Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20281 Brassica carinata HOM05D003159 ORTHO05D003780 1.9e-34 148.7 79 100.0
BolC9t57426H Brassica oleracea HOM05D003159 ORTHO05D003780 1.5e-31 139.0 79 97.5
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 4.1e-29 131.0 76 89.5
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 4.1e-29 131.0 76 89.5
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 4.1e-29 131.0 76 89.5
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 9.2e-29 129.8 76 88.2
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 9.2e-29 129.8 76 88.2
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 1.6e-28 129.0 76 88.2
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 1.6e-28 129.0 76 88.2
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 1.6e-28 129.0 76 88.2
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 1.6e-28 129.0 76 88.2
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 1.6e-28 129.0 76 88.2
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 1.6e-28 129.0 76 88.2
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 2.1e-28 128.6 76 85.5
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 4.6e-28 127.5 76 86.8
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 1.3e-27 125.9 76 84.2
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 6.6e-27 123.6 76 81.6
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 8.7e-27 123.2 76 81.6
C09p45540 Brassica napus HOM05D003159 ORTHO05D003780 1.1e-26 122.9 77 87.0
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 1.9e-26 122.1 76 80.3
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 5.6e-26 120.6 76 80.3
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 9.6e-26 119.8 82 78.0
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 9.6e-26 119.8 76 80.3
BcaB02g09259 Brassica carinata HOM05D003159 ORTHO05D003780 2.8e-25 118.2 73 84.9
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 4.7e-25 117.5 76 78.9
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 1.1e-21 106.3 74 73.0
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 2.4e-21 105.1 74 70.3
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 5.4e-21 104.0 61 90.2
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 5.4e-21 104.0 74 70.3
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 7.1e-21 103.6 74 68.9
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 9.3e-21 103.2 74 68.9
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 1.6e-20 102.4 74 66.2
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 1.6e-20 102.4 74 66.2
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 1.6e-20 102.4 74 67.6
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 2.1e-20 102.1 73 69.9
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 2.1e-20 102.1 74 67.6
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 2.1e-20 102.1 74 67.6
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 2.1e-20 102.1 73 71.2
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 4.6e-20 100.9 74 68.9
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 4.6e-20 100.9 74 66.2
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 6.0e-20 100.5 73 71.2
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 7.8e-20 100.1 74 67.6
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 7.8e-20 100.1 74 63.5
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 7.8e-20 100.1 74 66.2
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 7.8e-20 100.1 74 67.6
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 7.8e-20 100.1 74 67.6
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 7.8e-20 100.1 74 66.2
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 7.8e-20 100.1 74 66.2
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 7.8e-20 100.1 74 66.2
Sabra19G0025900 Salix brachista HOM05D003159 ORTHO05D003780 7.8e-20 100.1 74 66.2
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 7.8e-20 100.1 74 67.6
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 7.8e-20 100.1 74 67.6
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 1.0e-19 99.8 74 63.5
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 1.0e-19 99.8 74 64.9
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 1.0e-19 99.8 73 68.5
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 1.0e-19 99.8 74 66.2
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 1.3e-19 99.4 74 62.2
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 1.3e-19 99.4 75 68.0
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 1.7e-19 99.0 73 69.9
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 2.3e-19 98.6 74 66.2
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 3.0e-19 98.2 73 68.5
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 3.0e-19 98.2 74 64.9
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 3.0e-19 98.2 73 65.8
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 3.0e-19 98.2 73 68.5
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 3.0e-19 98.2 73 68.5
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 3.9e-19 97.8 74 66.2
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 3.9e-19 97.8 74 63.5
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 3.9e-19 97.8 74 64.9
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 5.1e-19 97.4 76 59.2
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 5.1e-19 97.4 74 62.2
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 5.1e-19 97.4 74 62.2
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 5.1e-19 97.4 74 62.2
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 5.1e-19 97.4 74 67.6
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 5.1e-19 97.4 74 64.9
