Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23767 Brassica carinata HOM05D009323 ORTHO05D012741 1.1e-124 449.9 215 100.0
C09p04900 Brassica napus HOM05D009323 ORTHO05D012741 1.8e-122 442.6 215 98.6
BolC9t53418H Brassica oleracea HOM05D009323 ORTHO05D012741 1.8e-122 442.6 215 98.6
BraA09t36094Z Brassica rapa HOM05D009323 ORTHO05D012741 1.5e-113 412.9 216 93.1
A09p04590 Brassica napus HOM05D009323 ORTHO05D012741 1.6e-112 409.5 216 92.6
BcaB04g19582 Brassica carinata HOM05D009323 ORTHO05D012741 5.9e-102 374.4 220 86.8
A06p39000 Brassica napus HOM05D009323 ORTHO05D012741 1.2e-78 297.0 222 71.6
AT5G48657 Arabidopsis thaliana HOM05D009323 ORTHO05D012741 3.8e-77 292.0 219 71.2
Thhalv10004864m.g Eutrema salsugineum HOM05D009323 ORTHO05D012741 3.2e-76 288.9 223 68.6
Carub.0008s0835 Capsella rubella HOM05D009323 ORTHO05D012741 2.1e-75 286.2 220 69.5
C07p39330 Brassica napus HOM05D009323 ORTHO05D012741 8.0e-75 284.3 219 70.3
BolC7t44453H Brassica oleracea HOM05D009323 ORTHO05D012741 8.0e-75 284.3 219 70.3
AL8G21710 Arabidopsis lyrata HOM05D009323 ORTHO05D012741 2.6e-73 279.3 220 69.5
CARHR183260 Cardamine hirsuta HOM05D009323 ORTHO05D012741 2.6e-73 279.3 220 67.3
Sp2g19070 Schrenkiella parvula HOM05D009323 ORTHO05D012741 1.7e-72 276.6 223 69.5
BcaC06g30771 Brassica carinata HOM05D009323 ORTHO05D012741 4.0e-66 255.4 224 65.2
BraA06t26814Z Brassica rapa HOM05D009323 ORTHO05D012741 1.8e-63 246.5 190 70.5
Aa31sc571G10 Aethionema arabicum HOM05D009323 ORTHO05D012741 2.3e-53 213.0 226 59.7
Carub.0003s0671 Capsella rubella HOM05D009323 ORTHO05D015248 1.2e-30 137.5 236 42.8
BolC3t16543H Brassica oleracea HOM05D009323 ORTHO05D015248 2.5e-28 129.8 221 43.0
A03p35140 Brassica napus HOM05D009323 ORTHO05D015248 3.3e-28 129.4 221 43.0
BraA03t12694Z Brassica rapa HOM05D009323 ORTHO05D015248 3.6e-27 125.9 221 42.5
THA.LOC104818969 Tarenaya hassleriana HOM05D009323 ORTHO05D012741 6.2e-27 125.2 221 40.3
THA.LOC104802661 Tarenaya hassleriana HOM05D009323 ORTHO05D012741 4.9e-24 115.5 236 39.4
CARHR081840 Cardamine hirsuta HOM05D009323 ORTHO05D015248 4.2e-23 112.5 218 40.8
Thhalv10021478m.g Eutrema salsugineum HOM05D009323 ORTHO05D015248 6.0e-22 108.6 231 40.3
Sp3g06140 Schrenkiella parvula HOM05D009323 ORTHO05D015248 1.1e-20 104.4 218 37.2
BcaC05g29747 Brassica carinata HOM05D002516 ORTHO05D002703 1.3e-19 100.9 228 38.2
Aa31LG5G17760 Aethionema arabicum HOM05D009323 ORTHO05D015248 1.1e-18 97.8 207 37.2
