Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24902 Brassica carinata HOM05D000912 ORTHO05D008392 6.4e-91 337.4 172 100.0
C05p08430 Brassica napus HOM05D000912 ORTHO05D008392 1.2e-78 296.6 156 96.8
BolC5t29594H Brassica oleracea HOM05D000912 ORTHO05D008392 1.2e-78 296.6 156 96.8
A06p12690 Brassica napus HOM05D000912 ORTHO05D008392 1.6e-70 269.6 166 86.1
Sp1g14870 Schrenkiella parvula HOM05D000912 ORTHO05D008392 2.1e-70 269.2 166 85.5
C05p14990 Brassica napus HOM05D000912 ORTHO05D008392 8.1e-70 267.3 166 85.5
Thhalv10007626m.g Eutrema salsugineum HOM05D000912 ORTHO05D008392 8.1e-70 267.3 166 84.9
BcaC05g25533 Brassica carinata HOM05D000912 ORTHO05D008392 1.1e-69 266.9 166 85.5
BolC5t30214H Brassica oleracea HOM05D000912 ORTHO05D008392 1.1e-69 266.9 166 85.5
BraA06t24429Z Brassica rapa HOM05D000912 ORTHO05D008392 1.1e-69 266.9 166 85.5
CARHR017180 Cardamine hirsuta HOM05D000912 ORTHO05D008392 2.6e-68 262.3 166 83.1
AL1G28890 Arabidopsis lyrata HOM05D000912 ORTHO05D008392 3.4e-68 261.9 166 83.1
AT1G16720 Arabidopsis thaliana HOM05D000912 ORTHO05D008392 5.8e-68 261.2 166 82.5
Aa31LG7G1180 Aethionema arabicum HOM05D000912 ORTHO05D008392 9.9e-68 260.4 166 83.1
Carub.0001s1646 Capsella rubella HOM05D000912 ORTHO05D008392 1.7e-67 259.6 166 81.9
THA.LOC104813622 Tarenaya hassleriana HOM05D000912 ORTHO05D008392 1.0e-64 250.4 166 78.3
Psat7g264640 Pisum sativum HOM05D000912 ORTHO05D008392 1.4e-61 240.0 177 71.2
Aqoxy7G02558 Aquilegia oxysepala HOM05D000912 ORTHO05D008392 6.9e-61 237.7 166 72.3
COL.COLO4_26806 Corchorus olitorius HOM05D000912 ORTHO05D008392 6.9e-61 237.7 177 72.3
arahy.Tifrunner.gnm1.ann1.1L678P Arachis hypogaea HOM05D000912 ORTHO05D008392 2.0e-60 236.1 177 71.2
arahy.Tifrunner.gnm1.ann1.400PFG Arachis hypogaea HOM05D000912 ORTHO05D008392 2.0e-60 236.1 177 71.2
Cfa002159 Carpinus fangiana HOM05D000912 ORTHO05D008392 2.6e-60 235.7 177 70.1
CiPaw.01G092100 Carya illinoinensis HOM05D000912 ORTHO05D008392 3.4e-60 235.3 166 73.5
ClCG05G010460 Citrullus lanatus HOM05D000912 ORTHO05D008392 4.4e-60 235.0 177 69.5
Gohir.D05G117700 Gossypium hirsutum HOM05D000912 ORTHO05D008392 4.4e-60 235.0 177 71.8
Gorai.009G121600 Gossypium raimondii HOM05D000912 ORTHO05D008392 4.4e-60 235.0 177 71.8
Haze_16247 Corylus avellana HOM05D000912 ORTHO05D008392 5.8e-60 234.6 177 69.5
DCAR_028447 Daucus carota HOM05D000912 ORTHO05D008392 7.6e-60 234.2 166 72.3
Oeu007970.1 Olea europaea HOM05D000912 ORTHO05D008392 7.6e-60 234.2 177 71.2
Dinv37770 Davidia involucrata HOM05D000912 ORTHO05D008392 9.9e-60 233.8 177 70.6
MELO3C019564.2 Cucumis melo HOM05D000912 ORTHO05D008392 1.3e-59 233.4 177 68.9
