Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24914 Brassica carinata HOM05D002502 ORTHO05D039600 1.0e-79 300.1 159 100.0
BcaC05g24913 Brassica carinata HOM05D002502 ORTHO05D003592 7.1e-36 154.5 153 62.1
C05p08410 Brassica napus HOM05D002502 ORTHO05D003592 1.7e-34 149.8 154 63.0
BraA06t23909Z Brassica rapa HOM05D002502 ORTHO05D003592 3.6e-32 142.1 83 90.4
BcaC05g24904 Brassica carinata HOM05D002502 ORTHO05D003592 6.2e-32 141.4 151 58.9
BolC5t29592H Brassica oleracea HOM05D002502 ORTHO05D003592 6.2e-32 141.4 151 58.9
Thhalv10009939m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 6.2e-32 141.4 108 75.0
A06p06930 Brassica napus HOM05D002502 ORTHO05D003592 2.6e-30 136.0 80 91.2
Carub.0001s0970 Capsella rubella HOM05D002502 ORTHO05D003592 1.3e-26 123.6 161 50.9
CARHR010410 Cardamine hirsuta HOM05D002502 ORTHO05D003592 7.3e-25 117.9 117 61.5
AT1G10300 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 5.2e-23 111.7 132 53.0
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 7.6e-22 107.8 132 52.3
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 1.7e-21 106.7 132 52.3
Medtr2g078050 Medicago truncatula HOM05D002502 ORTHO05D003592 1.9e-20 103.2 133 50.4
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 1.9e-20 103.2 133 50.4
AL1G21030 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 3.2e-20 102.4 131 51.9
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 3.2e-20 102.4 136 49.3
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 4.2e-20 102.1 136 50.0
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 7.1e-20 101.3 93 58.1
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 3.5e-19 99.0 156 44.2
unitig_749.g14333 Utricularia gibba HOM05D002502 ORTHO05D003592 3.5e-19 99.0 100 57.0
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 4.6e-19 98.6 93 58.1
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 7.8e-19 97.8 98 63.3
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 1.3e-18 97.1 101 58.4
vmacro19268 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 2.3e-18 96.3 108 56.5
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 5.1e-18 95.1 124 50.8
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea HOM05D002502 ORTHO05D003592 5.1e-18 95.1 124 50.8
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 6.6e-18 94.7 76 60.5
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 1.1e-17 94.0 125 44.8
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 1.1e-17 94.0 93 54.8
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 1.1e-17 94.0 124 51.6
vmacro20354 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 1.1e-17 94.0 108 55.6
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 1.5e-17 93.6 134 45.5
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 2.5e-17 92.8 68 69.1
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 2.5e-17 92.8 133 46.6
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 4.3e-17 92.0 62 74.2
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 5.6e-17 91.7 65 70.8
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 7.3e-17 91.3 96 60.4
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 7.3e-17 91.3 135 42.2
CDE04G3381 Ceratophyllum demersum HOM05D002502 ORTHO05D003592 1.3e-16 90.5 169 42.0
Lsat_1_v5_gn_8_160141 Lactuca sativa HOM05D002502 ORTHO05D003592 1.3e-16 90.5 65 70.8
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 2.1e-16 89.7 131 45.8
arahy.Tifrunner.gnm1.ann1.UDT6NA Arachis hypogaea HOM05D002502 ORTHO05D003592 2.1e-16 89.7 131 45.8
Nitab4.5_0000592g0070 Nicotiana tabacum HOM05D002502 ORTHO05D003592 2.1e-16 89.7 132 45.5
TAR374G0038 Trochodendron aralioides HOM05D002502 ORTHO05D039600 2.1e-16 89.7 98 59.2
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 2.8e-16 89.4 65 69.2
ClCG08G017240 Citrullus lanatus HOM05D002502 ORTHO05D003592 2.8e-16 89.4 68 66.2
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 2.8e-16 89.4 103 50.5
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 3.6e-16 89.0 68 67.6
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 3.6e-16 89.0 65 69.2
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 3.6e-16 89.0 65 69.2
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 3.6e-16 89.0 108 52.8
FAN02G3956 Fragaria x ananassa HOM05D002502 ORTHO05D003592 4.8e-16 88.6 102 54.9
CDE12G0187 Ceratophyllum demersum HOM05D002502 ORTHO05D003592 6.2e-16 88.2 143 44.1
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 6.2e-16 88.2 157 40.1
Sp1g03550 Schrenkiella parvula HOM05D002502 ORTHO05D003592 6.2e-16 88.2 83 61.4
Prupe.6G149400 Prunus persica HOM05D002502 ORTHO05D003592 8.1e-16 87.8 99 57.6
