Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21348 Brassica carinata HOM05D005670 ORTHO05D031838 2.4e-47 191.8 95 100.0
C09p32920 Brassica napus HOM05D005670 ORTHO05D031838 1.8e-42 175.6 101 90.1
BolC9t56127H Brassica oleracea HOM05D005670 ORTHO05D031838 1.1e-41 172.9 91 95.6
BcaC04g21352 Brassica carinata HOM05D005670 ORTHO05D007612 9.8e-17 90.1 66 74.2
C09p32840 Brassica napus HOM05D005670 ORTHO05D007612 9.8e-17 90.1 66 74.2
BcaB01g01850 Brassica carinata HOM05D005670 ORTHO05D007612 1.3e-16 89.7 66 72.7
BolC9t56124H Brassica oleracea HOM05D005670 ORTHO05D007612 1.3e-16 89.7 66 72.7
A09p25930 Brassica napus HOM05D005670 ORTHO05D007612 1.7e-16 89.4 50 90.0
BraA09t38162Z Brassica rapa HOM05D005670 ORTHO05D007612 1.7e-16 89.4 50 90.0
CARHR252570 Cardamine hirsuta HOM05D005670 ORTHO05D007612 2.4e-15 85.5 50 86.0
Thhalv10028578m.g Eutrema salsugineum HOM05D005670 ORTHO05D007612 2.4e-15 85.5 50 86.0
Nitab4.5_0002158g0080 Nicotiana tabacum HOM05D005670 ORTHO05D007612 2.4e-15 85.5 84 56.0
THA.LOC104806286 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 3.1e-15 85.1 50 86.0
Ciclev10014972m.g Citrus clementina HOM05D005670 ORTHO05D007612 4.1e-15 84.7 50 84.0
THA.LOC104812854 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 4.1e-15 84.7 50 84.0
Carub.0006s3289 Capsella rubella HOM05D005670 ORTHO05D007612 5.4e-15 84.3 50 84.0
Sp6g04000 Schrenkiella parvula HOM05D005670 ORTHO05D007612 5.4e-15 84.3 50 86.0
AL6G48490 Arabidopsis lyrata HOM05D005670 ORTHO05D007612 7.0e-15 84.0 50 84.0
AT4G04955 Arabidopsis thaliana HOM05D005670 ORTHO05D007612 7.0e-15 84.0 50 84.0
Aa31LG9G9510 Aethionema arabicum HOM05D005670 ORTHO05D007612 9.1e-15 83.6 50 84.0
Aqoxy1G02519 Aquilegia oxysepala HOM05D005670 ORTHO05D007612 1.2e-14 83.2 50 84.0
Cpa.g.sc27.55 Carica papaya HOM05D005670 ORTHO05D007612 1.6e-14 82.8 56 78.6
MD05G1314100 Malus domestica HOM05D005670 ORTHO05D007612 1.6e-14 82.8 50 82.0
Solyc02g078400.3 Solanum lycopersicum HOM05D005670 ORTHO05D007612 2.0e-14 82.4 50 82.0
Sopen02g023260 Solanum pennellii HOM05D005670 ORTHO05D007612 2.0e-14 82.4 50 82.0
PGSC0003DMG400022386 Solanum tuberosum HOM05D005670 ORTHO05D007612 2.0e-14 82.4 50 82.0
SGA_v2.0_scaffold22G09723 Striga asiatica HOM05D005670 ORTHO05D007612 2.0e-14 82.4 50 82.0
AUR62014803 Chenopodium quinoa HOM05D005670 ORTHO05D007612 2.7e-14 82.0 50 82.0
Migut.M01152 Erythranthe guttata HOM05D005670 ORTHO05D007612 2.7e-14 82.0 51 82.4
HanXRQChr04g0124101 Helianthus annuus HOM05D005670 ORTHO05D007612 2.7e-14 82.0 50 82.0
Sc05g0007760 Simmondsia chinensis HOM05D005670 ORTHO05D007612 2.7e-14 82.0 50 80.0
