah.02g127040 Amaranthus hybridus HOM05D006955 ORTHO05D008701 4.5e-84 315.1 227 73.6
TWI79G1443 Tripterygium wilfordii HOM05D006955 ORTHO05D008701 3.8e-83 312.0 227 68.3
TPR.G38250 Trifolium pratense HOM05D006955 ORTHO05D008701 2.4e-82 309.3 227 70.0
COL.COLO4_07900 Corchorus olitorius HOM05D006955 ORTHO05D008701 7.1e-82 307.8 227 72.2
Haze_17460 Corylus avellana HOM05D006955 ORTHO05D008701 2.1e-81 306.2 227 69.2
AUR62002894 Chenopodium quinoa HOM05D006955 ORTHO05D008701 3.5e-81 305.4 227 68.3
Gohir.D13G071200 Gossypium hirsutum HOM05D006955 ORTHO05D008701 3.5e-81 305.4 227 67.4
Gorai.013G081500 Gossypium raimondii HOM05D006955 ORTHO05D008701 3.5e-81 305.4 227 67.4
Ca_28012_v3 Cicer arietinum L. HOM05D006955 ORTHO05D008701 7.9e-81 304.3 227 68.7
Gohir.A13G053700 Gossypium hirsutum HOM05D006955 ORTHO05D008701 7.9e-81 304.3 227 67.0
RcHm_v2.0_Chr4g0435501 Rosa chinensis HOM05D006955 ORTHO05D008701 1.3e-80 303.5 225 67.1
Sc11g0003240 Simmondsia chinensis HOM05D006955 ORTHO05D008701 6.7e-80 301.2 227 66.1
Sc11g0003300 Simmondsia chinensis HOM05D006955 ORTHO05D008701 6.7e-80 301.2 227 66.1
Medtr5g055150 Medicago truncatula HOM05D006955 ORTHO05D008701 1.1e-79 300.4 227 69.2
Psat2g093000 Pisum sativum HOM05D006955 ORTHO05D008701 1.5e-79 300.1 227 68.3
Lj2g0004168 Lotus japonicus HOM05D006955 ORTHO05D008701 2.5e-79 299.3 227 67.4
Sed0012161 Sechium edule HOM05D006955 ORTHO05D008701 2.5e-79 299.3 227 66.1
Aqoxy3G00330 Aquilegia oxysepala HOM05D006955 ORTHO05D008701 3.3e-79 298.9 227 65.6
CSS0004457 Camellia sinensis var. sinensis HOM05D006955 ORTHO05D008701 7.4e-79 297.7 227 66.5
CsaV3_5G034170 Cucumis sativus L. HOM05D006955 ORTHO05D008701 9.6e-79 297.4 227 64.8
MELO3C012231.2 Cucumis melo HOM05D006955 ORTHO05D008701 1.6e-78 296.6 224 65.2
Actinidia14871 Actinidia chinensis HOM05D006955 ORTHO05D008701 2.1e-78 296.2 227 65.6
Phvul.002G082400 Phaseolus vulgaris HOM05D006955 ORTHO05D008701 2.8e-78 295.8 227 66.1
EL10Ac6g14443 Beta vulgaris HOM05D006955 ORTHO05D008701 3.7e-78 295.4 224 70.1
Glyma.08G260400 Glycine max HOM05D006955 ORTHO05D008701 3.7e-78 295.4 227 66.1
Lj3C1017T15 Lonicera japonica HOM05D006955 ORTHO05D008701 6.2e-78 294.7 227 65.2
Dinv21110 Davidia involucrata HOM05D006955 ORTHO05D008701 8.1e-78 294.3 227 65.6
Lalb_Chr17g0342031 Lupinus albus HOM05D006955 ORTHO05D008701 8.1e-78 294.3 227 66.1
Nn3g17799 Nelumbo nucifera HOM05D006955 ORTHO05D008701 8.1e-78 294.3 227 63.9
Potri.008G118800 Populus trichocarpa HOM05D006955 ORTHO05D008701 8.1e-78 294.3 227 64.3
Duzib251G0691 Durio zibethinus HOM05D006955 ORTHO05D008701 1.4e-77 293.5 227 74.9
Actinidia16638 Actinidia chinensis HOM05D006955 ORTHO05D008701 1.8e-77 293.1 227 65.6
Peaxi162Scf00382g00128 Petunia axillaris HOM05D006955 ORTHO05D008701 2.4e-77 292.7 227 65.2
Hund25084 Selenicereus undatus HOM05D006955 ORTHO05D008701 2.4e-77 292.7 227 67.4
CANSAT56G1672 Cannabis sativa HOM05D006955 ORTHO05D008701 1.2e-76 290.4 226 64.6
