Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24917 Brassica carinata HOM05D000732 ORTHO05D013253 7.3e-62 240.4 119 100.0
C04p39850 Brassica napus HOM05D000732 ORTHO05D013253 5.5e-25 117.9 70 82.9
C07p09680 Brassica napus HOM05D000732 ORTHO05D013253 1.8e-23 112.8 70 80.0
Thhalv10007309m.g Eutrema salsugineum HOM05D000732 ORTHO05D007225 1.1e-22 110.2 69 76.8
BolC7t41407H Brassica oleracea HOM05D000732 ORTHO05D013253 1.5e-22 109.8 70 77.1
A04p20940 Brassica napus HOM05D000732 ORTHO05D013253 4.3e-22 108.2 70 77.1
BcaB03g11954 Brassica carinata HOM05D000732 ORTHO05D007225 5.7e-22 107.8 70 74.3
A10p33080 Brassica napus HOM05D000732 ORTHO05D013253 7.4e-22 107.5 70 77.1
BcaC05g26291 Brassica carinata HOM05D000732 ORTHO05D007225 1.1e-20 103.6 71 71.8
BolC5t30996H Brassica oleracea HOM05D000732 ORTHO05D007225 1.1e-20 103.6 71 71.8
Carub.0001s2330 Capsella rubella HOM05D000732 ORTHO05D007225 1.8e-20 102.8 70 71.4
BcaC03g17270 Brassica carinata HOM05D000732 ORTHO05D013253 6.9e-20 100.9 70 74.3
AL1G37550 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 9.0e-20 100.5 70 71.4
AT1G23790 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 5.9e-19 97.8 68 72.1
CARHR024210 Cardamine hirsuta HOM05D000732 ORTHO05D007225 2.9e-18 95.5 69 69.6
BcaC07g39214 Brassica carinata HOM05D000732 ORTHO05D007225 8.5e-18 94.0 56 78.6
Aa31LG7G7670 Aethionema arabicum HOM05D000732 ORTHO05D007225 2.5e-17 92.4 70 67.1
BcaC02g09190 Brassica carinata HOM05D000732 ORTHO05D013253 5.5e-17 91.3 63 69.8
C08p22100 Brassica napus HOM05D000732 ORTHO05D007225 5.5e-17 91.3 55 78.2
BolC8t49855H Brassica oleracea HOM05D000732 ORTHO05D007225 5.5e-17 91.3 55 78.2
A09p41030 Brassica napus HOM05D000732 ORTHO05D007225 1.2e-16 90.1 56 75.0
BolC2t11300H Brassica oleracea HOM05D000732 ORTHO05D013253 2.1e-16 89.4 59 72.9
A08p28020 Brassica napus HOM05D000732 ORTHO05D007225 7.9e-16 87.4 55 74.5
BraA08t34732Z Brassica rapa HOM05D000732 ORTHO05D007225 7.9e-16 87.4 55 74.5
AL2G29650 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 3.0e-15 85.5 70 61.4
BraA09t39596Z Brassica rapa HOM05D000732 ORTHO05D007225 6.7e-15 84.3 56 69.6
C05p22970 Brassica napus HOM05D000732 ORTHO05D007225 1.5e-14 83.2 55 70.9
Sp5g25460 Schrenkiella parvula HOM05D000732 ORTHO05D007225 2.0e-14 82.8 70 60.0
Carub.0002s1703 Capsella rubella HOM05D000732 ORTHO05D007225 4.3e-14 81.6 70 58.6
arahy.Tifrunner.gnm1.ann1.S6CLIJ Arachis hypogaea HOM05D000732 ORTHO05D007225 7.4e-14 80.9 67 58.2
arahy.Tifrunner.gnm1.ann1.V0668Y Arachis hypogaea HOM05D000732 ORTHO05D007225 7.4e-14 80.9 67 58.2
THA.LOC104808945 Tarenaya hassleriana HOM05D000732 ORTHO05D007225 9.7e-14 80.5 70 60.0
