Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 2.9e-291 1004.6 532 100.0
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 1.3e-288 995.7 532 98.7
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 1.1e-269 932.9 533 93.1
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 9.9e-268 926.4 536 93.1
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 5.1e-264 914.1 535 91.0
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 7.9e-257 890.2 538 86.4
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 5.6e-255 884.0 536 85.4
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 5.3e-253 877.5 540 84.8
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 2.0e-252 875.5 539 86.3
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 3.2e-250 868.2 531 88.1
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.8e-248 862.4 539 83.5
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.9e-247 859.0 531 84.6
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 4.3e-247 857.8 532 84.2
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.5e-244 849.4 531 85.9
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 1.4e-242 842.8 535 85.0
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 9.7e-239 830.1 428 97.7
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 8.8e-232 807.0 562 77.0
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 6.3e-222 774.2 528 76.7
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.2e-220 770.0 522 77.0
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 1.2e-209 733.4 534 72.8
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 8.8e-208 727.2 538 71.9
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 2.8e-206 722.2 536 71.8
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 7.0e-205 717.6 507 72.6
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.0e-203 713.8 531 71.4
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 1.0e-203 713.8 539 70.7
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.3e-203 713.4 538 70.6
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.7e-203 713.0 428 83.2
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.2e-203 712.6 534 69.9
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 5.0e-203 711.4 535 70.3
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 6.5e-203 711.1 428 82.7
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 8.5e-203 710.7 538 70.8
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 8.5e-203 710.7 428 82.9
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 1.1e-202 710.3 523 72.1
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 1.1e-202 710.3 427 82.0
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.2e-202 708.8 457 78.6
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.2e-202 708.8 533 71.7
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 3.2e-202 708.8 518 73.6
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 4.2e-202 708.4 509 73.1
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 9.4e-202 707.2 532 71.2
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.6e-201 706.4 547 69.3
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.6e-201 706.4 444 79.1
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.1e-201 706.1 428 82.2
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.7e-201 705.7 458 78.4
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 4.7e-201 704.9 428 82.0
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 4.7e-201 704.9 541 69.7
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 1.4e-200 703.4 531 70.4
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 1.4e-200 703.4 426 81.5
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.8e-200 703.0 530 70.4
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 3.0e-200 702.2 545 68.8
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 3.0e-200 702.2 533 69.4
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 3.0e-200 702.2 521 74.1
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 4.0e-200 701.8 547 68.9
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 4.0e-200 701.8 536 69.4
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 5.2e-200 701.4 428 81.8
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 5.2e-200 701.4 426 80.8
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.2e-199 700.3 534 69.3
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.5e-199 699.9 487 73.9
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 1.5e-199 699.9 422 81.3
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 2.0e-199 699.5 526 70.5
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-199 698.7 422 81.5
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 1.3e-198 696.8 428 81.3
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.7e-198 696.4 424 81.4
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 2.8e-198 695.7 532 69.2
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.7e-198 695.3 528 71.8
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 4.8e-198 694.9 424 81.4
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 4.8e-198 694.9 422 81.3
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 6.3e-198 694.5 422 81.5
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 8.3e-198 694.1 422 81.0
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 1.1e-197 693.7 426 80.0
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.4e-197 693.3 422 81.0
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 1.8e-197 693.0 559 66.5
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 4.1e-197 691.8 421 80.3
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.1e-197 691.8 418 81.8
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 4.1e-197 691.8 426 79.6
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 7.0e-197 691.0 527 71.9
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 9.1e-197 690.6 422 81.3
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 2.0e-196 689.5 534 72.3
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.0e-196 689.5 422 80.8
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.7e-196 689.1 426 79.3
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 3.5e-196 688.7 537 70.2
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 3.5e-196 688.7 537 70.2
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 4.5e-196 688.3 426 80.3
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.9e-196 688.0 422 80.6
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 7.7e-196 687.6 531 69.1
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 1.0e-195 687.2 530 70.8
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.0e-195 687.2 422 80.8
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.7e-195 686.4 418 81.3
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 8.6e-195 684.1 428 79.0
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 2.5e-194 682.6 426 78.9
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.3e-194 682.2 488 72.1
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 3.3e-194 682.2 426 78.4
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 1.4e-192 676.8 445 76.2
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 4.0e-192 675.2 426 78.2
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.6e-191 672.5 422 79.4
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 3.4e-191 672.2 424 76.9
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 9.8e-191 670.6 424 77.1
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.3e-190 670.2 569 64.3
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.3e-190 670.2 424 77.1
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 2.2e-190 669.5 424 76.9
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 4.9e-190 668.3 422 77.7
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 8.3e-190 667.5 487 69.6
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 3.2e-189 665.6 449 73.7
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 3.3e-186 655.6 431 76.1
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 5.6e-186 654.8 423 75.2
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 6.1e-185 651.4 418 75.8
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.0e-184 650.6 408 84.3
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.2e-183 647.1 418 75.4
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.4e-183 645.6 396 81.8
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.2e-180 637.1 434 74.0
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.7e-180 636.0 434 74.0
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 5.0e-179 631.7 488 68.4
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 2.8e-177 625.9 419 72.6
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.1e-176 624.0 437 73.5
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.5e-175 620.2 422 71.8
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.0e-175 619.8 424 70.5
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.3e-174 617.1 464 69.0
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 5.6e-170 601.7 391 76.5
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 2.1e-169 599.7 420 68.8
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.0e-163 579.3 366 77.0
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 8.6e-163 577.8 418 67.9
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 3.0e-155 552.7 328 83.8
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 2.9e-142 509.6 418 62.4
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 7.9e-140 501.5 328 76.2
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.9e-140 501.5 396 70.2
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 4.8e-137 492.3 422 60.7
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.1e-136 489.6 290 83.8
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 9.0e-136 488.0 420 59.3
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 1.0e-131 474.6 290 80.0
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.3e-128 462.2 289 81.0
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 1.5e-122 444.1 277 78.3
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 7.4e-122 441.8 426 56.3
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.9e-117 427.2 289 75.1
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 8.5e-110 401.7 247 81.8
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.2e-103 381.3 421 48.2
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 4.8e-97 359.4 242 75.2
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.5e-90 337.8 424 44.6
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.5e-74 284.6 173 77.5
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.8e-67 261.2 343 42.6
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.6e-52 211.5 186 63.4
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.1e-51 207.2 135 74.1
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 4.4e-50 203.4 197 60.4
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.0e-46 192.2 161 68.9
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.3e-46 191.8 182 54.9
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 1.1e-45 188.7 197 57.9
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 5.6e-45 186.4 195 57.9
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.6e-44 184.9 175 62.3
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.1e-43 182.2 174 60.9
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 4.2e-40 170.2 120 69.2
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 7.1e-40 169.5 197 54.8
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.3e-38 164.5 129 63.6
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.5e-37 161.0 102 76.5
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 4.3e-37 160.2 112 71.4
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 2.9e-33 147.5 90 81.1
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 8.4e-33 146.0 160 55.6
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 8.4e-33 146.0 160 55.6
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 3.2e-32 144.1 94 69.1
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.9e-29 134.8 186 48.9
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 3.9e-22 110.5 78 66.7
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 6.7e-22 109.8 259 31.7
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 2.9e-17 94.4 82 64.6
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.6e-15 88.6 57 73.7
BcaB03g13286 Brassica carinata HOM05D000974 ORTHO05D091645 6.7e-06 56.6 28 96.4


User provided reference genes

Program Settings