Ah.09g237260 Amaranthus hybridus HOM05D005670 ORTHO05D007612 3.5e-14 81.6 50 80.0
AUR62016994 Chenopodium quinoa HOM05D005670 ORTHO05D007612 3.5e-14 81.6 50 80.0
QL05p039856 Quercus lobata HOM05D005670 ORTHO05D007612 3.5e-14 81.6 72 63.9
Thecc.06G189700 Theobroma cacao HOM05D005670 ORTHO05D007612 3.5e-14 81.6 50 84.0
CAN.G1164.15 Capsicum annuum HOM05D005670 ORTHO05D007612 4.5e-14 81.3 50 80.0
Prupe.4G045000 Prunus persica HOM05D005670 ORTHO05D007612 4.5e-14 81.3 50 80.0
Eucgr.E03319 Eucalyptus grandis HOM05D005670 ORTHO05D007612 5.9e-14 80.9 50 80.0
MBI18_g16998_MAGBIO Magnolia biondii HOM05D005670 ORTHO05D007612 5.9e-14 80.9 50 80.0
MD00G1095000 Malus domestica HOM05D005670 ORTHO05D007612 5.9e-14 80.9 50 80.0
Sabra04G0025900 Salix brachista HOM05D005670 ORTHO05D007612 5.9e-14 80.9 50 82.0
DCAR_004080 Daucus carota HOM05D005670 ORTHO05D007612 7.7e-14 80.5 50 82.0
FvH4_3g09410 Fragaria vesca HOM05D005670 ORTHO05D007612 7.7e-14 80.5 57 77.2
FAN11G1478 Fragaria x ananassa HOM05D005670 ORTHO05D007612 7.7e-14 80.5 57 77.2
FAN16G2869 Fragaria x ananassa HOM05D005670 ORTHO05D007612 7.7e-14 80.5 57 77.2
FAN21G0121 Fragaria x ananassa HOM05D005670 ORTHO05D007612 7.7e-14 80.5 57 77.2
Gohir.A10G024800 Gossypium hirsutum HOM05D005670 ORTHO05D007612 7.7e-14 80.5 50 82.0
Gohir.D10G025500 Gossypium hirsutum HOM05D005670 ORTHO05D007612 7.7e-14 80.5 50 82.0
Gorai.011G026800 Gossypium raimondii HOM05D005670 ORTHO05D007612 7.7e-14 80.5 50 82.0
Lsat_1_v5_gn_7_18941 Lactuca sativa HOM05D005670 ORTHO05D007612 7.7e-14 80.5 50 82.0
RcHm_v2.0_Chr5g0008181 Rosa chinensis HOM05D005670 ORTHO05D007612 7.7e-14 80.5 57 77.2
Haze_06486 Corylus avellana HOM05D005670 ORTHO05D007612 1.0e-13 80.1 50 80.0
ECA236G2993 Erigeron canadensis HOM05D005670 ORTHO05D007612 1.0e-13 80.1 50 82.0
Peaxi162Scf00947g00005 Petunia axillaris HOM05D005670 ORTHO05D007612 1.0e-13 80.1 50 78.0
Nitab4.5_0005954g0030 Nicotiana tabacum HOM05D005670 ORTHO05D007612 1.3e-13 79.7 50 80.0
Hund23715 Selenicereus undatus HOM05D005670 ORTHO05D007612 1.7e-13 79.3 50 80.0
Zm00001eb433900 Zea mays HOM05D005670 ORTHO05D007612 1.7e-13 79.3 58 70.7
Dinv07547 Davidia involucrata HOM05D005670 ORTHO05D007612 2.3e-13 79.0 50 80.0
PSO675G5775 Papaver somniferum HOM05D005670 ORTHO05D007612 2.3e-13 79.0 50 78.0
TWI38G1891 Tripterygium wilfordii HOM05D005670 ORTHO05D007612 2.3e-13 79.0 50 80.0
unitig_22.g6763 Utricularia gibba HOM05D005670 ORTHO05D007612 2.3e-13 79.0 50 80.0
MSTRG.7329 Avicennia marina HOM05D005670 ORTHO05D007612 2.9e-13 78.6 51 78.4
Os04g0680400 Oryza sativa ssp. japonica HOM05D005670 ORTHO05D007612 2.9e-13 78.6 58 69.0
PGR042G2793 Punica granatum HOM05D005670 ORTHO05D007612 2.9e-13 78.6 50 78.0
