Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24423 Brassica carinata HOM05D001653 ORTHO05D015791 2.9e-72 275.0 131 100.0
BcaC09g51438 Brassica carinata HOM05D001653 ORTHO05D015791 9.6e-23 110.5 55 94.5
C01p13110 Brassica napus HOM05D001653 ORTHO05D015791 9.6e-23 110.5 55 94.5
BolC1t01285H Brassica oleracea HOM05D001653 ORTHO05D015791 9.6e-23 110.5 55 94.5
BcaB06g26514 Brassica carinata HOM05D001653 ORTHO05D001751 1.3e-22 110.2 111 54.1
A07p08810 Brassica napus HOM05D001653 ORTHO05D001751 1.3e-22 110.2 111 54.1
C07p13670 Brassica napus HOM05D001653 ORTHO05D001751 1.3e-22 110.2 111 54.1
BraA07t28672Z Brassica rapa HOM05D001653 ORTHO05D001751 1.3e-22 110.2 111 54.1
Thhalv10020003m.g Eutrema salsugineum HOM05D001653 ORTHO05D001751 1.3e-22 110.2 111 54.1
Sp3g21260 Schrenkiella parvula HOM05D001653 ORTHO05D001751 1.3e-22 110.2 111 54.1
BcaC06g35542 Brassica carinata HOM05D001653 ORTHO05D001751 1.6e-22 109.8 111 54.1
BolC7t41862H Brassica oleracea HOM05D001653 ORTHO05D001751 1.6e-22 109.8 111 54.1
A03p67250 Brassica napus HOM05D001653 ORTHO05D015791 3.7e-22 108.6 55 92.7
CARHR100020 Cardamine hirsuta HOM05D001653 ORTHO05D001751 1.1e-21 107.1 111 52.3
A01p31490 Brassica napus HOM05D001653 ORTHO05D001751 1.4e-21 106.7 111 52.3
BraA01t03275Z Brassica rapa HOM05D001653 ORTHO05D001751 1.4e-21 106.7 111 52.3
Aa31LG8G10610 Aethionema arabicum HOM05D001653 ORTHO05D001751 1.8e-21 106.3 111 51.4
AL3G39080 Arabidopsis lyrata HOM05D001653 ORTHO05D001751 1.8e-21 106.3 111 51.4
AT3G24180 Arabidopsis thaliana HOM05D001653 ORTHO05D001751 1.8e-21 106.3 111 51.4
C01p40130 Brassica napus HOM05D001653 ORTHO05D001751 1.8e-21 106.3 111 51.4
BolC1t03969H Brassica oleracea HOM05D001653 ORTHO05D001751 3.1e-21 105.5 111 51.4
Carub.0003s2432 Capsella rubella HOM05D001653 ORTHO05D001751 9.0e-21 104.0 111 50.5
Aa31LG8G10640 Aethionema arabicum HOM05D001653 ORTHO05D001751 3.4e-20 102.1 111 50.5
Cpa.g.sc59.121 Carica papaya HOM05D001653 ORTHO05D001751 4.5e-20 101.7 111 49.5
THA.LOC104808721 Tarenaya hassleriana HOM05D001653 ORTHO05D001751 7.6e-20 100.9 111 48.6
Aa31LG8G10630 Aethionema arabicum HOM05D001653 ORTHO05D015791 1.3e-19 100.1 70 72.9
Gohir.A09G203900 Gossypium hirsutum HOM05D001653 ORTHO05D001751 2.9e-19 99.0 113 46.9
Gorai.006G221200 Gossypium raimondii HOM05D001653 ORTHO05D001751 2.9e-19 99.0 113 46.9
TAR633G0328 Trochodendron aralioides HOM05D001653 ORTHO05D001751 2.9e-19 99.0 73 68.5
Duzib151G0060 Durio zibethinus HOM05D001653 ORTHO05D001751 4.9e-19 98.2 113 46.9
TAR362G1095 Trochodendron aralioides HOM05D001653 ORTHO05D001751 4.9e-19 98.2 113 47.8
Manes.15G051715 Manihot esculenta HOM05D001653 ORTHO05D001751 6.5e-19 97.8 105 51.4
Dinv29582 Davidia involucrata HOM05D001653 ORTHO05D001751 1.1e-18 97.1 107 49.5
Lalb_Chr21g0312621 Lupinus albus HOM05D001653 ORTHO05D001751 1.4e-18 96.7 85 55.3
Nn1g07801 Nelumbo nucifera HOM05D001653 ORTHO05D001751 1.4e-18 96.7 80 62.5
HPP92_022497 Vanilla planifolia HOM05D001653 ORTHO05D001751 1.9e-18 96.3 107 45.8
HPP92_022504 Vanilla planifolia HOM05D001653 ORTHO05D001751 1.9e-18 96.3 107 45.8
