Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 1.3e-97 359.8 182 100.0
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 4.8e-97 357.8 182 98.9
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 4.8e-97 357.8 182 98.9
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 1.4e-91 339.7 182 95.1
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 1.4e-91 339.7 182 95.1
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 1.7e-89 332.8 184 92.9
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 1.4e-80 303.1 191 82.7
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 9.4e-77 290.4 183 83.1
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 2.3e-75 285.8 190 77.4
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 3.0e-75 285.4 189 77.8
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 1.7e-73 279.6 190 78.9
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 7.7e-71 270.8 167 83.2
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 3.2e-69 265.4 191 72.3
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 1.5e-58 229.9 167 70.1
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.3e-54 216.1 188 61.7
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 1.5e-53 213.4 178 61.2
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 2.5e-53 212.6 180 59.4
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 5.6e-53 211.5 129 76.0
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 7.3e-53 211.1 169 60.9
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 7.3e-53 211.1 188 60.6
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 1.2e-52 210.3 188 58.5
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 1.6e-52 209.9 184 59.8
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 1.6e-52 209.9 150 67.3
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 1.6e-52 209.9 152 67.8
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 2.8e-52 209.1 170 60.6
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 4.7e-52 208.4 191 58.6
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 8.0e-52 207.6 113 79.6
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 8.0e-52 207.6 119 77.3
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 8.0e-52 207.6 166 63.3
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.0e-51 207.2 122 77.9
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.3e-51 206.1 183 60.1
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 6.8e-51 204.5 130 72.3
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 6.8e-51 204.5 157 65.0
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 1.2e-50 203.8 151 66.9
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 1.2e-50 203.8 120 75.0
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 1.5e-50 203.4 149 66.4
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 1.5e-50 203.4 149 66.4
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 3.4e-50 202.2 172 59.9
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 3.4e-50 202.2 128 72.7
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 4.4e-50 201.8 109 81.7
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 5.8e-50 201.4 125 73.6
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 7.5e-50 201.1 168 61.3
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 7.5e-50 201.1 151 66.2
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 7.5e-50 201.1 150 66.0
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 9.8e-50 200.7 163 62.6
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 9.8e-50 200.7 151 66.2
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 1.3e-49 200.3 162 62.3
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 1.7e-49 199.9 151 64.9
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 1.7e-49 199.9 185 54.1
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 2.2e-49 199.5 133 69.2
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 2.9e-49 199.1 134 69.4
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 2.9e-49 199.1 123 71.5
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 4.9e-49 198.4 158 60.1
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 4.9e-49 198.4 175 58.9
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 8.3e-49 197.6 175 58.3
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 3.2e-48 195.7 110 79.1
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 5.4e-48 194.9 178 56.2
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 5.4e-48 194.9 178 57.9
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 5.4e-48 194.9 179 57.5
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 9.2e-48 194.1 163 60.1
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 9.2e-48 194.1 183 56.3
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.2e-47 193.7 162 59.3
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 1.6e-47 193.4 178 57.9
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 2.7e-47 192.6 167 56.3
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 4.6e-47 191.8 164 61.0
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 1.3e-46 190.3 138 65.2
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 1.7e-46 189.9 179 54.2
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 1.7e-46 189.9 109 76.1
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 2.3e-46 189.5 167 57.5
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 2.3e-46 189.5 179 57.5
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 3.9e-46 188.7 171 57.9
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 5.0e-46 188.3 163 57.7
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 5.0e-46 188.3 178 53.4
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 6.6e-46 188.0 140 63.6
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 6.6e-46 188.0 176 55.1
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.6e-46 188.0 144 65.3
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 8.6e-46 187.6 128 69.5
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 8.6e-46 187.6 113 71.7
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.1e-45 187.2 111 72.1
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 1.1e-45 187.2 128 66.4
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 1.1e-45 187.2 123 68.3
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.5e-45 186.8 185 54.6
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 1.9e-45 186.4 110 74.5
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.9e-45 186.4 111 72.1
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 1.9e-45 186.4 166 56.6
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 7.3e-45 184.5 113 76.1
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.2e-44 183.7 125 67.2
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 1.6e-44 183.3 178 53.4