ClCG03G005950 Citrullus lanatus HOM05D005670 ORTHO05D007612 5.0e-13 77.8 50 76.0
Cc02_g13200 Coffea canephora HOM05D005670 ORTHO05D007612 5.0e-13 77.8 50 80.0
Haze_05742 Corylus avellana HOM05D005670 ORTHO05D007612 5.0e-13 77.8 50 78.0
MELO3C002593.2 Cucumis melo HOM05D005670 ORTHO05D007612 5.0e-13 77.8 50 76.0
CsaV3_1G012190 Cucumis sativus L. HOM05D005670 ORTHO05D007612 5.0e-13 77.8 50 76.0
CiPaw.09G058400 Carya illinoinensis HOM05D005670 ORTHO05D007612 6.5e-13 77.4 56 69.6
Lj1A1206G64 Lonicera japonica HOM05D005670 ORTHO05D007612 6.5e-13 77.4 50 78.0
Nn1g06587 Nelumbo nucifera HOM05D005670 ORTHO05D007612 6.5e-13 77.4 50 78.0
TAR626G1957 Trochodendron aralioides HOM05D005670 ORTHO05D007612 6.5e-13 77.4 50 78.0
Sed0013715 Sechium edule HOM05D005670 ORTHO05D007612 8.6e-13 77.0 50 74.0
TPR.G36745 Trifolium pratense HOM05D005670 ORTHO05D007612 8.6e-13 77.0 78 52.6
Atru.chr10.1904 Acer truncatum HOM05D005670 ORTHO05D007612 1.1e-12 76.6 50 78.0
Manes.16G026300 Manihot esculenta HOM05D005670 ORTHO05D007612 1.1e-12 76.6 50 78.0
CSS0005949 Camellia sinensis var. sinensis HOM05D005670 ORTHO05D007612 1.5e-12 76.3 50 74.0
CANSAT35G0124 Cannabis sativa HOM05D005670 ORTHO05D007612 1.5e-12 76.3 50 74.0
Potri.004G041800 Populus trichocarpa HOM05D005670 ORTHO05D007612 1.5e-12 76.3 50 76.0
vmacro15902 Vaccinium macrocarpon HOM05D005670 ORTHO05D007612 1.5e-12 76.3 57 71.9
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 3.2e-12 75.1 50 74.0
Rhsim06G0021500 Rhododendron simsii HOM05D005670 ORTHO05D007612 3.2e-12 75.1 56 64.3
Sed0017986 Sechium edule HOM05D005670 ORTHO05D007612 3.2e-12 75.1 50 74.0
Phvul.006G186800 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 5.5e-12 74.3 50 70.0
Rhsim02G0128200 Rhododendron simsii HOM05D005670 ORTHO05D007612 5.5e-12 74.3 50 72.0
HPP92_014737 Vanilla planifolia HOM05D005670 ORTHO05D007612 5.5e-12 74.3 55 70.9
Lj6g0007385 Lotus japonicus HOM05D005670 ORTHO05D007612 1.2e-11 73.2 78 51.3
arahy.Tifrunner.gnm1.ann1.06VRVW Arachis hypogaea HOM05D005670 ORTHO05D007612 2.1e-11 72.4 78 50.0
arahy.Tifrunner.gnm1.ann1.RER6EK Arachis hypogaea HOM05D005670 ORTHO05D007612 2.1e-11 72.4 78 50.0
Ca_00305_v3 Cicer arietinum L. HOM05D005670 ORTHO05D007612 2.1e-11 72.4 78 50.0
Psat1g206560 Pisum sativum HOM05D005670 ORTHO05D007612 2.1e-11 72.4 50 66.0
CDE09G0528 Ceratophyllum demersum HOM05D005670 ORTHO05D007612 2.8e-11 72.0 50 68.0
Phvul.006G186700 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 2.8e-11 72.0 78 50.0
VMungo0540G1414 Vigna mungo HOM05D005670 ORTHO05D007612 2.8e-11 72.0 50 66.0
ATR0680G385 Amborella trichopoda HOM05D005670 ORTHO05D007612 3.6e-11 71.6 50 70.0
