Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 4.5e-130 468.0 246 100.0
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 2.4e-123 445.7 246 95.9
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 6.9e-123 444.1 247 96.0
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 3.2e-120 435.3 254 92.9
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 4.2e-112 408.3 213 99.5
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 1.8e-107 392.9 245 85.7
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 3.7e-100 368.6 248 79.8
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 2.6e-93 345.9 248 75.8
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 2.4e-91 339.3 249 72.3
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 5.3e-91 338.2 247 75.3
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 1.0e-89 334.0 247 75.3
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 1.0e-89 334.0 247 75.3
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 1.0e-89 334.0 247 75.3
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 5.0e-89 331.6 238 76.9
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 1.9e-88 329.7 216 82.4
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 2.2e-84 316.2 238 72.3
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 3.0e-78 295.8 216 75.9
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 2.2e-73 279.6 217 71.9
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 5.7e-69 265.0 215 70.2
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 1.1e-67 260.8 239 59.8
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 2.7e-50 203.0 238 49.6
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 2.6e-45 186.4 272 42.3
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 4.0e-38 162.5 237 44.7
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 8.9e-38 161.4 237 44.3
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 2.6e-37 159.8 222 42.8
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 5.8e-37 158.7 241 40.2
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 4.9e-36 155.6 235 42.1
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 2.1e-34 150.2 202 43.6
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 2.7e-34 149.8 239 41.8
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 6.0e-34 148.7 180 47.2
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 1.7e-33 147.1 186 46.2
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 5.1e-33 145.6 206 45.6
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 1.1e-32 144.4 181 47.5
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 2.5e-32 143.3 243 41.2
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 3.3e-32 142.9 230 39.6
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 3.3e-32 142.9 209 42.6
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 4.3e-32 142.5 211 43.6
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 5.6e-32 142.1 226 40.7
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 5.6e-32 142.1 181 47.0
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 1.6e-31 140.6 216 40.3
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 3.6e-31 139.4 213 39.9
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 8.1e-31 138.3 199 40.7
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 1.4e-30 137.5 234 38.9
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 1.8e-30 137.1 239 39.3
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 4.0e-30 136.0 178 45.5
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 4.0e-30 136.0 220 38.6
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 6.9e-30 135.2 242 38.4
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 8.9e-30 134.8 200 42.5
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 8.9e-30 134.8 238 37.4
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 8.9e-30 134.8 188 44.1
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 1.2e-29 134.4 204 45.1
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 1.5e-29 134.0 211 39.3
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 2.6e-29 133.3 187 41.2
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.4e-29 132.9 174 45.4
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 1.3e-28 131.0 238 37.8
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 1.3e-28 131.0 234 37.6
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 1.7e-28 130.6 241 40.2
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 2.9e-28 129.8 205 42.4
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 2.9e-28 129.8 207 41.5
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 6.4e-28 128.6 179 44.1
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 6.4e-28 128.6 216 39.8
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 8.4e-28 128.3 202 38.1
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 1.4e-27 127.5 169 46.7
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 1.9e-27 127.1 189 42.9
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 1.9e-27 127.1 209 38.8
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 2.4e-27 126.7 216 41.2
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 4.2e-27 125.9 187 40.1
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 1.6e-26 124.0 243 37.4
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 2.7e-26 123.2 203 37.9
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 4.6e-26 122.5 242 34.7
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 7.8e-26 121.7 189 40.2
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 1.0e-25 121.3 180 41.1
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 1.3e-25 120.9 178 41.0
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 2.3e-25 120.2 145 49.7
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 3.0e-25 119.8 250 36.4
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 3.0e-25 119.8 239 38.5
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 3.9e-25 119.4 177 41.8
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 5.1e-25 119.0 182 40.1
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 5.1e-25 119.0 213 39.0
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 6.6e-25 118.6 185 42.2
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 2.5e-24 116.7 195 40.5
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 3.3e-24 116.3 193 40.4
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 3.3e-24 116.3 186 42.5
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 9.6e-24 114.8 186 41.9
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 1.3e-23 114.4 215 38.6
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 2.8e-23 113.2 198 37.4
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 3.6e-23 112.8 217 35.5
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 3.6e-23 112.8 182 39.6
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 4.8e-23 112.5 177 39.5
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 6.2e-23 112.1 177 39.5
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 4.0e-22 109.4 239 32.6
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 7.6e-21 105.1 177 37.9
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 8.7e-17 91.7 209 32.5
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 8.7e-17 91.7 161 40.4
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 8.7e-17 91.7 199 36.7
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 1.1e-16 91.3 208 33.7
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 1.3e-15 87.8 149 37.6
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 1.3e-15 87.8 156 38.5
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 4.8e-15 85.9 85 57.6
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 3.1e-14 83.2 108 44.4
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 4.0e-14 82.8 128 40.6
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 3.2e-11 73.2 209 29.7
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.2e-10 71.2 234 31.6
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 2.1e-10 70.5 211 32.7
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 3.9e-09 66.2 115 34.8
SEGI_05727 Sequoiadendron giganteum HOM05D010622 ORTHO05D011909 3.7e-07 59.7 144 32.6
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 6.2e-07 58.9 166 33.7
Lj5g0022580 Lotus japonicus HOM05D001604 ORTHO05D001432 9.0e-06 55.1 121 33.9


User provided reference genes

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