Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24317 Brassica carinata HOM05D000896 ORTHO05D000594 2.0e-52 208.8 100 100.0
C05p04280 Brassica napus HOM05D000896 ORTHO05D000594 6.2e-46 187.2 92 97.8
BolC5t29203H Brassica oleracea HOM05D000896 ORTHO05D000594 2.3e-45 185.3 92 96.7
A10p04620 Brassica napus HOM05D000896 ORTHO05D000594 9.9e-44 179.9 92 92.4
BraA10t42727Z Brassica rapa HOM05D000896 ORTHO05D000594 9.9e-44 179.9 92 92.4
BcaC05g24319 Brassica carinata HOM05D000896 ORTHO05D000594 4.4e-36 154.5 93 82.8
Thhalv10009348m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.6e-25 119.4 92 62.0
AT1G05920 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 2.0e-20 102.4 80 58.8
AL3G40610 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 2.9e-19 98.6 88 50.0
AL3G40940 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 3.8e-19 98.2 88 50.0
AL1G15880 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 5.4e-18 94.4 80 52.5
AT3G24850 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 5.4e-18 94.4 88 47.7
AT5G24050 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.2e-17 93.2 88 47.7
Carub.0003s2555 Capsella rubella HOM05D000896 ORTHO05D000594 2.7e-17 92.0 88 46.6
AL3G40220 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.6e-17 91.3 88 47.7
Thhalv10029471m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 7.9e-17 90.5 81 48.1
Sp1g04760 Schrenkiella parvula HOM05D000896 ORTHO05D000594 1.8e-16 89.4 81 55.6
Thhalv10029259m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 2.3e-16 89.0 81 44.4
Thhalv10029136m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 4.3e-15 84.7 81 45.7
AL1G15890 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.1e-13 80.1 83 47.0
AT1G05930 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 9.0e-13 77.0 81 45.7
A09p17570 Brassica napus HOM05D000896 ORTHO05D000594 1.2e-12 76.6 81 46.9
BraA09t37387Z Brassica rapa HOM05D000896 ORTHO05D000594 1.2e-12 76.6 81 46.9
Carub.0001s0530 Capsella rubella HOM05D000896 ORTHO05D000594 1.2e-12 76.6 81 48.1
SpUn1102_0010 Schrenkiella parvula HOM05D000896 ORTHO05D000594 1.5e-12 76.3 81 43.2
BcaB07g31212 Brassica carinata HOM05D000896 ORTHO05D000594 2.6e-12 75.5 81 46.9
BcaC04g22224 Brassica carinata HOM05D000896 ORTHO05D000594 3.4e-12 75.1 81 46.9
C09p21870 Brassica napus HOM05D000896 ORTHO05D000594 3.4e-12 75.1 81 46.9
BolC9t55092H Brassica oleracea HOM05D000896 ORTHO05D000594 3.4e-12 75.1 81 46.9
Thhalv10029469m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 4.5e-12 74.7 80 41.2
AT5G38490 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 2.2e-11 72.4 76 44.7
Aa31LG1G8320 Aethionema arabicum HOM05D000896 ORTHO05D000594 2.9e-11 72.0 92 40.2
Aa31LG1G8390 Aethionema arabicum HOM05D000896 ORTHO05D000594 2.9e-11 72.0 92 40.2
AL7G52070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 6.5e-11 70.9 71 45.1
THA.LOC104827386 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 8.4e-11 70.5 70 42.9
THA.LOC104827387 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 8.4e-11 70.5 70 42.9
Thhalv10009508m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.4e-10 69.7 85 41.2
THA.LOC104827391 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 1.4e-10 69.7 70 42.9
AL7G25460 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.2e-10 68.2 73 43.8
THA.LOC104826207 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 4.2e-10 68.2 70 42.9
