Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22465 Brassica carinata HOM05D000113 ORTHO05D016431 9.2e-37 156.4 79 100.0
BcaC03g17455 Brassica carinata HOM05D000113 ORTHO05D006161 7.3e-18 93.6 90 64.4
BolC8t47940H Brassica oleracea HOM05D000113 ORTHO05D027077 2.1e-17 92.0 77 68.8
C09p18980 Brassica napus HOM05D000113 ORTHO05D016431 2.8e-17 91.7 47 95.7
A02p35320 Brassica napus HOM05D000113 ORTHO05D006161 3.6e-17 91.3 90 62.2
BraA02t08535Z Brassica rapa HOM05D000113 ORTHO05D006161 3.6e-17 91.3 90 62.2
BcaC03g17457 Brassica carinata HOM05D000113 ORTHO05D006161 8.1e-17 90.1 90 61.1
C02p54060 Brassica napus HOM05D000113 ORTHO05D006161 8.1e-17 90.1 90 61.1
BolC2t11468H Brassica oleracea HOM05D000113 ORTHO05D006161 8.1e-17 90.1 90 61.1
BcaC07g37590 Brassica carinata HOM05D000113 ORTHO05D006161 1.4e-16 89.4 77 67.5
Sp7g11220 Schrenkiella parvula HOM05D000113 ORTHO05D006161 5.3e-16 87.4 88 61.4
AL8G14950 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 6.9e-16 87.0 88 60.2
AT1G33390 Arabidopsis thaliana HOM05D000113 ORTHO05D006161 6.9e-16 87.0 88 60.2
Carub.0001s3158 Capsella rubella HOM05D000113 ORTHO05D006161 6.9e-16 87.0 88 60.2
CARHR032810 Cardamine hirsuta HOM05D000113 ORTHO05D006161 1.5e-15 85.9 88 59.1
AL1G47770 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 3.4e-15 84.7 88 59.1
Thhalv10024243m.g Eutrema salsugineum HOM05D000113 ORTHO05D006161 4.5e-15 84.3 93 58.1
Aa31LG1G28830 Aethionema arabicum HOM05D000113 ORTHO05D006161 1.3e-14 82.8 85 61.2
C04p07740 Brassica napus HOM05D000113 ORTHO05D016431 3.8e-14 81.3 39 100.0
BolC4t22390H Brassica oleracea HOM05D000113 ORTHO05D016431 3.8e-14 81.3 39 100.0
THA.LOC104802184 Tarenaya hassleriana HOM05D000113 ORTHO05D006161 2.4e-13 78.6 85 57.6
GSVIVG01028054001 Vitis vinifera HOM05D000113 ORTHO05D006161 1.6e-12 75.9 85 55.3
QL12p027746 Quercus lobata HOM05D000113 ORTHO05D006161 3.5e-12 74.7 85 52.9
Gohir.A07G126300 Gossypium hirsutum HOM05D000113 ORTHO05D006161 6.0e-12 73.9 94 51.1
CSS0016737 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 1.8e-11 72.4 85 52.9
Cpa.g.sc151.33 Carica papaya HOM05D000113 ORTHO05D006161 2.3e-11 72.0 95 49.5
CANSAT80G0530 Cannabis sativa HOM05D000113 ORTHO05D006161 3.9e-11 71.2 85 51.8
MD05G1017800 Malus domestica HOM05D000113 ORTHO05D006161 3.9e-11 71.2 85 51.8
COL.COLO4_23301 Corchorus olitorius HOM05D000113 ORTHO05D006161 5.1e-11 70.9 85 52.9
Gohir.D07G130400 Gossypium hirsutum HOM05D000113 ORTHO05D006161 5.1e-11 70.9 85 52.9
MD04G1241500 Malus domestica HOM05D000113 ORTHO05D006161 5.1e-11 70.9 85 51.8
Thecc.10G083300 Theobroma cacao HOM05D000113 ORTHO05D006161 5.1e-11 70.9 85 52.9
