Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 3560.0 1899 100.0
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 3500.7 1895 98.0
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 3496.1 1896 98.3
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 3310.4 1901 93.6
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 3294.6 1915 92.5
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 3168.3 1911 88.3
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 3038.4 1964 82.8
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 3035.4 1948 83.6
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 2998.0 1935 82.6
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 2923.7 1946 80.8
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 2920.6 1847 83.0
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 2804.2 1887 78.9
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 2543.5 1877 72.8
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2049.2 1882 59.8
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2035.0 1912 58.6
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2024.2 1883 59.3
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2018.0 1876 59.0
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2004.2 1864 59.9
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2003.4 1862 59.8
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1995.3 1871 58.8
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1995.3 1869 59.2
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1988.4 1861 58.7
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1977.2 1859 58.5
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1968.7 1843 57.9
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1954.1 1883 57.1
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1951.4 1857 57.6
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1934.5 1851 57.4
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1919.8 1981 54.1
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1912.1 1826 57.8
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1908.6 1834 57.5
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1903.3 1841 57.6
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1894.8 1826 57.6
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1889.4 1817 57.6
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1889.4 1840 57.4
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1877.8 1835 56.7
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1876.3 1859 56.1
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1874.4 1849 55.4
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1862.4 1816 57.3
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1862.0 1860 55.3
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1860.9 1820 57.4
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1852.4 1851 55.7
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1850.9 1875 55.7
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1850.1 1851 55.1
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1848.9 1850 56.4
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1848.2 1844 55.4
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1843.2 1851 55.2
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1842.8 1844 56.3
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1838.2 1892 54.3
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1835.8 1850 55.2
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1832.8 1854 55.0
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1820.4 1906 54.4
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1816.6 1874 54.6
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1812.7 1893 53.9
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1808.5 1890 54.5
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1806.2 1893 54.1
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1803.1 1843 54.6
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1801.6 1622 58.8
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1793.9 1567 59.9
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1792.7 1903 53.5
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1774.6 1561 59.1
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1770.0 1859 52.9
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1767.3 1881 53.2
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1754.2 1588 58.7
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1738.4 1848 52.8
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1721.8 2015 50.4
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1713.0 1980 50.8
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1700.6 1892 50.5
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1698.7 1837 52.2
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1688.3 1873 50.5
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1684.5 1948 50.9
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1665.6 1849 52.7
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1649.4 1868 50.4
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1645.9 1875 50.9
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1645.2 1878 51.7
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1640.6 1879 49.7
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1633.6 1957 50.2
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1612.0 1461 57.9
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 0.0e+00 1605.9 962 84.2
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1598.2 1881 49.3
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1597.0 1865 49.1
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1595.9 1874 48.4
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1591.2 1914 49.1
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1585.1 1851 48.7
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1582.4 1866 48.9
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1581.2 1899 48.8
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1581.2 1824 49.7
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1572.8 1847 49.8
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1570.1 1560 55.5
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1560.8 1912 47.1
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1556.2 1768 50.1
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1556.2 1868 48.9
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1556.2 1868 48.9
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1548.5 1862 48.2
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1547.3 1353 59.6
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1540.4 1851 49.0
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1483.8 1841 47.4
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1480.7 1824 47.4
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1477.6 1457 54.1
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1453.0 1858 46.0
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1404.4 1246 58.8
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1325.1 1160 59.7
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1083.9 1727 38.9
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 1.6e-299 1033.9 1627 39.0
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 6.8e-295 1018.5 1719 37.5
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 7.8e-291 1005.0 1956 35.6
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 1.6e-280 970.7 1011 54.8
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 5.1e-274 949.1 1856 36.0
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 7.4e-273 945.3 1866 36.5
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 4.2e-260 902.9 1003 52.6
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 2.1e-251 874.0 1037 48.4
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 6.7e-234 815.8 898 50.7
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.0e-225 787.7 866 53.1
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 5.0e-221 773.1 1464 35.6
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 7.2e-220 769.2 1050 43.5
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 2.6e-217 760.8 1795 31.2
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.3e-216 758.4 960 47.1
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 9.3e-167 592.8 543 57.5
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 6.6e-165 586.6 582 56.0
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 6.2e-163 580.1 1175 34.2
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 5.8e-145 520.4 665 56.4
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 4.2e-135 487.6 826 39.8
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.0e-133 481.5 665 42.9
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 2.8e-131 474.9 476 56.3
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.6e-126 459.1 547 46.1
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.2e-121 443.0 567 45.9
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.9e-113 414.1 550 42.4
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.2e-100 373.2 586 44.0
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 8.6e-88 330.5 277 61.0
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 1.1e-66 260.4 379 41.7
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 4.7e-62 245.0 475 34.3
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 3.4e-52 212.2 378 36.5
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 2.4e-50 206.1 226 49.1
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.3e-43 183.7 1193 21.3
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.2e-41 177.2 527 31.7
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 3.5e-41 175.6 349 36.1
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.1e-37 164.1 144 53.5
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 2.4e-37 162.9 412 35.7
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 2.7e-33 149.4 202 37.6
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 5.7e-31 141.7 164 45.1
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-29 137.1 163 44.8
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 5.8e-28 131.7 164 42.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 6.5e-27 128.3 112 59.8
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.6e-25 122.1 225 34.7
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 1.0e-24 120.9 122 52.5
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 5.7e-23 115.2 80 66.2
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.8e-22 112.8 130 49.2
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.2e-20 107.5 93 59.1
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 5.9e-20 105.1 244 29.5
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.7e-19 103.6 150 45.3
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 1.7e-19 103.6 85 62.4
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 8.5e-19 101.3 224 36.2
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 1.9e-18 100.1 376 26.6
BcaB01g02313 Brassica carinata HOM05D004392 ORTHO05D004846 1.5e-15 90.5 120 65.8
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 2.6e-12 79.7 56 67.9
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.3e-11 77.4 55 63.6
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 5.0e-11 75.5 141 32.6
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 5.5e-10 72.0 150 31.3
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 3.6e-09 69.3 59 59.3
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 3.0e-08 66.2 71 46.5
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 4.4e-07 62.4 97 35.1
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 8.2e-06 58.2 41 73.2
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 8.2e-06 58.2 141 30.5


User provided reference genes

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