SalBow5G0605 Salvia bowleyana HOM05D000912 ORTHO05D008392 1.3e-59 233.4 166 72.3
SalBow5G2613 Salvia bowleyana HOM05D000912 ORTHO05D008392 1.3e-59 233.4 166 72.3
CsaV3_3G018030 Cucumis sativus L. HOM05D000912 ORTHO05D008392 1.7e-59 233.0 177 68.9
Nn8g41283 Nelumbo nucifera HOM05D000912 ORTHO05D008392 1.7e-59 233.0 177 69.5
TAR626G1580 Trochodendron aralioides HOM05D000912 ORTHO05D008392 1.7e-59 233.0 177 68.9
MBI16_g40724_MAGBIO Magnolia biondii HOM05D000912 ORTHO05D008392 2.2e-59 232.6 177 68.9
TPR.G38709 Trifolium pratense HOM05D000912 ORTHO05D008392 2.2e-59 232.6 177 70.1
CAN.G68.13 Capsicum annuum HOM05D000912 ORTHO05D008392 2.9e-59 232.3 177 69.5
Sopen08g006330 Solanum pennellii HOM05D000912 ORTHO05D008392 3.8e-59 231.9 177 69.5
PGSC0003DMG400007658 Solanum tuberosum HOM05D000912 ORTHO05D008392 3.8e-59 231.9 177 69.5
MSTRG.16592 Avicennia marina HOM05D000912 ORTHO05D008392 4.9e-59 231.5 177 70.6
Cpa.g.sc4293.2 Carica papaya HOM05D000912 ORTHO05D008392 4.9e-59 231.5 177 70.1
Duzib235G1169 Durio zibethinus HOM05D000912 ORTHO05D008392 4.9e-59 231.5 177 69.5
Gohir.A05G116800 Gossypium hirsutum HOM05D000912 ORTHO05D008392 4.9e-59 231.5 177 71.2
Nitab4.5_0000348g0140 Nicotiana tabacum HOM05D000912 ORTHO05D008392 4.9e-59 231.5 177 70.1
Lj9A544G34 Lonicera japonica HOM05D000912 ORTHO05D008392 8.4e-59 230.7 177 70.1
unitig_26.g9061 Utricularia gibba HOM05D000912 ORTHO05D008392 8.4e-59 230.7 167 72.5
Peaxi162Scf01205g00156 Petunia axillaris HOM05D000912 ORTHO05D008392 1.1e-58 230.3 177 69.5
Actinidia21901 Actinidia chinensis HOM05D000912 ORTHO05D008392 1.4e-58 229.9 177 70.1
Manes.06G180101 Manihot esculenta HOM05D000912 ORTHO05D008392 1.9e-58 229.6 177 70.1
Potri.014G000400 Populus trichocarpa HOM05D000912 ORTHO05D008392 1.9e-58 229.6 166 73.5
Sed0004063 Sechium edule HOM05D000912 ORTHO05D008392 1.9e-58 229.6 177 68.4
SGA_v2.0_scaffold14G07132 Striga asiatica HOM05D000912 ORTHO05D008392 1.9e-58 229.6 166 73.5
CDE05G1860 Ceratophyllum demersum HOM05D000912 ORTHO05D008392 2.4e-58 229.2 177 68.4
VMungo0331G0828 Vigna mungo HOM05D000912 ORTHO05D008392 3.2e-58 228.8 177 69.5
Lsat_1_v5_gn_4_106121 Lactuca sativa HOM05D000912 ORTHO05D008392 4.2e-58 228.4 177 68.4
Sabra14G0003000 Salix brachista HOM05D000912 ORTHO05D008392 4.2e-58 228.4 166 72.9
Medtr4g005070 Medicago truncatula HOM05D000912 ORTHO05D008392 7.1e-58 227.6 177 69.5
Phvul.010G165800 Phaseolus vulgaris HOM05D000912 ORTHO05D008392 7.1e-58 227.6 177 68.9
Thecc.06G049200 Theobroma cacao HOM05D000912 ORTHO05D008392 7.1e-58 227.6 177 68.9
GSVIVG01029443001 Vitis vinifera HOM05D000912 ORTHO05D008392 7.1e-58 227.6 177 68.4
AUR62001304 Chenopodium quinoa HOM05D000912 ORTHO05D008392 9.3e-58 227.3 166 72.9