Atru.chr5.1086 Acer truncatum HOM05D000113 ORTHO05D006161 6.7e-11 70.5 85 51.8
DCAR_012372 Daucus carota HOM05D000113 ORTHO05D006161 6.7e-11 70.5 85 51.8
TWI59G0818 Tripterygium wilfordii HOM05D000113 ORTHO05D006161 6.7e-11 70.5 88 50.0
Duzib138G1872 Durio zibethinus HOM05D000113 ORTHO05D006161 8.7e-11 70.1 85 51.8
Lj5A370T56 Lonicera japonica HOM05D000113 ORTHO05D006161 8.7e-11 70.1 85 50.6
Cfa005867 Carpinus fangiana HOM05D000113 ORTHO05D006161 1.1e-10 69.7 85 50.6
Ciclev10018519m.g Citrus clementina HOM05D000113 ORTHO05D006161 1.1e-10 69.7 95 49.5
Haze_04980 Corylus avellana HOM05D001493 ORTHO05D006161 1.1e-10 69.7 85 50.6
Hma1.2p1_0212F.1_g090260 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 1.1e-10 69.7 85 51.8
CiPaw.07G112500 Carya illinoinensis HOM05D000113 ORTHO05D006161 1.5e-10 69.3 85 50.6
Lj2C1199T13 Lonicera japonica HOM05D000113 ORTHO05D006161 1.5e-10 69.3 85 50.6
Os02g0736600 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D006161 1.5e-10 69.3 94 48.9
RcHm_v2.0_Chr4g0407811 Rosa chinensis HOM05D000113 ORTHO05D006161 1.5e-10 69.3 85 50.6
Psat7g233480 Pisum sativum HOM05D000113 ORTHO05D006161 1.9e-10 68.9 85 50.6
Actinidia25823 Actinidia chinensis HOM05D000113 ORTHO05D006161 2.5e-10 68.6 85 51.8
Manes.01G223000 Manihot esculenta HOM05D000113 ORTHO05D006161 2.5e-10 68.6 88 50.0
TAR633G2709 Trochodendron aralioides HOM05D000113 ORTHO05D006161 2.5e-10 68.6 85 51.8
Ca_15122_v3 Cicer arietinum L. HOM05D000113 ORTHO05D006161 3.3e-10 68.2 85 50.6
Sc15g0001890 Simmondsia chinensis HOM05D000113 ORTHO05D006161 3.3e-10 68.2 85 49.4
Sc26g0003690 Simmondsia chinensis HOM05D000113 ORTHO05D006161 3.3e-10 68.2 85 49.4
AUR62008717 Chenopodium quinoa HOM05D000113 ORTHO05D006161 4.3e-10 67.8 85 51.8
AUR62025517 Chenopodium quinoa HOM05D000113 ORTHO05D006161 4.3e-10 67.8 85 51.8
DCAR_018927 Daucus carota HOM05D000310 ORTHO05D006161 4.3e-10 67.8 84 50.0
Gorai.001G141100 Gossypium raimondii HOM05D000113 ORTHO05D006161 4.3e-10 67.8 85 51.8
TPR.G9858 Trifolium pratense HOM05D000113 ORTHO05D006161 4.3e-10 67.8 88 47.7
TAR362G0332 Trochodendron aralioides HOM05D000113 ORTHO05D006161 4.3e-10 67.8 85 51.8
Nn5g26851 Nelumbo nucifera HOM05D000113 ORTHO05D006161 5.6e-10 67.4 85 49.4
SEGI_29750 Sequoiadendron giganteum HOM05D000113 ORTHO05D006161 5.6e-10 67.4 86 48.8
Atru.chr9.1267 Acer truncatum HOM05D000113 ORTHO05D006161 7.4e-10 67.0 85 50.6
arahy.Tifrunner.gnm1.ann1.M111ST Arachis hypogaea HOM05D000113 ORTHO05D006161 7.4e-10 67.0 85 49.4
CSS0034422 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 7.4e-10 67.0 94 45.7
Dinv42094 Davidia involucrata HOM05D000113 ORTHO05D006161 7.4e-10 67.0 85 49.4