AL7G52080 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 5.5e-10 67.8 77 45.5
Sp6g07490 Schrenkiella parvula HOM05D000896 ORTHO05D000594 5.5e-10 67.8 77 40.3
BcaC05g24385 Brassica carinata HOM05D000896 ORTHO05D000594 7.1e-10 67.4 85 41.2
C05p03790 Brassica napus HOM05D000896 ORTHO05D000594 7.1e-10 67.4 85 41.2
BolC5t29156H Brassica oleracea HOM05D000896 ORTHO05D000594 7.1e-10 67.4 85 41.2
Carub.0007s3741 Capsella rubella HOM05D000896 ORTHO05D000594 7.1e-10 67.4 81 40.7
AL1G46070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 9.3e-10 67.0 79 43.0
Carub.0322s0001 Capsella rubella HOM05D000896 ORTHO05D000594 9.3e-10 67.0 75 45.3
CARHR217360 Cardamine hirsuta HOM05D000896 ORTHO05D000594 1.6e-09 66.2 66 45.5
A09p34210 Brassica napus HOM05D000896 ORTHO05D000594 2.7e-09 65.5 76 39.5
BraA09t38969Z Brassica rapa HOM05D000896 ORTHO05D000594 2.7e-09 65.5 76 39.5
BraA10t42685Z Brassica rapa HOM05D000896 ORTHO05D000594 2.7e-09 65.5 84 41.7
A10p04160 Brassica napus HOM05D000896 ORTHO05D000594 4.6e-09 64.7 83 38.6
Aa31LG1G8430 Aethionema arabicum HOM05D000896 ORTHO05D000594 7.9e-09 63.9 71 38.0
BolC1t01330H Brassica oleracea HOM05D000896 ORTHO05D000594 1.8e-08 62.8 68 47.1
BcaC05g27223 Brassica carinata HOM05D000896 ORTHO05D000594 2.3e-08 62.4 76 38.2
BolC5t31856H Brassica oleracea HOM05D000896 ORTHO05D000594 2.3e-08 62.4 76 38.2
BcaB07g32861 Brassica carinata HOM05D000896 ORTHO05D000594 3.0e-08 62.0 74 40.5
BcaB02g06859 Brassica carinata HOM05D000896 ORTHO05D000594 3.9e-08 61.6 86 38.4
AT3G49610 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 6.7e-08 60.8 82 37.8
Carub.0007s1353 Capsella rubella HOM05D000896 ORTHO05D000594 6.7e-08 60.8 73 43.8
AT1G32030 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.1e-07 60.1 76 44.7
C05p31330 Brassica napus HOM05D000896 ORTHO05D000594 1.9e-07 59.3 76 36.8
CARHR005450 Cardamine hirsuta HOM05D000896 ORTHO05D000594 3.3e-07 58.5 71 39.4
Duzib138G1815 Durio zibethinus HOM05D000896 ORTHO05D000594 3.3e-07 58.5 81 37.0
Aa31LG5G5490 Aethionema arabicum HOM05D000896 ORTHO05D000594 4.3e-07 58.2 77 36.4
Aa31sc1610G20 Aethionema arabicum HOM05D000896 ORTHO05D000594 4.3e-07 58.2 77 36.4
AT5G38500 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 4.3e-07 58.2 64 43.8
AL5G29460 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 9.6e-07 57.0 81 35.8
Aa31LG1G8280 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.3e-06 56.6 74 37.8
Thhalv10009706m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.3e-06 56.6 72 38.9
Thhalv10009730m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 1.3e-06 56.6 72 38.9
AL4G41370 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 2.1e-06 55.8 89 37.1
PGSC0003DMG400043436 Solanum tuberosum HOM05D000896 ORTHO05D000594 3.7e-06 55.1 65 40.0
Atru.chr3.2654 Acer truncatum HOM05D000896 ORTHO05D000594 6.2e-06 54.3 57 43.9
Atru.chr3.2660 Acer truncatum HOM05D000896 ORTHO05D000594 6.2e-06 54.3 57 43.9
Hund03518 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.2e-06 54.3 81 32.1
BcaC02g07220 Brassica carinata HOM05D000896 ORTHO05D000594 8.2e-06 53.9 81 33.3
C04p69900 Brassica napus HOM05D000896 ORTHO05D000594 8.2e-06 53.9 81 33.3
BolC4t28489H Brassica oleracea HOM05D000896 ORTHO05D000594 8.2e-06 53.9 81 33.3


User provided reference genes

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