Hma1.2p1_0073F.1_g038580 Hydrangea macrophylla HOM05D000912 ORTHO05D008392 9.3e-58 227.3 177 67.2
Lalb_Chr04g0264781 Lupinus albus HOM05D000912 ORTHO05D008392 9.3e-58 227.3 177 68.4
Atru.chr3.4083 Acer truncatum HOM05D000912 ORTHO05D001086 1.2e-57 226.9 177 68.4
Cc11_g00030 Coffea canephora HOM05D000912 ORTHO05D008392 1.2e-57 226.9 175 69.1
PSO063G4559 Papaver somniferum HOM05D000912 ORTHO05D008392 1.2e-57 226.9 177 66.7
PSO170G5414 Papaver somniferum HOM05D000912 ORTHO05D008392 1.2e-57 226.9 177 66.7
MD09G1169900 Malus domestica HOM05D000912 ORTHO05D008392 2.1e-57 226.1 177 68.4
Ciclev10028057m.g Citrus clementina HOM05D000912 ORTHO05D008392 2.7e-57 225.7 177 68.4
QL05p085123 Quercus lobata HOM05D000912 ORTHO05D008392 2.7e-57 225.7 177 67.2
TWI75G1320 Tripterygium wilfordii HOM05D000912 ORTHO05D008392 2.7e-57 225.7 177 67.8
Lj3g0002366 Lotus japonicus HOM05D000912 ORTHO05D008392 3.5e-57 225.3 177 68.4
RcHm_v2.0_Chr2g0148341 Rosa chinensis HOM05D000912 ORTHO05D008392 3.5e-57 225.3 177 68.4
AUR62025686 Chenopodium quinoa HOM05D000912 ORTHO05D008392 4.6e-57 224.9 166 72.3
FvH4_6g36340 Fragaria vesca HOM05D000912 ORTHO05D008392 4.6e-57 224.9 177 67.8
FAN09G3798 Fragaria x ananassa HOM05D000912 ORTHO05D001232 4.6e-57 224.9 177 67.8
Glyma.07G000500 Glycine max HOM05D000912 ORTHO05D008392 4.6e-57 224.9 177 68.9
Glyma.08G226600 Glycine max HOM05D000912 ORTHO05D008392 4.6e-57 224.9 177 68.4
CANSAT01G2443 Cannabis sativa HOM05D000912 ORTHO05D008392 1.0e-56 223.8 177 67.2
Migut.B00598 Erythranthe guttata HOM05D000912 ORTHO05D008392 1.0e-56 223.8 178 68.0
Potri.007G003500 Populus trichocarpa HOM05D000912 ORTHO05D008392 1.0e-56 223.8 177 67.8
FAN05G3420 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.3e-56 223.4 177 67.2
Nitab4.5_0001070g0120 Nicotiana tabacum HOM05D000912 ORTHO05D008392 3.0e-56 222.2 189 65.6
HanXRQChr09g0277451 Helianthus annuus HOM05D000912 ORTHO05D008392 5.1e-56 221.5 177 68.4
ATR0626G080 Amborella trichopoda HOM05D000912 ORTHO05D008392 6.6e-56 221.1 164 70.7
Eucgr.F04061 Eucalyptus grandis HOM05D000912 ORTHO05D008392 6.6e-56 221.1 177 67.2
Prupe.3G028100 Prunus persica HOM05D000912 ORTHO05D008392 8.7e-56 220.7 177 65.5
ECA229G0002 Erigeron canadensis HOM05D000912 ORTHO05D008392 2.5e-55 219.2 177 66.1
ECA232G1388 Erigeron canadensis HOM05D000912 ORTHO05D008392 2.5e-55 219.2 177 66.1
ECA233G4728 Erigeron canadensis HOM05D000912 ORTHO05D008392 2.5e-55 219.2 177 66.1
EL10Ac7g18104 Beta vulgaris HOM05D000912 ORTHO05D008392 9.6e-55 217.2 166 69.3
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 1.6e-54 216.5 177 63.3