MBI04_g31155_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D006161 7.4e-10 67.0 85 49.4
SalBow6G1114 Salvia bowleyana HOM05D000113 ORTHO05D006161 7.4e-10 67.0 85 48.2
EL10Ac6g14998 Beta vulgaris HOM05D000113 ORTHO05D006161 9.6e-10 66.6 85 47.1
MELO3C015960.2 Cucumis melo HOM05D000113 ORTHO05D006161 9.6e-10 66.6 94 50.0
CsaV3_7G029610 Cucumis sativus L. HOM05D000113 ORTHO05D006161 9.6e-10 66.6 94 50.0
HanXRQChr04g0105431 Helianthus annuus HOM05D000113 ORTHO05D006161 9.6e-10 66.6 85 50.6
Medtr4g023590 Medicago truncatula HOM05D000113 ORTHO05D006161 9.6e-10 66.6 85 48.2
Rhsim01G0287700 Rhododendron simsii HOM05D000113 ORTHO05D006161 9.6e-10 66.6 86 50.0
vmacro04631 Vaccinium macrocarpon HOM05D000113 ORTHO05D006161 9.6e-10 66.6 85 49.4
Potri.002G201400 Populus trichocarpa HOM05D000113 ORTHO05D006161 1.3e-09 66.2 85 50.6
CAN.G986.24 Capsicum annuum HOM05D000113 ORTHO05D000001 1.6e-09 65.9 85 48.2
FvH4_3g40090 Fragaria vesca HOM05D000113 ORTHO05D006161 1.6e-09 65.9 85 48.2
FAN16G3510 Fragaria x ananassa HOM05D000113 ORTHO05D006161 1.6e-09 65.9 85 48.2
Lalb_Chr10g0099391 Lupinus albus HOM05D000113 ORTHO05D006161 1.6e-09 65.9 85 49.4
Prupe.1G193500 Prunus persica HOM05D000113 ORTHO05D006161 1.6e-09 65.9 85 49.4
Nitab4.5_0004367g0140 Nicotiana tabacum HOM05D000113 ORTHO05D006161 2.1e-09 65.5 85 48.2
Peaxi162Scf00150g00139 Petunia axillaris HOM05D000113 ORTHO05D006161 2.1e-09 65.5 85 48.2
Eucgr.E04059 Eucalyptus grandis HOM05D000113 ORTHO05D006161 2.8e-09 65.1 85 48.2
PSO339G3312 Papaver somniferum HOM05D000113 ORTHO05D006161 2.8e-09 65.1 88 48.9
PGR044G2751 Punica granatum HOM05D000113 ORTHO05D006161 2.8e-09 65.1 85 48.2
PGSC0003DMG401000100 Solanum tuberosum HOM05D000113 ORTHO05D006161 2.8e-09 65.1 93 46.2
AagrBONN_evm.TU.Sc2ySwM_344.808 Anthoceros agrestis HOM05D000482 ORTHO05D000349 3.7e-09 64.7 86 47.7
arahy.Tifrunner.gnm1.ann1.SIBB7F Arachis hypogaea HOM05D000113 ORTHO05D006161 3.7e-09 64.7 85 48.2
Solyc01g095710.3 Solanum lycopersicum HOM05D000113 ORTHO05D006161 3.7e-09 64.7 93 46.2
Sopen01g039450 Solanum pennellii HOM05D000113 ORTHO05D006161 3.7e-09 64.7 93 46.2
Thecc.01G306300 Theobroma cacao HOM05D000113 ORTHO05D006161 3.7e-09 64.7 85 50.6
ECA248G0290 Erigeron canadensis HOM05D000113 ORTHO05D006161 4.8e-09 64.3 97 47.4
PSO675G6280 Papaver somniferum HOM05D000113 ORTHO05D006161 4.8e-09 64.3 88 48.9
ClCG09G005490 Citrullus lanatus HOM05D000113 ORTHO05D006161 6.2e-09 63.9 94 48.9
Cc08_g12990 Coffea canephora HOM05D000113 ORTHO05D006161 6.2e-09 63.9 85 48.2
Migut.D00126 Erythranthe guttata HOM05D000113 ORTHO05D006161 6.2e-09 63.9 93 48.4