PGR083G1395 Punica granatum HOM05D001653 ORTHO05D001751 2.5e-18 95.9 107 47.7
Thecc.04G206800 Theobroma cacao HOM05D001653 ORTHO05D001751 2.5e-18 95.9 74 63.5
Atru.chr4.1741 Acer truncatum HOM05D001653 ORTHO05D001751 3.2e-18 95.5 110 44.5
CiPaw.01G123600 Carya illinoinensis HOM05D001653 ORTHO05D001751 4.2e-18 95.1 107 48.6
ClCG06G007680 Citrullus lanatus HOM05D001653 ORTHO05D001751 5.5e-18 94.7 84 58.3
Duzib212G0715 Durio zibethinus HOM05D001653 ORTHO05D001751 5.5e-18 94.7 91 52.7
MBI10_g33979_MAGBIO Magnolia biondii HOM05D001653 ORTHO05D001751 5.5e-18 94.7 107 45.8
Sc25g0005850 Simmondsia chinensis HOM05D001653 ORTHO05D001751 5.5e-18 94.7 107 46.7
Cfa011813 Carpinus fangiana HOM05D001653 ORTHO05D001751 7.1e-18 94.4 111 46.8
Haze_11592 Corylus avellana HOM05D001653 ORTHO05D001751 7.1e-18 94.4 72 65.3
CsaV3_2G011410 Cucumis sativus L. HOM05D001653 ORTHO05D001751 7.1e-18 94.4 104 49.0
Glyma.10G192400 Glycine max HOM05D001653 ORTHO05D001751 7.1e-18 94.4 111 44.1
Lalb_Chr06g0169731 Lupinus albus HOM05D001653 ORTHO05D001751 7.1e-18 94.4 85 55.3
Os10g0473400 Oryza sativa ssp. japonica HOM05D001653 ORTHO05D001751 7.1e-18 94.4 66 68.2
GSVIVG01029084001 Vitis vinifera HOM05D001653 ORTHO05D015791 7.1e-18 94.4 66 68.2
MELO3C020463.2 Cucumis melo HOM05D001653 ORTHO05D001751 9.3e-18 94.0 78 61.5
Glyma.20G198000 Glycine max HOM05D001653 ORTHO05D001751 9.3e-18 94.0 85 55.3
Potri.003G178000 Populus trichocarpa HOM05D001653 ORTHO05D001751 9.3e-18 94.0 112 49.1
Gohir.A10G122500 Gossypium hirsutum HOM05D001653 ORTHO05D001751 1.2e-17 93.6 116 45.7
TWI09G1409 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 1.2e-17 93.6 105 49.5
A10p03650 Brassica napus HOM05D000050 ORTHO05D015791 2.1e-17 92.8 47 93.6
QL06p023857 Quercus lobata HOM05D001653 ORTHO05D001751 2.1e-17 92.8 107 47.7
VMungo0720G3080 Vigna mungo HOM05D001653 ORTHO05D001751 2.1e-17 92.8 85 54.1
Sed0018326 Sechium edule HOM05D001653 ORTHO05D001751 2.7e-17 92.4 78 60.3
SEGI_29816 Sequoiadendron giganteum HOM05D001653 ORTHO05D001751 2.7e-17 92.4 105 48.6
PSO017G1217 Papaver somniferum HOM05D001653 ORTHO05D001751 3.5e-17 92.0 111 45.0
PSO063G1073 Papaver somniferum HOM05D001653 ORTHO05D001751 3.5e-17 92.0 111 45.0
Peaxi162Scf00047g00732 Petunia axillaris HOM05D001653 ORTHO05D001751 3.5e-17 92.0 117 42.7
CDE02G0890 Ceratophyllum demersum HOM05D001653 ORTHO05D001751 4.6e-17 91.7 76 63.2
Ciclev10004255m.g Citrus clementina HOM05D001653 ORTHO05D001751 6.0e-17 91.3 85 52.9
Eucgr.H02851 Eucalyptus grandis HOM05D001653 ORTHO05D001751 6.0e-17 91.3 106 47.2
Manes.03G149301 Manihot esculenta HOM05D001653 ORTHO05D001751 6.0e-17 91.3 105 48.6
Nitab4.5_0003750g0030 Nicotiana tabacum HOM05D001653 ORTHO05D001751 6.0e-17 91.3 108 45.4
Nitab4.5_0004974g0080 Nicotiana tabacum HOM05D001653 ORTHO05D001751 6.0e-17 91.3 108 45.4
Gohir.D10G143500 Gossypium hirsutum HOM05D001653 ORTHO05D001751 7.9e-17 90.9 116 43.1
Gorai.011G160300 Gossypium raimondii HOM05D001653 ORTHO05D001751 7.9e-17 90.9 116 43.1
Lj5g0004348 Lotus japonicus HOM05D001653 ORTHO05D001751 7.9e-17 90.9 111 44.1
Medtr1g072720 Medicago truncatula HOM05D001653 ORTHO05D001751 7.9e-17 90.9 81 55.6