HPP92_015272 Vanilla planifolia HOM05D000912 ORTHO05D008392 3.6e-54 215.3 177 65.0
Hund18549 Selenicereus undatus HOM05D000912 ORTHO05D008392 1.4e-53 213.4 166 68.7
Ca_03787_v3 Cicer arietinum L. HOM05D000912 ORTHO05D008392 2.0e-52 209.5 177 65.5
SEGI_09830 Sequoiadendron giganteum HOM05D000912 ORTHO05D008392 3.4e-52 208.8 166 66.3
Os06g0704700 Oryza sativa ssp. japonica HOM05D000912 ORTHO05D008392 8.4e-51 204.1 166 65.1
vmacro18721 Vaccinium macrocarpon HOM05D000912 ORTHO05D008392 4.2e-50 201.8 195 59.0
Zm00001eb227320 Zea mays HOM05D000912 ORTHO05D008392 2.1e-49 199.5 177 60.5
Os02g0137700 Oryza sativa ssp. japonica HOM05D000912 ORTHO05D008392 4.6e-49 198.4 177 61.0
FAN14G0321 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.3e-46 190.3 177 60.5
FAN14G4043 Fragaria x ananassa HOM05D000912 ORTHO05D001232 1.3e-46 190.3 177 60.5
Pp3c25_2890 Physcomitrium patens HOM05D000912 ORTHO05D008392 5.3e-45 184.9 173 56.6
AagrBONN_evm.TU.Sc2ySwM_228.4434 Anthoceros agrestis HOM05D000912 ORTHO05D008392 9.9e-44 180.6 175 56.6
Pp3c16_11160 Physcomitrium patens HOM05D000912 ORTHO05D008392 1.1e-42 177.2 169 55.6
Mapoly0022s0049 Marchantia polymorpha HOM05D000912 ORTHO05D008392 1.9e-42 176.4 169 56.8
CSS0042059 Camellia sinensis var. sinensis HOM05D000912 ORTHO05D008392 6.9e-37 157.9 221 47.1
FAN02G2903 Fragaria x ananassa HOM05D000912 ORTHO05D001232 2.0e-36 156.4 123 68.3
CSS0011648 Camellia sinensis var. sinensis HOM05D000912 ORTHO05D008392 3.4e-36 155.6 221 46.6
Rhsim08G0252400 Rhododendron simsii HOM05D000912 ORTHO05D008392 7.6e-36 154.5 124 66.9
Rhsim08G0252600 Rhododendron simsii HOM05D000912 ORTHO05D008392 7.6e-36 154.5 124 66.9
CBR_g46441 Chara braunii HOM05D000912 ORTHO05D008392 1.0e-32 144.1 170 47.1
SMO337G0061 Selaginella moellendorffii HOM05D000912 ORTHO05D008392 8.2e-30 134.4 170 45.9
arahy.Tifrunner.gnm1.ann1.A2QKHF Arachis hypogaea HOM05D000912 ORTHO05D001221 2.7e-25 119.4 76 78.9
MD07G1024000 Malus domestica HOM05D000912 ORTHO05D008392 5.0e-19 98.6 92 58.7
MD07G1024200 Malus domestica HOM05D000912 ORTHO05D008392 2.2e-11 73.2 52 69.2
Rhsim08G0252500 Rhododendron simsii HOM05D000912 ORTHO05D008392 1.1e-10 70.9 44 72.7
MD07G1017500 Malus domestica HOM05D000912 ORTHO05D008392 4.2e-10 68.9 46 71.7
Thecc.10G140900 Theobroma cacao HOM05D000912 ORTHO05D008392 3.0e-08 62.8 48 64.6
MCO08G214 Micromonas commoda HOM05D000912 ORTHO05D008392 2.0e-07 60.1 168 31.5
SMO119G0328 Selaginella moellendorffii HOM05D000912 ORTHO05D374890 7.4e-07 58.2 132 34.1
arahy.Tifrunner.gnm1.ann1.T8IHE2 Arachis hypogaea HOM05D000795 ORTHO05D001221 8.2e-06 54.7 32 81.2


User provided reference genes

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