Lj4g0011992 Lotus japonicus HOM05D000113 ORTHO05D006161 6.2e-09 63.9 85 48.2
Lj2g0016628 Lotus japonicus HOM05D000113 ORTHO05D006161 8.1e-09 63.5 85 48.2
Prupe.1G445700 Prunus persica HOM05D000113 ORTHO05D006161 8.1e-09 63.5 86 47.7
ATR0307G121 Amborella trichopoda HOM05D000113 ORTHO05D006161 1.1e-08 63.2 85 48.2
Hund05453 Selenicereus undatus HOM05D000113 ORTHO05D006161 1.1e-08 63.2 85 49.4
Lsat_1_v5_gn_3_139220 Lactuca sativa HOM05D000113 ORTHO05D006161 1.4e-08 62.8 85 52.9
FAN21G3024 Fragaria x ananassa HOM05D000113 ORTHO05D006161 1.8e-08 62.4 85 47.1
HPP92_011861 Vanilla planifolia HOM05D000113 ORTHO05D006161 1.8e-08 62.4 85 49.4
MSTRG.21654 Avicennia marina HOM05D000113 ORTHO05D006161 2.4e-08 62.0 85 44.7
CDE07G1855 Ceratophyllum demersum HOM05D000113 ORTHO05D006161 2.4e-08 62.0 85 47.1
Oeu008340.1 Olea europaea HOM05D000113 ORTHO05D006161 2.4e-08 62.0 94 45.7
VMungo0331G1928 Vigna mungo HOM05D001793 ORTHO05D006161 3.1e-08 61.6 85 50.6
Glyma.01G142700 Glycine max HOM05D000113 ORTHO05D006161 4.0e-08 61.2 85 50.6
Glyma.03G024000 Glycine max HOM05D000113 ORTHO05D006161 4.0e-08 61.2 85 50.6
Sed0026170 Sechium edule HOM05D000113 ORTHO05D006161 4.0e-08 61.2 85 49.4
SGA_v2.0_scaffold334G49027 Striga asiatica HOM05D000113 ORTHO05D006161 5.3e-08 60.8 85 45.9
BolC2t10426H Brassica oleracea HOM05D000113 ORTHO05D027077 9.0e-08 60.1 67 56.7
Phvul.010G084200 Phaseolus vulgaris HOM05D000113 ORTHO05D006161 9.0e-08 60.1 85 49.4
Mapoly0044s0018 Marchantia polymorpha HOM05D000113 ORTHO05D006161 1.5e-07 59.3 86 44.2
Zm00001eb253900 Zea mays HOM05D000113 ORTHO05D006161 2.0e-07 58.9 94 44.7
EL10Ac4g07792 Beta vulgaris HOM05D000113 ORTHO05D006161 2.6e-07 58.5 85 44.7
Rhsim03G0106700 Rhododendron simsii HOM05D000113 ORTHO05D006161 3.4e-07 58.2 82 48.8
RcHm_v2.0_Chr7g0220161 Rosa chinensis HOM05D000113 ORTHO05D006161 3.4e-07 58.2 83 42.2
Pp3c3_18630 Physcomitrium patens HOM05D000113 ORTHO05D006161 1.7e-06 55.8 84 44.0
RcHm_v2.0_Chr7g0220481 Rosa chinensis HOM05D000113 ORTHO05D016431 1.7e-06 55.8 83 39.8
Rhsim09G0109600 Rhododendron simsii HOM05D000113 ORTHO05D006161 2.2e-06 55.5 81 48.1
SHI19097 Sapria himalayana HOM05D000113 ORTHO05D006161 2.2e-06 55.5 85 42.4
SMO367G1023 Selaginella moellendorffii HOM05D000113 ORTHO05D006161 2.2e-06 55.5 86 41.9
FAN11G2310 Fragaria x ananassa HOM05D000113 ORTHO05D006161 6.4e-06 53.9 113 36.3
Hma1.2p1_0098F.1_g048470 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 8.4e-06 53.5 70 50.0
RcHm_v2.0_Chr2g0168461 Rosa chinensis HOM05D000113 ORTHO05D016431 8.4e-06 53.5 83 41.0


User provided reference genes

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