Phvul.007G134300 Phaseolus vulgaris HOM05D001653 ORTHO05D001751 7.9e-17 90.9 85 54.1
Rhsim09G0054000 Rhododendron simsii HOM05D001653 ORTHO05D001751 7.9e-17 90.9 104 47.1
Rhsim09G0054600 Rhododendron simsii HOM05D001653 ORTHO05D001751 7.9e-17 90.9 104 47.1
EL10Ac2g02501 Beta vulgaris HOM05D001653 ORTHO05D001751 1.0e-16 90.5 113 43.4
Lj6A562G37 Lonicera japonica HOM05D001653 ORTHO05D001751 1.0e-16 90.5 115 45.2
Ca_09778_v3 Cicer arietinum L. HOM05D001653 ORTHO05D001751 1.3e-16 90.1 89 51.7
Dinv38253 Davidia involucrata HOM05D001653 ORTHO05D001751 1.8e-16 89.7 107 45.8
Sabra03G0130600 Salix brachista HOM05D001653 ORTHO05D001751 2.3e-16 89.4 112 47.3
CAN.G500.17 Capsicum annuum HOM05D001653 ORTHO05D001751 3.9e-16 88.6 108 42.6
HanXRQChr07g0185671 Helianthus annuus HOM05D001653 ORTHO05D001751 3.9e-16 88.6 106 45.3
BraA10t42639Z Brassica rapa HOM05D000050 ORTHO05D015791 5.1e-16 88.2 49 85.7
Zm00001eb096750 Zea mays HOM05D001653 ORTHO05D001751 5.1e-16 88.2 105 44.8
FvH4_4g00440 Fragaria vesca HOM05D001653 ORTHO05D001751 6.7e-16 87.8 68 63.2
FAN12G2988 Fragaria x ananassa HOM05D001653 ORTHO05D001751 6.7e-16 87.8 68 63.2
FAN22G1060 Fragaria x ananassa HOM05D001653 ORTHO05D001751 6.7e-16 87.8 68 63.2
Zm00001eb046040 Zea mays HOM05D001653 ORTHO05D001751 8.7e-16 87.4 105 43.8
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.1e-15 87.0 57 68.4
DCAR_026598 Daucus carota HOM05D001653 ORTHO05D001751 1.1e-15 87.0 81 54.3
Prupe.1G004700 Prunus persica HOM05D001653 ORTHO05D001751 1.5e-15 86.7 68 63.2
TPR.G1596 Trifolium pratense HOM05D001653 ORTHO05D001751 1.5e-15 86.7 81 54.3
Solyc09g091850.4 Solanum lycopersicum HOM05D001653 ORTHO05D001751 1.9e-15 86.3 82 52.4
Sopen09g034740 Solanum pennellii HOM05D001653 ORTHO05D001751 1.9e-15 86.3 82 52.4
Actinidia33392 Actinidia chinensis HOM05D001653 ORTHO05D015791 2.5e-15 85.9 79 59.5
C05p03360 Brassica napus HOM05D000050 ORTHO05D000654 2.5e-15 85.9 41 100.0
Psat6g141360 Pisum sativum HOM05D001653 ORTHO05D001751 3.3e-15 85.5 81 53.1
PGSC0003DMG400029664 Solanum tuberosum HOM05D001653 ORTHO05D001751 3.3e-15 85.5 82 51.2
ATR0736G214 Amborella trichopoda HOM05D001653 ORTHO05D001751 4.3e-15 85.1 81 54.3
ECA233G1914 Erigeron canadensis HOM05D001653 ORTHO05D001751 5.7e-15 84.7 79 54.4
MBI07_g37089_MAGBIO Magnolia biondii HOM05D001653 ORTHO05D001751 5.7e-15 84.7 61 68.9
vmacro00486 Vaccinium macrocarpon HOM05D001653 ORTHO05D001751 5.7e-15 84.7 54 74.1
Actinidia25625 Actinidia chinensis HOM05D001653 ORTHO05D001751 7.4e-15 84.3 107 45.8
Actinidia35875 Actinidia chinensis HOM05D001653 ORTHO05D001751 7.4e-15 84.3 107 45.8
AUR62042620 Chenopodium quinoa HOM05D001653 ORTHO05D001751 7.4e-15 84.3 57 64.9
MD04G1004800 Malus domestica HOM05D001653 ORTHO05D001751 9.6e-15 84.0 60 66.7
Eucgr.H00075 Eucalyptus grandis HOM05D001653 ORTHO05D001751 1.6e-14 83.2 84 52.4
CSS0014444 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 4.8e-14 81.6 107 43.0
CSS0017520 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 4.8e-14 81.6 107 43.0
RcHm_v2.0_Chr4g0385861 Rosa chinensis HOM05D001653 ORTHO05D001751 4.8e-14 81.6 107 43.9