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 5.1e-19 97.4 74 64.9
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 6.6e-19 97.1 74 63.5
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 6.6e-19 97.1 73 64.4
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 6.6e-19 97.1 73 64.4
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 6.6e-19 97.1 73 65.8
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 1.1e-18 96.3 74 63.5
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 1.1e-18 96.3 73 67.1
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 1.5e-18 95.9 73 64.4
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 1.5e-18 95.9 74 62.2
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 1.5e-18 95.9 74 67.6
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.9e-18 95.5 74 62.2
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 1.9e-18 95.5 74 64.9
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 2.5e-18 95.1 73 63.0
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 2.5e-18 95.1 73 67.1
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 4.3e-18 94.4 73 64.4
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 4.3e-18 94.4 73 64.4
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 4.3e-18 94.4 74 63.5
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 4.3e-18 94.4 74 66.2
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 4.3e-18 94.4 74 62.2
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 4.3e-18 94.4 74 64.9
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 5.6e-18 94.0 74 64.9
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 7.3e-18 93.6 73 65.8
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 1.6e-17 92.4 73 64.4
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 2.1e-17 92.0 74 60.8
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 3.6e-17 91.3 74 60.8
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 4.8e-17 90.9 73 63.0
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 4.8e-17 90.9 73 63.0
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 8.1e-17 90.1 69 66.7
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 8.1e-17 90.1 82 58.5
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 8.1e-17 90.1 68 66.2
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 1.1e-16 89.7 74 59.5
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 1.1e-16 89.7 74 59.5
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 1.1e-16 89.7 74 60.8
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.8e-16 89.0 69 65.2
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.4e-16 88.6 74 59.5
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 6.9e-16 87.0 74 58.1
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 1.2e-15 86.3 74 58.1
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.2e-15 86.3 74 58.1
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 3.4e-15 84.7 67 65.7
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 4.5e-15 84.3 73 60.3
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.7e-14 82.4 74 55.4
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 1.7e-14 82.4 72 55.6
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 2.9e-14 81.6 77 50.6
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 3.8e-14 81.3 73 54.8
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 6.4e-14 80.5 72 52.8
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 8.4e-14 80.1 75 56.0
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 8.4e-14 80.1 73 54.8
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 1.9e-13 79.0 75 50.7
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 4.2e-13 77.8 75 50.7
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 5.4e-13 77.4 73 56.2
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 5.4e-13 77.4 77 50.6
Gorai.007G279200 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.6e-12 75.9 65 53.8
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 2.7e-12 75.1 119 40.3
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 3.5e-12 74.7 75 49.3
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 6.0e-12 73.9 75 49.3
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 1.8e-11 72.4 48 72.9
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 2.3e-11 72.0 72 51.4
Cc06_g22420 Coffea canephora HOM05D003159 ORTHO05D003780 2.3e-11 72.0 61 57.4
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 2.3e-11 72.0 76 48.7
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 2.3e-11 72.0 77 45.5
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 3.9e-11 71.2 49 71.4
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 3.9e-11 71.2 50 68.0
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 1.1e-10 69.7 71 54.9
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.9e-10 68.9 48 70.8
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 2.5e-10 68.6 61 59.0
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 4.3e-10 67.8 71 50.7
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 3.7e-09 64.7 73 56.2
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 3.7e-09 64.7 48 66.7
Sed0012102 Sechium edule HOM05D003159 ORTHO05D003780 4.8e-09 64.3 73 52.1
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 6.2e-09 63.9 73 47.9
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 9.0e-08 60.1 71 43.7
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 1.2e-07 59.7 72 43.1
FAN02G2337 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.6e-07 58.5 88 40.9
FAN05G1365 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.9e-06 55.1 94 37.2
FvH4_6g42830 Fragaria vesca HOM05D003159 ORTHO05D003780 3.8e-06 54.7 69 46.4


User provided reference genes

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