Lalb_Chr05g0216901 Lupinus albus HOM05D000732 ORTHO05D007225 2.2e-13 79.3 67 56.7
AT1G70340 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 4.8e-13 78.2 70 58.6
ECA233G2480 Erigeron canadensis HOM05D000732 ORTHO05D007225 1.1e-12 77.0 67 55.2
QL08p001505 Quercus lobata HOM05D000732 ORTHO05D013253 1.1e-12 77.0 67 58.2
QL08p001512 Quercus lobata HOM05D000732 ORTHO05D007225 1.1e-12 77.0 67 58.2
MSTRG.7899 Avicennia marina HOM05D000732 ORTHO05D007225 1.8e-12 76.3 66 57.6
Oeu056733.2 Olea europaea HOM05D000732 ORTHO05D007225 1.8e-12 76.3 67 56.7
Duzib268G1676 Durio zibethinus HOM05D000732 ORTHO05D007225 2.4e-12 75.9 67 59.7
MD16G1092400 Malus domestica HOM05D000732 ORTHO05D007225 2.4e-12 75.9 68 57.4
Cpa.g.sc69.30 Carica papaya HOM05D000732 ORTHO05D007225 3.1e-12 75.5 67 58.2
Dinv15302 Davidia involucrata HOM05D000732 ORTHO05D007225 4.1e-12 75.1 67 58.2
CARHR063520 Cardamine hirsuta HOM05D000732 ORTHO05D007225 5.3e-12 74.7 70 55.7
Duzib248G1152 Durio zibethinus HOM05D000732 ORTHO05D007225 5.3e-12 74.7 67 58.2
Lj3C1052T10 Lonicera japonica HOM05D000732 ORTHO05D007225 5.3e-12 74.7 67 53.7
Sed0004489 Sechium edule HOM05D000732 ORTHO05D007225 6.9e-12 74.3 77 51.9
MD13G1091800 Malus domestica HOM05D000732 ORTHO05D007225 9.1e-12 73.9 68 55.9
COL.COLO4_36966 Corchorus olitorius HOM05D000732 ORTHO05D007225 1.5e-11 73.2 67 58.2
Prupe.1G254000 Prunus persica HOM05D000732 ORTHO05D007225 2.0e-11 72.8 68 57.4
Thecc.02G248500 Theobroma cacao HOM05D000732 ORTHO05D007225 2.0e-11 72.8 67 58.2
Sabra10G0027600 Salix brachista HOM05D000732 ORTHO05D007225 2.6e-11 72.4 72 55.6
Hund05994 Selenicereus undatus HOM05D000732 ORTHO05D007225 2.6e-11 72.4 67 53.7
Potri.010G038600 Populus trichocarpa HOM05D000732 ORTHO05D007225 3.4e-11 72.0 71 56.3
Manes.12G029000 Manihot esculenta HOM05D000732 ORTHO05D007225 4.5e-11 71.6 67 53.7
Actinidia15046 Actinidia chinensis HOM05D000732 ORTHO05D007225 5.9e-11 71.2 67 55.2
Ciclev10031068m.g Citrus clementina HOM05D000732 ORTHO05D007225 5.9e-11 71.2 67 55.2
RcHm_v2.0_Chr4g0443831 Rosa chinensis HOM05D000732 ORTHO05D007225 5.9e-11 71.2 70 57.1
Eucgr.B03344 Eucalyptus grandis HOM05D000732 ORTHO05D007225 7.7e-11 70.9 67 55.2
Peaxi162Scf00338g00223 Petunia axillaris HOM05D000732 ORTHO05D007225 7.7e-11 70.9 71 47.9
TWI36G1131 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 7.7e-11 70.9 67 55.2
BcaB01g00596 Brassica carinata HOM05D000732 ORTHO05D013253 1.3e-10 70.1 50 66.0
Potri.008G192300 Populus trichocarpa HOM05D000732 ORTHO05D007225 1.3e-10 70.1 67 53.7
Cc11_g14660 Coffea canephora HOM05D000732 ORTHO05D007225 1.7e-10 69.7 70 51.4