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 3.6e-44 182.2 190 51.6
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 4.7e-44 181.8 170 52.4
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 8.1e-44 181.0 120 72.5
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 1.1e-43 180.6 169 55.0
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 2.3e-43 179.5 104 76.0
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 6.8e-43 177.9 115 69.6
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.5e-37 160.2 138 59.4
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 7.3e-37 157.9 122 60.7
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 1.2e-36 157.1 146 58.2
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 2.1e-36 156.4 179 48.6
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 8.9e-35 151.0 93 68.8
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 3.4e-34 149.1 163 50.9
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 3.5e-31 139.0 106 58.5
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 3.5e-31 139.0 145 50.3
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 6.0e-31 138.3 106 58.5
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.0e-30 137.5 153 44.4
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.3e-30 137.1 162 45.1
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 1.3e-30 137.1 151 49.0
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.3e-30 137.1 110 60.0
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 2.3e-30 136.3 105 58.1
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 3.9e-30 135.6 152 48.0
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 6.6e-30 134.8 103 60.2
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 8.6e-30 134.4 104 58.7
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 8.6e-30 134.4 145 45.5
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 8.6e-30 134.4 106 56.6
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 1.5e-29 133.7 108 53.7
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 1.5e-29 133.7 105 57.1
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.5e-29 133.7 149 48.3
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.5e-29 133.7 162 45.7
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 2.5e-29 132.9 175 43.4
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 4.3e-29 132.1 105 56.2
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 7.3e-29 131.3 180 43.9
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 9.6e-29 131.0 151 49.0
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.2e-28 130.6 105 55.2
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 2.1e-28 129.8 105 55.2
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.1e-28 129.8 105 55.2
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 2.8e-28 129.4 106 53.8
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 2.8e-28 129.4 105 56.2
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 3.6e-28 129.0 103 56.3
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 3.6e-28 129.0 105 53.3
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 3.6e-28 129.0 124 52.4
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 3.6e-28 129.0 147 46.9
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 4.7e-28 128.6 105 56.2
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.1e-28 127.9 131 48.9
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 8.1e-28 127.9 103 56.3
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 8.1e-28 127.9 179 43.0
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 1.1e-27 127.5 162 45.7
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 1.1e-27 127.5 126 48.4
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 1.1e-27 127.5 167 42.5
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 1.4e-27 127.1 145 42.8
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.8e-27 126.7 105 54.3
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.8e-27 126.7 178 41.0
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 1.2e-26 124.0 62 88.7
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 2.0e-26 123.2 98 57.1
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 4.4e-26 122.1 94 60.6
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 9.9e-26 120.9 176 40.3
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 1.7e-25 120.2 147 42.9
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.9e-25 119.4 105 52.4
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 2.9e-25 119.4 123 46.3
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 2.9e-25 119.4 105 46.7
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 2.9e-25 119.4 61 83.6
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 6.4e-25 118.2 155 41.3
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.9e-24 116.7 146 41.8
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 5.4e-24 115.2 106 47.2
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 7.1e-24 114.8 104 50.0
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 9.3e-24 114.4 102 55.9
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 1.2e-23 114.0 149 40.9
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 3.5e-23 112.5 88 60.2
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 3.5e-23 112.5 164 40.9
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 7.3e-21 104.8 181 38.7
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 1.3e-20 104.0 181 38.1
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 1.6e-20 103.6 59 74.6
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 4.8e-20 102.1 94 50.0
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 6.2e-20 101.7 53 83.0
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 3.1e-19 99.4 105 45.7
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 1.5e-18 97.1 235 31.1
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.7e-17 93.6 98 51.0
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 2.4e-16 89.7 107 41.1
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 7.1e-16 88.2 258 28.3
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 1.2e-15 87.4 59 61.0
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 7.9e-15 84.7 97 47.4
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 6.9e-11 71.6 75 46.7
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 6.0e-07 58.5 47 55.3
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 1.3e-06 57.4 86 43.0
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 1.3e-06 57.4 47 55.3
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 1.3e-06 57.4 43 65.1
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 3.0e-06 56.2 62 46.8
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 3.0e-06 56.2 47 57.4


User provided reference genes

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