AL3G18460 Arabidopsis lyrata HOM05D009323 ORTHO05D015248 9.9e-17 91.3 237 38.4
BcaC05g29849 Brassica carinata HOM05D002516 ORTHO05D002703 6.4e-16 88.6 213 37.1
BolC5t34668H Brassica oleracea HOM05D009323 ORTHO05D015248 6.4e-16 88.6 219 36.5
AT3G07195 Arabidopsis thaliana HOM05D009323 ORTHO05D015248 3.2e-15 86.3 222 34.7
BraA05t22828Z Brassica rapa HOM05D002516 ORTHO05D002703 8.7e-13 78.2 199 35.7
Potri.002G245400 Populus trichocarpa HOM05D002186 ORTHO05D002225 1.5e-12 77.4 271 31.7
Manes.13G048800 Manihot esculenta HOM05D002186 ORTHO05D002225 2.5e-12 76.6 271 32.5
Thecc.01G221600 Theobroma cacao HOM05D002186 ORTHO05D002225 7.4e-12 75.1 271 32.1
A05p41010 Brassica napus HOM05D002516 ORTHO05D002703 9.6e-12 74.7 198 35.4
Duzib133G1090 Durio zibethinus HOM05D002186 ORTHO05D002225 1.3e-11 74.3 270 33.7
GSVIVG01004747001 Vitis vinifera HOM05D002186 ORTHO05D002225 2.4e-10 70.1 225 33.8
Gorai.001G232400 Gossypium raimondii HOM05D002186 ORTHO05D002225 5.3e-10 68.9 266 28.9
Duzib138G0625 Durio zibethinus HOM05D002186 ORTHO05D002225 6.9e-10 68.6 270 29.6
QL09p051777 Quercus lobata HOM05D002186 ORTHO05D002225 6.9e-10 68.6 270 30.4
C03p42750 Brassica napus HOM05D009323 ORTHO05D015248 9.0e-10 68.2 57 57.9
Gohir.D07G206100 Gossypium hirsutum HOM05D002186 ORTHO05D002225 1.2e-09 67.8 266 28.6
Sabra02G0186700 Salix brachista HOM05D002186 ORTHO05D002225 1.2e-09 67.8 269 31.2
Actinidia09472 Actinidia chinensis HOM05D002186 ORTHO05D002225 1.5e-09 67.4 273 31.1
MSTRG.20966 Avicennia marina HOM05D002186 ORTHO05D002225 2.0e-09 67.0 260 32.3
COL.COLO4_15629 Corchorus olitorius HOM05D002186 ORTHO05D002225 3.4e-09 66.2 268 31.7
QL09p052490 Quercus lobata HOM05D002186 ORTHO05D002225 3.4e-09 66.2 272 29.8
Migut.N00628 Erythranthe guttata HOM05D002186 ORTHO05D002225 5.8e-09 65.5 253 29.6
Dinv19181 Davidia involucrata HOM05D002186 ORTHO05D002225 7.6e-09 65.1 173 37.0
Atru.chr6.1419 Acer truncatum HOM05D002186 ORTHO05D002225 9.9e-09 64.7 266 29.3
Gohir.A07G199700 Gossypium hirsutum HOM05D002186 ORTHO05D002225 9.9e-09 64.7 266 29.3
Gohir.D08G212670 Gossypium hirsutum HOM05D002186 ORTHO05D002225 9.9e-09 64.7 278 30.2
Gorai.004G226600 Gossypium raimondii HOM05D002186 ORTHO05D002225 9.9e-09 64.7 278 30.2
PGSC0003DMG400027945 Solanum tuberosum HOM05D002186 ORTHO05D002225 9.9e-09 64.7 264 29.2
Dinv12658 Davidia involucrata HOM05D002186 ORTHO05D002225 1.3e-08 64.3 176 33.5
Sopen09g022570 Solanum pennellii HOM05D002186 ORTHO05D002225 1.7e-08 63.9 260 27.7