Glyma.01G031300 Glycine max HOM05D000732 ORTHO05D007225 1.7e-10 69.7 67 55.2
Glyma.02G034500 Glycine max HOM05D000732 ORTHO05D007225 1.7e-10 69.7 67 55.2
TAR371G0352 Trochodendron aralioides HOM05D000732 ORTHO05D007225 1.7e-10 69.7 67 53.7
VMungo1215G1082 Vigna mungo HOM05D000732 ORTHO05D007225 1.7e-10 69.7 67 55.2
A09p46000 Brassica napus HOM05D000732 ORTHO05D013253 2.2e-10 69.3 50 70.0
C07p09660 Brassica napus HOM05D000732 ORTHO05D013253 2.2e-10 69.3 52 67.3
FvH4_4g34410 Fragaria vesca HOM05D000732 ORTHO05D007225 2.9e-10 68.9 70 55.7
FAN12G2269 Fragaria x ananassa HOM05D000732 ORTHO05D007225 2.9e-10 68.9 70 55.7
Rhsim12G0120000 Rhododendron simsii HOM05D000732 ORTHO05D007225 2.9e-10 68.9 67 53.7
RhsimUnG0193300 Rhododendron simsii HOM05D000732 ORTHO05D007225 2.9e-10 68.9 67 53.7
vmacro16252 Vaccinium macrocarpon HOM05D000732 ORTHO05D007225 2.9e-10 68.9 67 55.2
TWI75G0496 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 3.8e-10 68.6 67 55.2
FAN22G0662 Fragaria x ananassa HOM05D000732 ORTHO05D007225 6.5e-10 67.8 70 54.3
CiPaw.05G150800 Carya illinoinensis HOM05D000732 ORTHO05D007225 8.5e-10 67.4 67 52.2
Haze_12177 Corylus avellana HOM05D000732 ORTHO05D007225 8.5e-10 67.4 67 53.7
FAN07G1798 Fragaria x ananassa HOM05D000732 ORTHO05D007225 8.5e-10 67.4 70 55.7
DCAR_031102 Daucus carota HOM05D000732 ORTHO05D007225 1.1e-09 67.0 68 51.5
FAN17G2219 Fragaria x ananassa HOM05D000732 ORTHO05D007225 1.1e-09 67.0 70 55.7
Medtr5g034370 Medicago truncatula HOM05D000732 ORTHO05D007225 1.1e-09 67.0 67 53.7
AUR62005377 Chenopodium quinoa HOM05D000732 ORTHO05D007225 1.4e-09 66.6 67 52.2
TPR.G13569 Trifolium pratense HOM05D000732 ORTHO05D007225 1.4e-09 66.6 67 52.2
Cfa009143 Carpinus fangiana HOM05D000732 ORTHO05D007225 1.9e-09 66.2 67 53.7
Ca_04598_v3 Cicer arietinum L. HOM05D000732 ORTHO05D007225 1.9e-09 66.2 67 53.7
MELO3C010661.2 Cucumis melo HOM05D000732 ORTHO05D007225 1.9e-09 66.2 71 46.5
CsaV3_2G024570 Cucumis sativus L. HOM05D000732 ORTHO05D007225 1.9e-09 66.2 71 46.5
SalBow2G2423 Salvia bowleyana HOM05D000732 ORTHO05D007225 1.9e-09 66.2 70 47.1
CSS0045437 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007225 2.5e-09 65.9 67 50.7
ClCG08G018070 Citrullus lanatus HOM05D000732 ORTHO05D007225 2.5e-09 65.9 53 58.5
PGR102G0434 Punica granatum HOM05D000732 ORTHO05D007225 2.5e-09 65.9 69 56.5
Ah.02g129920 Amaranthus hybridus HOM05D000732 ORTHO05D007225 3.2e-09 65.5 67 52.2
EL10Ac6g13672 Beta vulgaris HOM05D000732 ORTHO05D007225 3.2e-09 65.5 68 51.5
Lj2g0021682 Lotus japonicus HOM05D000732 ORTHO05D007225 4.2e-09 65.1 67 52.2
Nitab4.5_0000113g0290 Nicotiana tabacum HOM05D000732 ORTHO05D007225 4.2e-09 65.1 72 47.2
