Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 4.0e-161 571.6 346 100.0
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.2e-160 570.1 346 99.7
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 3.5e-157 558.5 342 98.8
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 6.4e-151 537.7 346 96.0
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 6.4e-151 537.7 346 96.0
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 9.6e-147 523.9 346 91.6
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 3.1e-137 492.3 354 84.7
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 2.6e-136 489.2 356 86.5
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.1e-133 479.6 353 84.4
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 3.6e-133 478.8 346 84.1
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 6.1e-133 478.0 353 84.1
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.5e-131 473.4 356 81.7
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.2e-128 463.8 356 81.7
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 2.6e-120 436.0 356 80.3
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 3.4e-120 435.6 353 80.2
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.1e-118 430.6 346 82.1
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 1.2e-117 427.2 348 72.4
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 2.6e-115 419.5 346 76.3
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 3.8e-111 405.6 336 79.2
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 7.0e-97 358.2 350 62.9
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.2e-93 347.4 312 63.8
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 4.7e-93 345.5 314 63.7
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.2e-92 342.0 337 61.7
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.2e-91 340.9 337 60.8
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 9.8e-91 337.8 307 64.5
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.3e-90 337.4 317 63.4
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 3.7e-90 335.9 325 55.7
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 3.7e-90 335.9 333 59.5
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.1e-89 334.3 363 56.5
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.1e-89 334.3 318 62.9
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 1.1e-89 334.3 337 61.7
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.4e-89 334.0 333 55.6
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 3.1e-89 332.8 312 60.9
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 7.0e-89 331.6 291 63.9
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 7.0e-89 331.6 287 67.6
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 9.2e-89 331.3 327 63.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.2e-88 330.9 318 61.3
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.2e-88 330.9 317 60.3
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.2e-88 330.9 305 60.7
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 2.0e-88 330.1 330 57.6
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 3.5e-88 329.3 337 55.2
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 3.5e-88 329.3 312 59.9
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 3.5e-88 329.3 298 60.4
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.5e-88 328.9 343 63.8
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 5.9e-88 328.6 314 64.3
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 5.9e-88 328.6 301 62.8
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 1.7e-87 327.0 223 71.7
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 3.8e-87 325.9 358 62.3
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 6.6e-87 325.1 305 58.4
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 8.6e-87 324.7 317 62.1
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 4.3e-86 322.4 221 71.5
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 9.5e-86 321.2 341 54.3
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 2.8e-85 319.7 290 71.0
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 2.8e-85 319.7 303 62.7
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.7e-85 318.9 313 62.0
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 8.0e-85 318.2 310 60.0
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.0e-84 317.8 282 61.3
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 1.4e-84 317.4 294 58.8
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.4e-84 317.4 322 58.1
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.8e-84 317.0 306 64.1
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 5.2e-84 315.5 254 68.1
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 6.8e-84 315.1 259 63.3
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 8.9e-84 314.7 332 54.5
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.2e-83 314.3 297 60.3
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.5e-83 313.9 225 70.2
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 3.4e-83 312.8 305 60.7
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 4.4e-83 312.4 308 62.0
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 4.4e-83 312.4 288 56.9
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.8e-83 312.0 321 58.6
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 5.8e-83 312.0 278 70.1
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.3e-82 310.8 309 61.5
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.9e-82 309.7 271 59.8
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 8.3e-82 308.1 300 54.3
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 2.4e-81 306.6 318 59.4
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 2.4e-81 306.6 230 67.4
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 4.1e-81 305.8 266 65.8
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 5.4e-81 305.4 309 60.2
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.2e-80 304.3 252 61.9
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.0e-80 303.5 316 63.0
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 6.0e-80 302.0 220 69.5
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 7.8e-80 301.6 326 54.0
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.7e-79 300.4 227 67.8
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 2.3e-79 300.1 229 67.2
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 6.6e-79 298.5 301 67.1
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 1.5e-78 297.4 221 67.9
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 2.5e-78 296.6 310 60.0
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.2e-77 294.3 300 59.7
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.8e-77 293.1 310 64.5
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 3.6e-77 292.7 310 64.5
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.6e-77 292.7 310 64.5
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 6.2e-77 292.0 292 57.5
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.8e-76 290.4 281 68.0
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.8e-76 290.4 363 52.6
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 4.0e-76 289.3 272 69.9
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 4.0e-76 289.3 304 57.6
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 6.8e-76 288.5 271 68.3
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.0e-75 287.0 295 56.9
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 9.8e-75 284.6 220 63.6
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 2.9e-74 283.1 289 64.0
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 8.3e-74 281.6 313 63.3
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 5.4e-73 278.9 248 60.9
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.0e-71 274.6 285 55.1
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 1.3e-71 274.2 273 61.5
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.1e-70 271.2 253 62.5
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 7.3e-70 268.5 267 55.8
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 2.8e-69 266.5 269 54.6
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.6e-62 242.3 156 71.2
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 3.6e-61 239.6 271 54.2
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 7.6e-59 231.9 282 48.6
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 3.8e-58 229.6 281 48.4
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 9.2e-57 224.9 233 51.1
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 6.0e-56 222.2 267 56.6
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 5.6e-54 215.7 132 78.0
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.6e-53 214.2 191 52.9
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.1e-49 201.4 286 41.3
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.2e-48 198.0 266 47.7
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 2.4e-44 183.7 135 62.2
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 5.8e-43 179.1 112 77.7
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.1e-41 174.9 329 43.8
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 8.1e-37 158.7 177 45.2
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.3e-36 156.0 190 42.1
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 2.7e-32 143.7 90 75.6
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 2.7e-32 143.7 92 73.9
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 2.5e-30 137.1 271 36.2
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.2e-27 128.3 188 42.6
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-22 111.7 215 28.8
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 3.3e-22 110.2 198 32.3
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.1e-20 105.1 65 75.4
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 3.4e-19 100.1 170 54.7
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 4.2e-17 93.2 104 48.1
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 4.1e-12 76.6 187 28.3
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.0e-11 74.3 191 27.2
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 1.7e-10 71.2 232 25.0
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 1.1e-09 68.6 204 26.5
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 7.2e-09 65.9 64 54.7
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.6e-08 64.7 43 72.1
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 4.7e-08 63.2 96 29.2
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 3.9e-07 60.1 118 31.4


User provided reference genes

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