Prupe.1G308500 Prunus persica HOM05D006955 ORTHO05D008701 1.5e-76 290.0 225 64.0
Sabra08G0090200 Salix brachista HOM05D006955 ORTHO05D008701 1.5e-76 290.0 227 63.4
Manes.14G100100 Manihot esculenta HOM05D006955 ORTHO05D008701 2.6e-76 289.3 218 67.0
PSO017G5158 Papaver somniferum HOM05D006955 ORTHO05D008701 4.5e-76 288.5 227 63.9
arahy.Tifrunner.gnm1.ann1.0188KY Arachis hypogaea HOM05D006955 ORTHO05D008701 5.8e-76 288.1 225 65.8
arahy.Tifrunner.gnm1.ann1.5TE0FE Arachis hypogaea HOM05D006955 ORTHO05D008701 5.8e-76 288.1 225 65.8
PSO478G1614 Papaver somniferum HOM05D006955 ORTHO05D008701 5.8e-76 288.1 227 63.9
GSVIVG01011919001 Vitis vinifera HOM05D006955 ORTHO05D008701 7.6e-76 287.7 227 63.4
arahy.Tifrunner.gnm1.ann1.FS5FM4 Arachis hypogaea HOM05D006955 ORTHO05D008701 1.3e-75 287.0 225 65.3
MSTRG.13515 Avicennia marina HOM05D006955 ORTHO05D008701 2.9e-75 285.8 224 64.3
QL01p043991 Quercus lobata HOM05D006955 ORTHO05D008701 3.8e-75 285.4 225 73.8
Ciclev10032679m.g Citrus clementina HOM05D006955 ORTHO05D008701 4.9e-75 285.0 227 72.7
FAN07G1824 Fragaria x ananassa HOM05D006955 ORTHO05D008701 2.5e-74 282.7 221 63.8
FAN22G1329 Fragaria x ananassa HOM05D006955 ORTHO05D008701 3.2e-74 282.3 242 60.7
Cc11_g10340 Coffea canephora HOM05D006955 ORTHO05D008701 4.2e-74 282.0 225 63.1
Rhsim12G0082400 Rhododendron simsii HOM05D006955 ORTHO05D008701 4.2e-74 282.0 237 61.2
ECA233G4186 Erigeron canadensis HOM05D006955 ORTHO05D008701 7.1e-74 281.2 224 64.7
Migut.L01079 Erythranthe guttata HOM05D006955 ORTHO05D008701 9.3e-74 280.8 224 63.8
Glyma.01G083100 Glycine max HOM05D006955 ORTHO05D008701 9.3e-74 280.8 228 64.0
SGA_v2.0_scaffold124G33553 Striga asiatica HOM05D006955 ORTHO05D008701 9.3e-74 280.8 224 62.5
Cpa.g.sc1.190 Carica papaya HOM05D006955 ORTHO05D008701 2.1e-73 279.6 224 70.5
SalBow8G1483 Salvia bowleyana HOM05D006955 ORTHO05D008701 2.7e-73 279.3 227 63.0
MD16G1044800 Malus domestica HOM05D006955 ORTHO05D008701 3.5e-73 278.9 224 70.1
FAN12G2251 Fragaria x ananassa HOM05D006955 ORTHO05D008701 4.6e-73 278.5 221 68.3
TAR622G0049 Trochodendron aralioides HOM05D006955 ORTHO05D008701 4.6e-73 278.5 227 69.2
Eucgr.G02335 Eucalyptus grandis HOM05D006955 ORTHO05D008701 7.9e-73 277.7 227 62.1
AUR62035251 Chenopodium quinoa HOM05D006955 ORTHO05D008701 1.0e-72 277.3 227 70.5
FAN12G1265 Fragaria x ananassa HOM05D006955 ORTHO05D008701 1.0e-72 277.3 233 66.5
Nitab4.5_0004895g0100 Nicotiana tabacum HOM05D006955 ORTHO05D008701 1.3e-72 276.9 225 62.2
PGR119G2132 Punica granatum HOM05D006955 ORTHO05D008701 1.8e-72 276.6 227 62.6
vmacro01371 Vaccinium macrocarpon HOM05D006955 ORTHO05D008701 3.0e-72 275.8 267 56.2
Oeu033300.1 Olea europaea HOM05D006955 ORTHO05D008701 5.1e-72 275.0 260 56.2
MD13G1044000 Malus domestica HOM05D006955 ORTHO05D008701 6.7e-72 274.6 224 70.1
VMungo1215G2393 Vigna mungo HOM05D006955 ORTHO05D008701 6.7e-72 274.6 228 62.3
HanXRQChr08g0214231 Helianthus annuus HOM05D006955 ORTHO05D008701 1.1e-71 273.9 227 70.0
