Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 8.5e-48 193.4 99 100.0
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 8.5e-48 193.4 99 100.0
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 8.5e-48 193.4 99 100.0
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 3.4e-44 181.4 99 96.0
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 3.4e-44 181.4 99 96.0
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.0e-40 169.9 91 93.4
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.9e-39 165.6 99 87.9
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 4.7e-38 161.0 99 84.8
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 6.1e-38 160.6 99 85.9
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 1.4e-37 159.5 99 84.8
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.8e-37 159.1 99 83.8
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 5.2e-37 157.5 99 83.8
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 4.4e-36 154.5 99 81.8
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-35 152.9 97 80.4
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 4.9e-35 151.0 95 84.2
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.1e-34 149.8 97 79.4
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.1e-34 149.8 97 79.4
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.4e-34 148.7 89 82.0
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.4e-34 148.7 89 82.0
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.4e-34 148.7 89 82.0
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.4e-34 148.7 89 82.0
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 4.5e-33 144.4 89 80.9
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 7.3e-31 137.1 92 73.9
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.0e-29 133.3 80 81.2
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 1.8e-29 132.5 79 82.3
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 1.8e-29 132.5 79 82.3
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 1.8e-29 132.5 79 82.3
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 8.9e-29 130.2 81 77.8
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 8.9e-29 130.2 98 69.4
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.2e-28 129.8 91 70.3
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.2e-28 129.8 99 69.7
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 1.5e-28 129.4 92 66.3
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.0e-28 129.0 87 75.9
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.6e-28 128.6 89 70.8
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 3.4e-28 128.3 80 78.8
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 4.4e-28 127.9 91 71.4
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 5.7e-28 127.5 80 77.5
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 7.5e-28 127.1 97 70.1
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 7.5e-28 127.1 87 71.3
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.5e-28 127.1 91 70.3
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 9.8e-28 126.7 90 67.8
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 9.8e-28 126.7 75 86.7
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.3e-27 126.3 94 68.1
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.3e-27 126.3 84 72.6
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.7e-27 125.9 92 68.5
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.7e-27 125.9 88 72.7
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.7e-27 125.9 81 76.5
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.7e-27 125.9 89 71.9
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.7e-27 125.9 91 69.2
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 2.2e-27 125.6 81 75.3
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 2.2e-27 125.6 81 75.3
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 2.2e-27 125.6 87 71.3
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 2.9e-27 125.2 80 75.0
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 2.9e-27 125.2 97 66.0
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 3.7e-27 124.8 98 69.4
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 4.9e-27 124.4 95 64.2
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 4.9e-27 124.4 96 66.7
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 6.4e-27 124.0 91 69.2
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 6.4e-27 124.0 97 68.0
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 6.4e-27 124.0 89 71.9
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 6.4e-27 124.0 97 66.0
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 6.4e-27 124.0 81 74.1
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 8.3e-27 123.6 81 72.8
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 8.3e-27 123.6 82 75.6
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 8.3e-27 123.6 81 74.1
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 8.3e-27 123.6 80 72.5
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 8.3e-27 123.6 92 66.3
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.1e-26 123.2 97 63.9
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.1e-26 123.2 90 71.1
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 1.1e-26 123.2 80 75.0
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 74.1
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.4e-26 122.9 81 72.8
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.4e-26 122.9 91 69.2
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 1.4e-26 122.9 82 70.7
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 1.4e-26 122.9 82 74.4
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 1.4e-26 122.9 82 74.4
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.4e-26 122.9 94 68.1
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 1.8e-26 122.5 89 66.3
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 1.8e-26 122.5 80 75.0
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.8e-26 122.5 96 67.7
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 1.8e-26 122.5 82 74.4
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 2.4e-26 122.1 91 63.7
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 2.4e-26 122.1 91 65.9
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 3.2e-26 121.7 91 67.0
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 3.2e-26 121.7 93 62.4
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 3.2e-26 121.7 80 76.2
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 5.4e-26 120.9 102 64.7
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 7.0e-26 120.6 96 62.5
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 7.0e-26 120.6 81 72.8
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 7.0e-26 120.6 81 71.6
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 9.2e-26 120.2 81 74.1
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 9.2e-26 120.2 80 70.0
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.0e-25 119.0 100 61.0
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 3.5e-25 118.2 80 71.2
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 4.6e-25 117.9 89 61.8
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 4.6e-25 117.9 98 63.3
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 7.8e-25 117.1 73 80.8
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.0e-24 116.7 80 75.0
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 1.0e-24 116.7 91 67.0
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 2.3e-24 115.5 93 65.6
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 3.9e-24 114.8 98 61.2
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.0e-24 114.4 75 77.3
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 8.6e-24 113.6 90 63.3
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 8.6e-24 113.6 90 62.2
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.1e-23 113.2 75 74.7
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.1e-23 113.2 73 78.1
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.1e-23 113.2 83 68.7
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 1.5e-23 112.8 75 73.3
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.5e-23 112.1 82 65.9
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.5e-23 112.1 74 75.7
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.5e-23 112.1 74 75.7
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.5e-23 112.1 74 75.7
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.3e-23 111.7 92 60.9
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 9.5e-23 110.2 99 66.7
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 9.5e-23 110.2 76 75.0
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.2e-22 109.8 82 64.6
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.2e-22 109.8 82 64.6
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.2e-22 109.8 75 70.7
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.6e-22 109.4 75 70.7
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.1e-22 109.0 71 77.5
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 2.8e-22 108.6 81 69.1
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 2.8e-22 108.6 97 51.5
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 3.6e-22 108.2 80 71.2
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 4.7e-22 107.8 75 69.3
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 4.0e-21 104.8 92 64.1
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 8.9e-21 103.6 74 70.3
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.2e-20 103.2 75 70.7
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.5e-20 102.8 82 63.4
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.4e-20 101.7 81 64.2
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 2.4e-18 95.5 75 66.7
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 9.2e-18 93.6 107 50.5
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 2.7e-17 92.0 78 59.0
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 3.5e-17 91.7 78 62.8
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.6e-17 91.3 74 63.5
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 6.0e-17 90.9 72 65.3
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 7.3e-15 84.0 90 53.3
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 7.3e-15 84.0 90 53.3
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.8e-13 79.3 54 68.5
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 4.4e-12 74.7 78 51.3
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.4e-12 74.7 52 69.2
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.4e-12 74.7 52 69.2
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 2.9e-11 72.0 51 62.7
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 6.4e-11 70.9 72 51.4
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.4e-10 69.7 64 54.7
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 3.6e-06 55.1 40 65.0


User provided reference genes

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