Nitab4.5_0002494g0010 Nicotiana tabacum HOM05D000732 ORTHO05D007225 4.2e-09 65.1 72 47.2
TAR680G0005 Trochodendron aralioides HOM05D000732 ORTHO05D007225 4.2e-09 65.1 67 50.7
TAR680G0006 Trochodendron aralioides HOM05D000732 ORTHO05D007225 4.2e-09 65.1 67 50.7
Dinv24859 Davidia involucrata HOM05D000732 ORTHO05D007225 5.5e-09 64.7 67 50.7
Hund25346 Selenicereus undatus HOM05D000732 ORTHO05D007225 5.5e-09 64.7 67 49.3
AUR62014040 Chenopodium quinoa HOM05D000732 ORTHO05D007225 7.2e-09 64.3 67 50.7
Sabra08G0145800 Salix brachista HOM05D000732 ORTHO05D007225 7.2e-09 64.3 68 51.5
TAR629G1031 Trochodendron aralioides HOM05D000732 ORTHO05D007225 7.2e-09 64.3 67 52.2
GSVIVG01020241001 Vitis vinifera HOM05D000732 ORTHO05D007225 9.4e-09 63.9 67 52.2
Aa31LG4G10600 Aethionema arabicum HOM05D000732 ORTHO05D007225 1.2e-08 63.5 69 49.3
Phvul.002G071800 Phaseolus vulgaris HOM05D000732 ORTHO05D007225 1.2e-08 63.5 67 53.7
Psat2g106200 Pisum sativum HOM05D000732 ORTHO05D007225 1.2e-08 63.5 67 52.2
Solyc05g005580.3 Solanum lycopersicum HOM05D000732 ORTHO05D007225 1.2e-08 63.5 72 47.2
Sopen05g001590 Solanum pennellii HOM05D000392 ORTHO05D000001 1.2e-08 63.5 72 47.2
CAN.G388.57 Capsicum annuum HOM05D000732 ORTHO05D007225 1.6e-08 63.2 74 44.6
Nn4g22799 Nelumbo nucifera HOM05D000732 ORTHO05D007225 2.7e-08 62.4 68 51.5
PSO832G2552 Papaver somniferum HOM05D000732 ORTHO05D007225 3.6e-08 62.0 67 49.3
PSO063G5642 Papaver somniferum HOM05D000732 ORTHO05D007225 4.7e-08 61.6 67 49.3
Hma1.2p1_0867F.1_g230180 Hydrangea macrophylla HOM05D000732 ORTHO05D007225 6.1e-08 61.2 69 50.7
Aqoxy3G01008 Aquilegia oxysepala HOM05D000732 ORTHO05D007225 7.9e-08 60.8 67 49.3
CANSAT01G2807 Cannabis sativa HOM05D000732 ORTHO05D007225 1.0e-07 60.5 72 47.2
Gohir.D02G162800 Gossypium hirsutum HOM05D000732 ORTHO05D007225 2.3e-07 59.3 67 52.2
Gorai.005G182800 Gossypium raimondii HOM05D000732 ORTHO05D007225 2.3e-07 59.3 67 52.2
Gohir.A03G140000 Gossypium hirsutum HOM05D000732 ORTHO05D007225 3.0e-07 58.9 67 50.7
Lsat_1_v5_gn_8_157120 Lactuca sativa HOM05D000732 ORTHO05D007225 3.0e-07 58.9 68 51.5
Sc11g0001190 Simmondsia chinensis HOM05D000732 ORTHO05D007225 5.1e-07 58.2 71 46.5
unitig_22.g6465 Utricularia gibba HOM05D000732 ORTHO05D007225 8.8e-07 57.4 62 45.2
unitig_25.g30566 Utricularia gibba HOM05D000732 ORTHO05D007225 8.8e-07 57.4 62 45.2
BcaC02g09354 Brassica carinata HOM05D000732 ORTHO05D013253 2.0e-06 56.2 53 58.5
Medtr5g034380 Medicago truncatula HOM05D000732 ORTHO05D013253 3.3e-06 55.5 44 59.1


User provided reference genes

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