Glyma.13G240500 Glycine max HOM05D005670 ORTHO05D007612 4.7e-11 71.2 50 66.0
Rhsim04G0080800 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.7e-11 71.2 50 68.0
Glyma.15G072900 Glycine max HOM05D005670 ORTHO05D007612 6.1e-11 70.9 78 50.0
VMungo0540G1652 Vigna mungo HOM05D005670 ORTHO05D007612 6.1e-11 70.9 50 66.0
FvH4_5g20981 Fragaria vesca HOM05D005670 ORTHO05D007612 8.0e-11 70.5 60 70.0
Glyma.15G073000 Glycine max HOM05D005670 ORTHO05D007612 8.0e-11 70.5 50 64.0
Lalb_Chr15g0089871 Lupinus albus HOM05D005670 ORTHO05D007612 1.0e-10 70.1 50 64.0
EL10Ac8g20366 Beta vulgaris HOM05D005670 ORTHO05D007612 1.4e-10 69.7 47 74.5
Medtr2g013060 Medicago truncatula HOM05D005670 ORTHO05D007612 1.4e-10 69.7 50 62.0
Glyma.13G240600 Glycine max HOM05D005670 ORTHO05D007612 4.0e-10 68.2 78 48.7
Mapoly0068s0105 Marchantia polymorpha HOM05D005670 ORTHO05D007612 4.0e-10 68.2 50 64.0
Mapoly0156s0028 Marchantia polymorpha HOM05D005670 ORTHO05D007612 4.0e-10 68.2 50 64.0
AagrBONN_evm.TU.Sc2ySwM_344.2129 Anthoceros agrestis HOM05D005670 ORTHO05D007612 5.2e-10 67.8 50 66.0
SMO145G0108 Selaginella moellendorffii HOM05D005670 ORTHO05D007612 6.8e-10 67.4 58 58.6
BcaB01g01849 Brassica carinata HOM05D001170 ORTHO05D006602 1.3e-08 63.2 39 82.1
PRCOL_00001419 Prasinoderma coloniale HOM05D005670 ORTHO05D007612 6.3e-08 60.8 50 58.0
CBR_g34175 Chara braunii HOM05D005670 ORTHO05D007612 2.4e-07 58.9 50 56.0
Sp6g04010 Schrenkiella parvula HOM05D001170 ORTHO05D006602 4.1e-07 58.2 39 76.9
AL6G48460 Arabidopsis lyrata HOM05D001170 ORTHO05D006602 9.2e-07 57.0 39 74.4
Pp3c2_7120 Physcomitrium patens HOM05D005670 ORTHO05D007612 9.2e-07 57.0 50 56.0
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 9.2e-07 57.0 50 56.0
Thhalv10028614m.g Eutrema salsugineum HOM05D001170 ORTHO05D006602 1.2e-06 56.6 39 74.4
MCO09G610 Micromonas commoda HOM05D005670 ORTHO05D007612 1.2e-06 56.6 46 56.5
Aa31LG9G9540 Aethionema arabicum HOM05D001170 ORTHO05D006602 1.6e-06 56.2 39 74.4
Cre13.g592050 Chlamydomonas reinhardtii HOM05D005670 ORTHO05D007612 1.6e-06 56.2 50 54.0
Pp3c14_11050 Physcomitrium patens HOM05D005670 ORTHO05D007612 1.6e-06 56.2 50 50.0
AT4G04950 Arabidopsis thaliana HOM05D001170 ORTHO05D006602 2.0e-06 55.8 39 71.8
Cfa026875 Carpinus fangiana HOM05D005670 ORTHO05D007612 2.0e-06 55.8 43 58.1
Carub.0006s3288 Capsella rubella HOM05D001170 ORTHO05D006602 3.5e-06 55.1 39 71.8
CARHR252590 Cardamine hirsuta HOM05D001170 ORTHO05D006602 5.9e-06 54.3 39 71.8
FAN18G0055 Fragaria x ananassa HOM05D005670 ORTHO05D007612 5.9e-06 54.3 55 60.0


User provided reference genes

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