Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 2.6e-144 515.4 260 100.0
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 6.6e-23 112.1 57 96.5
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.2e-16 91.3 74 68.9
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 1.2e-16 91.3 74 67.6
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 3.5e-16 89.7 55 83.6
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 3.5e-16 89.7 53 86.8
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 6.0e-16 89.0 74 67.6
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 6.0e-16 89.0 74 67.6
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 7.8e-16 88.6 74 66.2
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.0e-15 88.2 55 81.8
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.7e-15 87.4 55 81.8
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 2.3e-15 87.0 74 66.2
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 4.3e-14 82.8 55 80.0
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 3.6e-13 79.7 55 74.5
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 3.6e-13 79.7 54 79.6
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 4.9e-10 69.3 54 63.0
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 6.4e-10 68.9 56 60.7
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 6.4e-10 68.9 56 60.7
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 6.4e-10 68.9 108 44.4
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 6.4e-10 68.9 83 48.2
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.4e-09 67.8 83 47.0
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.4e-09 67.8 56 60.7
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 2.4e-09 67.0 56 64.3
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 3.2e-09 66.6 56 60.7
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 4.1e-09 66.2 56 58.9
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 5.4e-09 65.9 56 58.9
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.4e-09 65.9 57 56.1
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.4e-09 65.9 57 56.1
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 7.0e-09 65.5 74 52.7
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 7.0e-09 65.5 56 57.1
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 9.2e-09 65.1 75 48.0
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 9.2e-09 65.1 56 58.9
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.2e-08 64.7 57 56.1
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 1.2e-08 64.7 83 45.8
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 1.6e-08 64.3 56 58.9
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 2.1e-08 63.9 58 60.3
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 2.7e-08 63.5 57 59.6
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 4.6e-08 62.8 46 63.0
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 4.6e-08 62.8 46 63.0
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 4.6e-08 62.8 59 54.2
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 7.8e-08 62.0 56 55.4
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 7.8e-08 62.0 56 55.4
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.3e-07 61.2 45 64.4
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 1.3e-07 61.2 99 41.4
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.7e-07 60.8 122 36.9
BcaB04g17903 Brassica carinata HOM05D004619 ORTHO05D032420 2.3e-07 60.5 54 61.1
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 2.3e-07 60.5 107 40.2
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 5.0e-07 59.3 45 62.2
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 8.6e-07 58.5 45 62.2
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 1.1e-06 58.2 56 51.8
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.5e-06 57.8 45 64.4
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 1.9e-06 57.4 56 55.4
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 1.9e-06 57.4 56 53.6
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 1.9e-06 57.4 45 62.2
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 2.5e-06 57.0 103 41.7
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 2.5e-06 57.0 56 57.1
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 2.5e-06 57.0 38 78.9
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 3.3e-06 56.6 52 57.7
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 4.3e-06 56.2 45 62.2
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 5.6e-06 55.8 74 47.3
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 5.6e-06 55.8 48 64.6
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 5.6e-06 55.8 35 82.9
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 9.5e-06 55.1 38 76.3
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 9.5e-06 55.1 56 48.2
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 9.5e-06 55.1 56 48.2
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 9.5e-06 55.1 38 76.3


User provided reference genes

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