Gohir.A08G195300 Gossypium hirsutum HOM05D002186 ORTHO05D002225 2.2e-08 63.5 267 31.1
AT3G25070 Arabidopsis thaliana HOM05D002186 ORTHO05D002225 2.9e-08 63.2 237 30.8
TAR636G0289 Trochodendron aralioides HOM05D002186 ORTHO05D002225 2.9e-08 63.2 276 30.4
AL3G40780 Arabidopsis lyrata HOM05D002186 ORTHO05D002225 4.9e-08 62.4 231 31.2
Carub.0003s2542 Capsella rubella HOM05D002186 ORTHO05D002225 6.4e-08 62.0 231 32.5
PGSC0003DMG400020099 Solanum tuberosum HOM05D002186 ORTHO05D002225 8.4e-08 61.6 166 34.3
Aa31LG8G11940 Aethionema arabicum HOM05D002186 ORTHO05D002225 1.4e-07 60.8 219 29.7
Haze_15037 Corylus avellana HOM05D002186 ORTHO05D002225 1.4e-07 60.8 276 29.7
BcaC01g03246 Brassica carinata HOM05D002186 ORTHO05D002225 1.9e-07 60.5 233 30.0
CSS0016957 Camellia sinensis var. sinensis HOM05D002186 ORTHO05D002225 1.9e-07 60.5 265 30.6
CSS0037554 Camellia sinensis var. sinensis HOM05D002186 ORTHO05D002225 1.9e-07 60.5 265 30.6
THA.LOC104821655 Tarenaya hassleriana HOM05D002186 ORTHO05D002225 1.9e-07 60.5 233 30.9
Hma1.2p1_0149F.1_g066350 Hydrangea macrophylla HOM05D002186 ORTHO05D002225 3.2e-07 59.7 237 29.5
RcHm_v2.0_Chr6g0284211 Rosa chinensis HOM05D002186 ORTHO05D002225 3.2e-07 59.7 264 30.3
C05p60160 Brassica napus HOM05D002516 ORTHO05D002703 4.2e-07 59.3 64 54.7
CARHR101410 Cardamine hirsuta HOM05D002186 ORTHO05D002225 4.2e-07 59.3 233 29.6
FAN15G3260 Fragaria x ananassa HOM05D002186 ORTHO05D002225 5.5e-07 58.9 264 30.3
CAN.G874.2 Capsicum annuum HOM05D002186 ORTHO05D002225 7.1e-07 58.5 249 28.1
Duzib211G0360 Durio zibethinus HOM05D002186 ORTHO05D002225 7.1e-07 58.5 271 29.9
FvH4_2g18650 Fragaria vesca HOM05D002186 ORTHO05D002225 7.1e-07 58.5 264 29.9
FAN24G2024 Fragaria x ananassa HOM05D002186 ORTHO05D002225 7.1e-07 58.5 264 29.9
Solyc09g059430.3 Solanum lycopersicum HOM05D002186 ORTHO05D002225 7.1e-07 58.5 260 26.9
CiPaw.02G022900 Carya illinoinensis HOM05D002186 ORTHO05D002225 1.2e-06 57.8 256 30.5
TWI36G0241 Tripterygium wilfordii HOM05D002186 ORTHO05D002225 1.6e-06 57.4 273 28.6
A03p44020 Brassica napus HOM05D002186 ORTHO05D002225 2.1e-06 57.0 216 29.6
BcaC06g35778 Brassica carinata HOM05D002186 ORTHO05D002225 2.7e-06 56.6 229 29.3
TPR.G6437 Trifolium pratense HOM05D002186 ORTHO05D002225 4.6e-06 55.8 266 24.8
MSTRG.17997 Avicennia marina HOM05D002186 ORTHO05D002225 7.9e-06 55.1 247 30.4
Glyma.16G090700 Glycine max HOM05D002186 ORTHO05D002225 7.9e-06 55.1 123 33.3


User provided reference genes

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