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 1.8e-15 86.7 157 40.1
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 2.4e-15 86.3 108 51.9
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 3.1e-15 85.9 62 69.4
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 3.1e-15 85.9 68 67.6
Aa31LG1G8620 Aethionema arabicum HOM05D002502 ORTHO05D003592 5.3e-15 85.1 53 77.4
BolC5t29072H Brassica oleracea HOM05D002502 ORTHO05D003592 5.3e-15 85.1 53 79.2
BraA10t42587Z Brassica rapa HOM05D002502 ORTHO05D003592 5.3e-15 85.1 53 79.2
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 9.0e-15 84.3 65 67.7
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 9.0e-15 84.3 71 64.8
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 1.2e-14 84.0 70 64.3
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 1.5e-14 83.6 54 75.9
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 1.5e-14 83.6 54 75.9
AL1G14420 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 2.0e-14 83.2 167 39.5
MSTRG.620 Avicennia marina HOM05D002502 ORTHO05D003592 2.0e-14 83.2 68 63.2
A10p03140 Brassica napus HOM05D002502 ORTHO05D003592 2.0e-14 83.2 53 77.4
C05p02910 Brassica napus HOM05D002502 ORTHO05D003592 2.0e-14 83.2 53 77.4
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 2.0e-14 83.2 54 75.9
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 2.0e-14 83.2 54 75.9
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 2.6e-14 82.8 93 50.5
Cpa.g.c38405.2 Carica papaya HOM05D002502 ORTHO05D003592 3.4e-14 82.4 59 72.9
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 4.4e-14 82.0 53 75.5
AT1G50920 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 4.4e-14 82.0 162 40.1
BcaB03g13475 Brassica carinata HOM05D002502 ORTHO05D003592 4.4e-14 82.0 53 75.5
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 4.4e-14 82.0 56 73.2
Thhalv10006811m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 4.4e-14 82.0 53 75.5
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 4.4e-14 82.0 68 61.8
SEGI_13678 Sequoiadendron giganteum HOM05D002502 ORTHO05D003592 4.4e-14 82.0 132 44.7
THA.LOC104799100 Tarenaya hassleriana HOM05D002502 ORTHO05D003592 5.8e-14 81.6 51 76.5
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 7.6e-14 81.3 156 39.1
Gorai.008G128300 Gossypium raimondii HOM05D002502 ORTHO05D003592 7.6e-14 81.3 123 45.5
Actinidia08181 Actinidia chinensis HOM05D002502 ORTHO05D003592 9.9e-14 80.9 53 73.6
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 9.9e-14 80.9 65 66.2
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 9.9e-14 80.9 54 72.2
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 9.9e-14 80.9 62 66.1
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 9.9e-14 80.9 55 70.9
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 1.3e-13 80.5 65 66.2
BcaC07g36887 Brassica carinata HOM05D002502 ORTHO05D003592 1.7e-13 80.1 53 73.6
A08p36740 Brassica napus HOM05D002502 ORTHO05D003592 1.7e-13 80.1 53 73.6
C08p01410 Brassica napus HOM05D002502 ORTHO05D003592 1.7e-13 80.1 53 73.6
BolC8t46950H Brassica oleracea HOM05D002502 ORTHO05D003592 1.7e-13 80.1 53 73.6
BraA08t35576Z Brassica rapa HOM05D002502 ORTHO05D003592 1.7e-13 80.1 53 73.6
CARHR004090 Cardamine hirsuta HOM05D002502 ORTHO05D003592 1.7e-13 80.1 162 38.9
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 1.7e-13 80.1 132 40.9
ATR0772G044 Amborella trichopoda HOM05D002502 ORTHO05D003592 2.2e-13 79.7 53 71.7
Carub.0001s0396 Capsella rubella HOM05D002502 ORTHO05D003592 2.2e-13 79.7 79 57.0
MBI17_g08352_MAGBIO Magnolia biondii HOM05D002502 ORTHO05D003592 2.2e-13 79.7 58 69.0
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 2.9e-13 79.3 133 42.9
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 2.9e-13 79.3 62 64.5
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 2.9e-13 79.3 53 73.6
unitig_26.g9281 Utricularia gibba HOM05D000407 ORTHO05D001717 2.9e-13 79.3 62 67.7
Cc00_g01510 Coffea canephora HOM05D002502 ORTHO05D003592 3.8e-13 79.0 56 69.6
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 3.8e-13 79.0 53 69.8
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 3.8e-13 79.0 53 69.8
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 3.8e-13 79.0 53 71.7
ATR0763G231 Amborella trichopoda HOM05D002502 ORTHO05D003592 4.9e-13 78.6 53 71.7
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 6.4e-13 78.2 53 71.7
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 6.4e-13 78.2 53 69.8
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 6.4e-13 78.2 53 69.8
RcHm_v2.0_Chr5g0051921 Rosa chinensis HOM05D002502 ORTHO05D003592 6.4e-13 78.2 73 60.3
