Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 0.0e+00 1987.6 1275 100.0
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 0.0e+00 1981.1 1275 99.7
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 0.0e+00 1927.1 1279 97.8
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 0.0e+00 1863.6 1279 94.9
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 0.0e+00 1863.6 1279 94.9
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 0.0e+00 1718.7 1288 87.3
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 0.0e+00 1473.0 1382 74.0
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 0.0e+00 1436.8 1353 74.1
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 0.0e+00 1431.0 1367 70.6
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 0.0e+00 1420.6 1379 74.2
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 0.0e+00 1412.5 1350 73.4
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 0.0e+00 1399.4 1368 68.6
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 0.0e+00 1253.0 1349 68.0
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 0.0e+00 1105.1 1398 57.8
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 7.9e-247 858.2 1222 51.0
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 5.0e-233 812.4 1459 48.4
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 6.1e-231 805.4 1432 47.3
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 5.2e-230 802.4 1442 45.1
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 3.1e-227 793.1 1461 44.1
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 3.2e-224 783.1 1444 47.0
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 1.2e-223 781.2 1448 44.7
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 6.1e-223 778.9 1397 45.7
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.3e-220 771.2 1424 48.7
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 3.1e-219 766.5 1417 45.1
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 5.4e-219 765.8 1414 42.5
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 2.0e-218 763.8 1458 43.3
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 2.0e-218 763.8 1425 44.1
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 4.5e-218 762.7 1431 44.4
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 1.0e-217 761.5 1424 49.4
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.3e-217 761.1 1423 42.1
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.9e-217 760.0 1422 42.2
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.1e-216 758.1 1420 42.5
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 1.1e-216 758.1 1438 44.4
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 1.5e-216 757.7 1422 42.7
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 2.8e-215 753.4 1513 43.6
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 4.7e-215 752.7 1487 43.4
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.8e-214 750.7 1479 44.6
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 3.4e-213 746.5 1401 48.0
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 1.4e-211 741.1 1448 41.8
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 3.2e-211 740.0 1472 45.6
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 1.6e-210 737.6 1434 46.0
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.5e-210 736.5 1447 42.4
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 3.5e-210 736.5 1476 42.3
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 4.5e-210 736.1 1486 46.1
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 4.5e-210 736.1 1455 42.7
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 3.3e-208 729.9 1434 46.0
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.2e-207 728.0 1451 41.8
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 1.0e-206 724.9 1466 44.1
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 1.8e-206 724.2 1477 41.2
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 1.8e-206 724.2 1471 42.5
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.1e-203 714.9 1461 40.8
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 2.7e-202 710.3 1465 43.2
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 3.5e-202 709.9 1506 42.7
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 3.0e-201 706.8 1506 41.6
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 5.0e-201 706.1 1461 46.3
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 8.6e-201 705.3 1448 41.2
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 1.2e-199 701.4 1527 43.7
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 3.6e-199 699.9 1469 46.2
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 6.2e-199 699.1 1373 41.4
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.1e-198 698.4 1418 41.5
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 4.9e-196 689.5 1448 41.9
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 6.4e-196 689.1 1426 44.5
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 5.4e-195 686.0 1424 42.6
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 2.7e-194 683.7 1416 41.0
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 1.0e-193 681.8 1447 43.2
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 8.1e-191 672.2 1494 39.8
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 2.0e-189 667.5 1506 40.8
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 3.7e-188 663.3 1450 41.9
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 3.2e-187 660.2 1363 40.2
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 7.1e-187 659.1 1403 43.7
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 7.3e-184 649.0 712 58.0
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 1.4e-182 644.8 1392 40.9
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 1.4e-182 644.8 1402 41.2
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 2.6e-181 640.6 1451 41.1
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 6.4e-180 636.0 1324 40.4
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 6.4e-180 636.0 1441 42.6
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 6.0e-178 629.4 1458 38.8
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 2.3e-177 627.5 1409 42.3
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 7.3e-176 622.5 1443 41.5
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.8e-175 620.5 1445 40.3
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.3e-172 611.7 1409 42.2
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 1.7e-172 611.3 1651 37.6
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 3.8e-172 610.1 1206 41.4
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 7.9e-170 602.4 1287 38.9
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 3.0e-169 600.5 1529 40.3
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 3.3e-168 597.0 1462 40.3
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 2.6e-165 587.4 1407 41.0
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 5.8e-165 586.3 1447 37.0
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 3.1e-158 563.9 1519 36.8
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.5e-157 561.6 1391 37.5
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 4.2e-155 553.5 1200 39.4
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 9.3e-155 552.4 1356 42.8
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 9.6e-152 542.3 1342 39.3
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.2e-146 525.4 1371 34.7
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 1.6e-143 515.0 1170 46.9
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 9.4e-131 472.6 936 40.0
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 4.7e-130 470.3 1465 36.2
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 8.2e-127 459.5 590 55.3
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 4.1e-126 457.2 1428 35.9
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.9e-123 448.4 1254 34.1
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 1.3e-119 435.6 1403 37.8
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 8.2e-119 433.0 1203 38.6
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 2.5e-115 421.4 1156 32.4
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 5.4e-110 403.7 1262 33.2
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 2.1e-106 391.7 752 43.9
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 4.5e-101 374.0 684 45.6
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 1.1e-91 342.8 686 44.6
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 1.7e-87 328.9 1276 37.6
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 7.0e-86 323.6 445 45.8
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 8.9e-65 253.4 1069 27.8
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 4.2e-62 244.6 838 27.8
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 2.1e-58 232.3 1296 26.6
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 6.4e-55 220.7 1154 27.6
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 9.3e-54 216.9 1070 27.7
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 9.6e-51 206.8 344 55.2
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 7.6e-48 197.2 277 40.4
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 5.3e-41 174.5 765 31.4
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 2.8e-34 152.1 267 40.8
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 6.3e-34 151.0 373 46.4
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 2.2e-31 142.5 363 36.1
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 1.3e-28 133.3 74 83.8
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 5.1e-28 131.3 92 66.3
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 8.7e-28 130.6 173 45.1
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 2.4e-25 122.5 242 40.1
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 1.2e-24 120.2 117 56.4
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 3.4e-24 118.6 178 48.3
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 2.5e-22 112.5 91 68.1
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 4.6e-21 108.2 146 52.1
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.3e-19 102.1 281 54.4
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 1.3e-18 100.1 61 77.0
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 1.3e-15 90.1 309 25.6
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.3e-15 90.1 108 46.3
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 8.5e-15 87.4 88 50.0
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 2.1e-13 82.8 71 54.9
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 4.7e-13 81.6 98 46.9
A02p33240 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-12 80.1 169 46.2
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 4.8e-10 71.6 60 55.0
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 1.4e-09 70.1 328 26.2
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 1.8e-09 69.7 115 43.5
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 1.6e-08 66.6 57 50.9
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.5e-08 65.1 129 41.9
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 5.9e-08 64.7 50 60.0
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 3.8e-07 62.0 87 41.4
BcaB07g33689 Brassica carinata HOM05D004594 ORTHO05D021612 6.5e-07 61.2 63 60.3
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 9.4e-06 57.4 192 33.9


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