Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 1.9e-136 489.2 250 100.0
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 2.0e-101 372.9 196 94.4
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 2.9e-92 342.4 176 97.7
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 2.9e-92 342.4 176 97.7
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 2.9e-92 342.4 176 97.7
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 4.9e-92 341.7 176 97.7
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 4.9e-92 341.7 176 97.7
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 7.1e-91 337.8 185 93.0
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 2.1e-90 336.3 208 84.6
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.7e-89 333.2 185 91.9
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.6e-87 326.6 185 89.2
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 3.6e-87 325.5 185 88.6
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 6.2e-87 324.7 185 88.6
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 2.4e-86 322.8 188 86.2
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.0e-86 322.0 185 88.1
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.8e-78 296.6 175 83.4
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 9.0e-78 294.3 175 82.9
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 2.6e-77 292.7 173 83.2
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.9e-75 286.6 175 80.0
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 3.2e-75 285.8 183 78.1
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 3.2e-75 285.8 175 80.6
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.2e-75 285.8 173 80.3
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 4.2e-75 285.4 183 78.1
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 4.2e-75 285.4 183 78.1
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 1.6e-74 283.5 175 78.3
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 6.0e-74 281.6 182 78.6
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 6.0e-74 281.6 175 79.4
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.3e-73 280.4 175 78.3
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 1.8e-73 280.0 237 64.6
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.3e-73 279.6 176 79.0
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 3.0e-73 279.3 175 77.7
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 3.0e-73 279.3 176 78.4
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 3.0e-73 279.3 208 69.7
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 3.9e-73 278.9 176 79.0
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 5.1e-73 278.5 189 72.5
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 6.7e-73 278.1 171 80.7
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 6.7e-73 278.1 175 77.7
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 8.7e-73 277.7 185 75.7
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 8.7e-73 277.7 175 78.3
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 8.7e-73 277.7 230 66.1
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.9e-72 276.6 214 68.2
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.9e-72 276.6 230 65.2
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 4.3e-72 275.4 176 78.4
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 4.3e-72 275.4 217 67.3
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 4.3e-72 275.4 175 77.7
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 5.6e-72 275.0 185 75.1
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 9.6e-72 274.2 210 68.6
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 9.6e-72 274.2 203 70.9
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 1.3e-71 273.9 183 75.4
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 1.6e-71 273.5 175 76.6
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.1e-71 273.1 172 77.9
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 2.8e-71 272.7 189 71.4
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.8e-71 272.7 174 77.0
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 4.8e-71 271.9 174 75.3
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 4.8e-71 271.9 173 78.0
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 6.2e-71 271.6 174 75.9
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 1.1e-70 270.8 175 76.0
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 1.4e-70 270.4 174 75.9
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.4e-70 270.4 181 74.6
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.8e-70 270.0 174 75.9
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.8e-70 270.0 175 74.9
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.8e-70 270.0 175 76.0
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 3.1e-70 269.2 171 76.0
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 4.0e-70 268.9 175 75.4
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 4.0e-70 268.9 188 72.3
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 4.0e-70 268.9 175 74.3
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 5.3e-70 268.5 139 96.4
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 6.9e-70 268.1 172 76.7
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 9.0e-70 267.7 218 65.1
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.5e-69 266.9 174 75.9
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 2.6e-69 266.2 175 73.7
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 2.6e-69 266.2 174 74.7
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 3.4e-69 265.8 174 74.1
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 4.5e-69 265.4 218 64.7
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 5.8e-69 265.0 175 74.3
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 9.9e-69 264.2 211 66.8
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 2.2e-68 263.1 175 73.1
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 2.9e-68 262.7 174 73.0
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 3.8e-68 262.3 206 66.5
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 4.9e-68 261.9 220 65.9
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 6.4e-68 261.5 174 74.1
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 6.4e-68 261.5 176 73.3
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 8.4e-68 261.2 176 73.3
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 8.4e-68 261.2 216 63.9
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.1e-67 260.8 175 74.9
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.1e-67 260.8 223 63.7
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 1.4e-67 260.4 175 72.0
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.4e-67 260.4 174 72.4
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 1.9e-67 260.0 176 72.7
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.2e-67 259.2 210 64.8
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 3.2e-67 259.2 175 74.3
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 4.2e-67 258.8 213 62.4
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 5.5e-67 258.5 175 73.7
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 5.5e-67 258.5 174 71.8
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 5.5e-67 258.5 176 71.6
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 7.1e-67 258.1 174 72.4
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 7.1e-67 258.1 201 67.2
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 9.3e-67 257.7 185 69.2
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 1.2e-66 257.3 188 69.1
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 2.7e-66 256.1 208 64.9
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 4.6e-66 255.4 187 69.0
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 6.0e-66 255.0 175 71.4
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 7.9e-66 254.6 188 68.1
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 1.0e-65 254.2 215 63.3
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.8e-65 253.4 174 71.8
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.3e-65 253.1 175 68.6
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 5.1e-65 251.9 202 65.3
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 5.1e-65 251.9 219 62.1
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 6.7e-65 251.5 213 62.0
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 8.7e-65 251.1 171 70.2
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 5.6e-64 248.4 213 62.9
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 8.1e-63 244.6 173 69.4
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 2.6e-61 239.6 214 60.3
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 5.8e-61 238.4 176 69.9
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 2.2e-60 236.5 190 65.8
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.9e-59 233.4 143 79.7
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 2.5e-59 233.0 172 64.5
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 4.6e-58 228.8 188 62.2
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.0e-57 227.6 188 61.7
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.8e-57 226.9 189 59.8
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 6.3e-55 218.4 201 57.7
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 6.9e-54 214.9 183 61.2
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 7.6e-53 211.5 106 98.1
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 7.2e-51 204.9 106 96.2
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.9e-48 196.8 178 54.5
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 3.3e-48 196.1 186 52.7
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.6e-47 193.7 171 52.6
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 4.5e-45 185.7 183 56.3
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.5e-44 181.8 174 51.1
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 9.4e-43 177.9 206 50.0
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 3.6e-42 176.0 107 88.8
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 7.9e-42 174.9 175 48.0
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.0e-41 174.5 190 52.1
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.8e-38 163.7 183 52.5
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 3.1e-38 162.9 106 76.4
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 1.7e-36 157.1 214 44.9
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 8.5e-36 154.8 167 50.9
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 2.2e-31 140.2 172 48.8
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 2.8e-31 139.8 103 80.6
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 3.7e-31 139.4 108 63.0
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.3e-28 131.0 106 66.0
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 7.2e-27 125.2 69 89.9
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 9.4e-27 124.8 102 58.8
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.6e-26 122.9 95 62.1
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 4.7e-26 122.5 103 59.2
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 4.7e-26 122.5 67 92.5
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.4e-25 120.9 102 59.8
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 1.8e-25 120.6 64 93.8
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.0e-25 119.4 111 54.1
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 5.7e-24 115.5 71 85.9
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.7e-23 114.0 79 67.1
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 8.2e-23 111.7 66 84.8
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 2.7e-18 96.7 49 98.0
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 6.1e-18 95.5 58 84.5
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 5.7e-16 89.0 70 62.9
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 5.4e-14 82.4 45 88.9
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.5e-11 74.3 68 52.9
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 3.6e-10 69.7 36 80.6
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 4.7e-10 69.3 65 52.3
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 5.7e-08 62.4 70 42.9
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.3e-07 61.2 54 48.1
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 1.7e-07 60.8 56 50.0
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-07 60.1 67 44.8
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 2.4e-06 57.0 67 47.8


User provided reference genes

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