Ah.03g135480 Amaranthus hybridus HOM05D001653 ORTHO05D001751 6.3e-14 81.3 62 64.5
CiPaw.02G067400 Carya illinoinensis HOM05D001653 ORTHO05D001751 1.1e-13 80.5 107 43.9
Migut.N00368 Erythranthe guttata HOM05D001653 ORTHO05D001751 1.1e-13 80.5 100 45.0
Hund22355 Selenicereus undatus HOM05D001653 ORTHO05D001751 1.4e-13 80.1 118 39.0
DCAR_024488 Daucus carota HOM05D001653 ORTHO05D001751 5.3e-13 78.2 105 41.0
SGA_v2.0_scaffold356G49800 Striga asiatica HOM05D001653 ORTHO05D001751 6.9e-13 77.8 109 43.1
Lsat_1_v5_gn_6_59560 Lactuca sativa HOM05D001653 ORTHO05D001751 1.2e-12 77.0 100 42.0
Oeu001466.1 Olea europaea HOM05D001653 ORTHO05D001751 5.9e-12 74.7 105 41.9
Lsat_1_v5_gn_2_45581 Lactuca sativa HOM05D001653 ORTHO05D001751 1.0e-11 73.9 107 38.3
SalBow3G3025 Salvia bowleyana HOM05D001653 ORTHO05D001751 1.7e-11 73.2 103 39.8
ECA238G1066 Erigeron canadensis HOM05D001653 ORTHO05D001751 2.9e-11 72.4 81 49.4
DCAR_030790 Daucus carota HOM05D001653 ORTHO05D001751 5.5e-10 68.2 79 46.8
BcaC08g44430 Brassica carinata HOM05D000522 ORTHO05D021960 1.2e-09 67.0 33 90.9
C06p18650 Brassica napus HOM05D000282 ORTHO05D021960 1.2e-09 67.0 33 90.9
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 1.2e-09 67.0 33 90.9
BraA03t11615Z Brassica rapa HOM05D000282 ORTHO05D021960 1.2e-09 67.0 33 90.9
Pp3c8_21730 Physcomitrium patens HOM05D001653 ORTHO05D001751 1.6e-09 66.6 100 39.0
MSTRG.21956 Avicennia marina HOM05D001653 ORTHO05D001751 2.1e-09 66.2 113 35.4
Cc03_g07580 Coffea canephora HOM05D001653 ORTHO05D001751 3.5e-09 65.5 64 51.6
Pp3c20_20340 Physcomitrium patens HOM05D001653 ORTHO05D001751 1.3e-08 63.5 51 56.9
SMO116G0418 Selaginella moellendorffii HOM05D001653 ORTHO05D001751 1.3e-08 63.5 95 36.8
AagrBONN_evm.TU.Sc2ySwM_368.238 Anthoceros agrestis HOM05D001653 ORTHO05D001751 2.3e-08 62.8 50 60.0
ECA236G1434 Erigeron canadensis HOM05D001653 ORTHO05D001751 1.5e-07 60.1 75 50.7
Mapoly0044s0112 Marchantia polymorpha HOM05D001653 ORTHO05D001751 2.5e-07 59.3 110 34.5
CBR_g48710 Chara braunii HOM05D001653 ORTHO05D000353 4.3e-07 58.5 58 53.4
MBI03_g28418_MAGBIO Magnolia biondii HOM05D001653 ORTHO05D001751 5.7e-07 58.2 95 37.9
Manes.10G115000 Manihot esculenta HOM05D001653 ORTHO05D001751 5.7e-07 58.2 108 38.9
COL.COLO4_17691 Corchorus olitorius HOM05D001653 ORTHO05D001751 1.6e-06 56.6 117 40.2
SEGI_16978 Sequoiadendron giganteum HOM05D001653 ORTHO05D015791 1.6e-06 56.6 51 56.9
TWI75G0255 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 1.6e-06 56.6 125 34.4
Thecc.02G014100 Theobroma cacao HOM05D001653 ORTHO05D001751 2.2e-06 56.2 121 35.5
Duzib132G0784 Durio zibethinus HOM05D001653 ORTHO05D001751 4.8e-06 55.1 121 36.4
TWI59G1321 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 4.8e-06 55.1 98 37.8
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 6.3e-06 54.7 38 68.4
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 8.2e-06 54.3 33 69.7
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 8.2e-06 54.3 43 60.5
HanXRQChr11g0329671 Helianthus annuus HOM05D001653 ORTHO05D001751 8.2e-06 54.3 72 45.8


User provided reference genes

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