Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 3.1e-295 1017.7 511 100.0
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 4.5e-294 1013.8 511 99.6
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.3e-288 995.7 528 95.8
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 5.9e-286 986.9 534 93.4
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 7.7e-286 986.5 531 94.0
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 4.0e-274 947.6 515 94.2
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.9e-253 877.9 544 82.9
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 3.3e-252 874.8 540 83.0
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 7.8e-246 853.6 478 88.7
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 7.8e-246 853.6 478 88.7
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.1e-244 849.7 483 87.8
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.5e-244 849.4 477 88.7
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 4.3e-244 847.8 477 88.5
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 7.3e-244 847.0 538 79.6
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.4e-242 842.8 534 79.2
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 5.3e-242 840.9 477 87.4
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 3.0e-237 825.1 538 77.3
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 7.4e-236 820.5 548 75.5
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 4.8e-235 817.8 540 75.9
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.1e-220 770.0 548 71.7
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.3e-205 719.2 494 71.1
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.9e-205 718.4 497 70.6
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.1e-204 716.8 557 65.9
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.3e-204 715.3 475 73.3
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.7e-204 714.5 497 70.2
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 8.2e-203 710.7 545 67.5
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 8.2e-203 710.7 475 72.6
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.8e-202 709.5 475 71.8
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 6.9e-202 707.6 526 67.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.5e-201 706.4 504 69.8
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.5e-201 706.4 479 72.0
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 5.9e-201 704.5 453 75.1
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.3e-200 703.4 544 65.3
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 3.8e-200 701.8 539 65.1
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.9e-199 699.5 529 66.0
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 5.5e-199 698.0 465 72.0
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.2e-198 696.8 550 64.0
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.6e-198 695.3 493 69.0
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 4.7e-198 694.9 475 69.9
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.4e-197 693.3 492 69.5
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 6.7e-197 691.0 475 69.7
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 6.7e-197 691.0 523 65.2
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.0e-196 689.5 457 72.2
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 3.3e-196 688.7 506 66.6
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 7.4e-196 687.6 474 71.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 7.4e-196 687.6 478 70.5
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.3e-195 686.8 497 66.8
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.7e-195 686.4 473 69.1
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.8e-195 685.6 494 67.8
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.1e-194 683.7 500 66.0
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.4e-194 683.3 473 69.8
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.8e-194 682.9 466 69.3
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 5.3e-194 681.4 543 63.5
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.6e-193 679.9 544 64.2
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 2.0e-193 679.5 501 67.1
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 2.6e-193 679.1 515 64.1
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.6e-193 679.1 497 67.4
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.9e-193 677.9 497 67.4
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.2e-192 676.0 516 64.9
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 8.5e-192 674.1 557 62.7
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 2.5e-191 672.5 532 64.1
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 3.2e-191 672.2 516 65.1
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.5e-191 671.4 459 70.4
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 5.5e-191 671.4 575 60.3
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 5.5e-191 671.4 528 64.0
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.6e-190 669.8 544 61.8
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 2.1e-190 669.5 509 65.2
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 2.7e-190 669.1 502 64.9
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 3.6e-190 668.7 544 63.4
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 3.6e-190 668.7 514 63.6
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.7e-190 668.3 463 69.1
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.4e-189 666.8 530 63.0
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.4e-189 666.8 474 67.3
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.8e-189 666.4 489 67.5
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.3e-189 666.0 502 64.9
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 3.0e-189 665.6 532 63.7
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 5.2e-189 664.8 545 62.2
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 8.8e-189 664.1 523 64.1
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.5e-188 663.3 541 62.3
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.0e-188 662.9 560 61.1
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 3.3e-188 662.1 565 60.0
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 4.4e-188 661.8 532 62.2
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 4.4e-188 661.8 473 66.8
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.8e-187 659.1 439 72.0
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.1e-186 657.1 504 64.7
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.4e-186 656.8 504 64.5
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.4e-186 656.0 451 70.3
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 2.4e-186 656.0 476 66.8
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.1e-186 655.6 496 65.9
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 4.1e-186 655.2 458 68.3
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.9e-185 651.4 487 65.3
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 2.2e-184 649.4 533 60.0
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.8e-184 648.7 535 61.9