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 6.4e-13 78.2 53 69.8
Cpa.g.sc84.61 Carica papaya HOM05D002502 ORTHO05D003592 8.4e-13 77.8 53 75.5
Sed0022998 Sechium edule HOM05D002502 ORTHO05D003592 8.4e-13 77.8 55 69.1
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 8.4e-13 77.8 82 57.3
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 1.1e-12 77.4 53 71.7
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 1.1e-12 77.4 54 70.4
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 1.4e-12 77.0 52 75.0
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 1.4e-12 77.0 53 73.6
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 1.4e-12 77.0 53 67.9
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.4e-12 77.0 53 67.9
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.4e-12 77.0 53 67.9
FAN21G3969 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.4e-12 77.0 53 67.9
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 1.9e-12 76.6 53 71.7
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 1.9e-12 76.6 53 71.7
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 1.9e-12 76.6 53 67.9
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 1.9e-12 76.6 54 66.7
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 2.4e-12 76.3 53 69.8
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 3.2e-12 75.9 55 67.3
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 3.2e-12 75.9 132 39.4
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 4.2e-12 75.5 53 69.8
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 4.2e-12 75.5 52 69.2
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 5.4e-12 75.1 132 39.4
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 5.4e-12 75.1 53 66.0
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 7.1e-12 74.7 53 69.8
Hund11875 Selenicereus undatus HOM05D002502 ORTHO05D003592 7.1e-12 74.7 53 67.9
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 7.1e-12 74.7 54 68.5
Gohir.D12G118600 Gossypium hirsutum HOM05D002502 ORTHO05D003592 9.3e-12 74.3 53 69.8
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 1.2e-11 73.9 54 64.8
HPP92_004879 Vanilla planifolia HOM05D002502 ORTHO05D003592 1.2e-11 73.9 143 37.8
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 1.6e-11 73.6 53 66.0
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 1.6e-11 73.6 52 67.3
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 1.6e-11 73.6 52 67.3
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 1.6e-11 73.6 52 67.3
Zm00001eb278540 Zea mays HOM05D002502 ORTHO05D003592 1.6e-11 73.6 53 66.0
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 2.1e-11 73.2 53 67.9
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 2.1e-11 73.2 54 64.8
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 2.7e-11 72.8 53 67.9
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 3.5e-11 72.4 52 67.3
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 3.5e-11 72.4 59 61.0
Os07g0110200 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 3.5e-11 72.4 52 65.4
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 4.6e-11 72.0 59 57.6
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 4.6e-11 72.0 59 57.6
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 4.6e-11 72.0 53 64.2
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 4.6e-11 72.0 69 55.1
AUR62015502 Chenopodium quinoa HOM05D002502 ORTHO05D003592 7.9e-11 71.2 53 66.0
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 1.0e-10 70.9 53 64.2
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.3e-10 70.5 51 66.7
FAN09G2849 Fragaria x ananassa HOM05D002502 ORTHO05D003592 3.0e-10 69.3 91 47.3
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 3.9e-10 68.9 51 66.7
Thecc.09G232800 Theobroma cacao HOM05D002502 ORTHO05D003592 3.9e-10 68.9 92 51.1
Os06g0195900 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 5.1e-10 68.6 52 61.5
Pp3c23_20710 Physcomitrium patens HOM05D002502 ORTHO05D003592 5.1e-10 68.6 77 48.1
Pp3c20_4830 Physcomitrium patens HOM05D002502 ORTHO05D003592 1.5e-09 67.0 127 33.9
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 1.6e-08 63.5 50 60.0
Mapoly0056s0118 Marchantia polymorpha HOM05D002502 ORTHO05D003592 2.8e-08 62.8 92 48.9
AagrBONN_evm.TU.Sc2ySwM_117.2548 Anthoceros agrestis HOM05D002502 ORTHO05D003592 9.0e-07 57.8 65 50.8
SMO147G0287 Selaginella moellendorffii HOM05D002502 ORTHO05D003592 1.2e-06 57.4 45 62.2
FAN14G2513 Fragaria x ananassa HOM05D002502 ORTHO05D003592 7.6e-06 54.7 94 39.4
CBR_g77869 Chara braunii HOM05D002502 ORTHO05D003592 9.9e-06 54.3 51 51.0


User provided reference genes

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