Atru.chr11.1296 Acer truncatum HOM05D006955 ORTHO05D008701 2.5e-71 272.7 227 61.2
ATR0665G168 Amborella trichopoda HOM05D006955 ORTHO05D008701 6.2e-70 268.1 225 58.7
DCAR_023669 Daucus carota HOM05D006955 ORTHO05D008701 6.2e-70 268.1 210 64.8
TAR629G1122 Trochodendron aralioides HOM05D006955 ORTHO05D008701 1.4e-69 266.9 250 54.4
ClCG05G022860 Citrullus lanatus HOM05D006955 ORTHO05D008701 7.1e-66 254.6 241 56.0
Lsat_1_v5_gn_8_38900 Lactuca sativa HOM05D006955 ORTHO05D008701 7.1e-66 254.6 207 63.8
Solyc05g009560.4 Solanum lycopersicum HOM05D006955 ORTHO05D008701 4.3e-63 245.4 222 67.1
Sopen05g005370 Solanum pennellii HOM05D006955 ORTHO05D008701 4.3e-63 245.4 222 67.1
Thecc.02G357700 Theobroma cacao HOM05D006955 ORTHO05D008701 5.7e-63 245.0 194 63.4
Nitab4.5_0003823g0050 Nicotiana tabacum HOM05D006955 ORTHO05D008701 6.3e-62 241.5 203 59.1
CiPaw.15G005500 Carya illinoinensis HOM05D006955 ORTHO05D008701 8.2e-62 241.1 195 69.2
CAN.G656.28 Capsicum annuum HOM05D006955 ORTHO05D008701 1.4e-61 240.4 222 66.2
HPP92_011092 Vanilla planifolia HOM05D006955 ORTHO05D008701 5.9e-60 235.0 214 54.2
Zm00001eb216450 Zea mays HOM05D006955 ORTHO05D008701 6.5e-59 231.5 222 58.1
SEGI_38068 Sequoiadendron giganteum HOM05D006955 ORTHO05D008701 1.1e-58 230.7 193 59.6
HPP92_011108 Vanilla planifolia HOM05D006955 ORTHO05D008701 1.9e-58 229.9 207 54.1
CDE05G2755 Ceratophyllum demersum HOM05D006955 ORTHO05D008701 7.9e-57 224.6 235 48.1
SHI33974 Sapria himalayana HOM05D006955 ORTHO05D008701 2.2e-54 216.5 213 52.1
Mapoly0015s0151 Marchantia polymorpha HOM05D006955 ORTHO05D008701 1.5e-52 210.3 221 48.4
SMO203G0092 Selaginella moellendorffii HOM05D006955 ORTHO05D008701 7.2e-50 201.4 207 48.8
CBR_g3130 Chara braunii HOM05D006955 ORTHO05D008701 8.2e-46 188.0 213 45.5
CAN.G706.23 Capsicum annuum HOM05D006955 ORTHO05D008701 1.8e-37 160.2 184 50.5
PGSC0003DMG402012965 Solanum tuberosum HOM05D006955 ORTHO05D008701 9.1e-37 157.9 139 56.8
Pp3c23_21510 Physcomitrium patens HOM05D006955 ORTHO05D008701 7.7e-36 154.8 199 42.2
CAN.G884.17 Capsicum annuum HOM05D000526 ORTHO05D000956 1.1e-34 151.0 190 47.9
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 7.2e-26 121.7 99 64.6
Potri.010G127101 Populus trichocarpa HOM05D006955 ORTHO05D008701 5.2e-24 115.5 155 45.8
unitig_27.g25247 Utricularia gibba HOM05D006955 ORTHO05D008701 4.4e-23 112.5 77 63.6
Cre06.g284400 Chlamydomonas reinhardtii HOM05D006955 ORTHO05D008701 1.1e-13 81.3 220 31.8
MCO07G460 Micromonas commoda HOM05D006955 ORTHO05D008701 2.3e-11 73.6 200 26.0
C05p10030 Brassica napus HOM05D006955 ORTHO05D008701 4.3e-10 69.3 35 94.3
Medtr5g055130 Medicago truncatula HOM05D002518 ORTHO05D002630 4.0e-08 62.8 107 44.9
PRCOL_00000208 Prasinoderma coloniale HOM05D006955 ORTHO05D008701 4.4e-07 59.3 230 26.1
Medtr4g007850 Medicago truncatula HOM05D003710 ORTHO05D258575 1.7e-06 57.4 95 42.1


User provided reference genes

Program Settings