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 8.5e-184 647.5 526 62.0
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.2e-183 645.2 450 70.7
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 3.6e-182 642.1 539 59.9
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 4.7e-182 641.7 471 65.4
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.4e-181 640.2 486 64.8
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.8e-181 639.8 478 63.6
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.8e-181 639.8 555 58.7
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.8e-181 639.8 457 67.8
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.3e-181 639.4 497 64.6
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.0e-181 639.0 450 69.8
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.0e-181 639.0 620 56.5
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.0e-181 638.6 544 60.3
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.2e-180 637.1 458 67.7
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.6e-180 636.0 471 63.9
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.3e-179 633.6 466 66.1
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.7e-179 633.3 490 63.5
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.1e-178 630.6 470 63.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 4.7e-174 615.1 644 50.6
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 8.0e-174 614.4 582 57.4
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 3.4e-172 609.0 491 64.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.9e-167 593.2 507 60.6
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 9.8e-164 580.9 498 57.8
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.9e-151 540.0 532 54.1
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 8.1e-150 534.6 363 72.2
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 6.4e-147 525.0 390 66.2
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.1e-146 524.2 467 56.7
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.2e-146 522.7 366 69.4
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.8e-141 505.0 503 53.1
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 9.9e-140 501.1 464 53.4
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 9.2e-138 494.6 475 56.4
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.9e-135 486.9 341 68.9
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.8e-134 483.0 361 65.9
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.6e-134 482.6 461 53.8
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.1e-133 481.1 361 67.0
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 8.4e-123 444.9 326 67.8
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 3.4e-116 422.9 373 56.6
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 8.2e-110 401.7 289 66.4
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 2.1e-105 387.1 348 57.8
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 8.2e-102 375.2 483 44.5
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 4.5e-100 369.4 472 44.3
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 3.2e-98 363.2 236 72.0
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 7.2e-98 362.1 329 57.1
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 6.7e-96 355.5 219 74.9
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 4.1e-93 346.3 216 75.0
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.6e-92 343.6 215 74.0
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 2.1e-89 334.0 237 70.0
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 9.7e-87 325.1 258 59.7
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 9.1e-85 318.5 218 71.1
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 6.5e-83 312.4 454 40.5
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.2e-82 308.9 222 68.0
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 8.0e-81 305.4 445 38.4
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 3.7e-78 296.6 219 63.9
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.4e-77 294.7 204 66.2
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.6e-76 290.4 221 66.5
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.8e-64 251.1 225 56.9
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 6.8e-64 249.2 266 47.7
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.1e-61 240.0 273 50.5
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 5.0e-59 233.0 220 58.2
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.0e-55 221.1 490 32.9
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.7e-54 218.0 161 62.7
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.0e-52 211.1 104 94.2
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 4.5e-52 209.9 155 69.7
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 8.3e-46 189.1 274 43.1
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.6e-44 184.9 114 78.1
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.3e-43 181.0 125 64.8
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.0e-43 180.6 125 68.0
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 8.9e-40 169.1 310 39.7
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 3.4e-39 167.2 308 39.6
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 3.4e-39 167.2 124 62.1
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 3.0e-35 154.1 93 87.1
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.1e-33 147.9 125 55.2
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 8.3e-30 136.0 88 69.3
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.4e-29 135.2 95 66.3
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 9.2e-29 132.5 76 78.9
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.0e-27 129.0 182 43.4
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.1e-27 126.7 77 77.9
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.6e-27 126.3 80 72.5
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.5e-26 124.4 102 60.8
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 4.7e-25 120.2 64 87.5
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.7e-22 111.7 64 76.6
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 3.8e-22 110.5 102 52.9
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.4e-21 107.8 71 70.4
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 4.2e-21 107.1 79 63.3
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 3.0e-19 100.9 94 47.9
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 5.1e-19 100.1 48 95.8
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 4.7e-17 93.6 80 55.0
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.1e-16 92.4 62 64.5
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 5.4e-13 80.1 64 59.4
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 7.1e-13 79.7 161 37.9
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 7.8e-12 76.3 48 72.9
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 5.1e-11 73.6 51 62.7
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.3e-10 70.5 111 42.3
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.5e-07 60.5 158 32.9
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 2.9e-06 57.8 43 55.8


User provided reference genes

Program Settings