Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20258 Brassica carinata HOM05D002755 ORTHO05D002910 2.0e-56 222.2 114 100.0
A01p30470 Brassica napus HOM05D001150 ORTHO05D000998 1.7e-44 182.6 116 83.6
BraA01t03179Z Brassica rapa HOM05D001150 ORTHO05D000998 1.7e-44 182.6 116 83.6
BolC9t57450H Brassica oleracea HOM05D001150 ORTHO05D000998 1.3e-36 156.4 81 100.0
BcaC05g28949 Brassica carinata HOM05D002755 ORTHO05D002910 2.5e-27 125.6 80 88.8
BolC5t33829H Brassica oleracea HOM05D002755 ORTHO05D002910 7.3e-27 124.0 81 88.9
A05p33790 Brassica napus HOM05D002580 ORTHO05D002811 4.7e-26 121.3 81 86.4
C05p50800 Brassica napus HOM05D002580 ORTHO05D002910 6.2e-26 120.9 81 87.7
C06p33630 Brassica napus HOM05D002755 ORTHO05D002910 6.2e-26 120.9 78 84.6
BraA05t22201Z Brassica rapa HOM05D002580 ORTHO05D002910 2.4e-25 119.0 81 85.2
BcaB01g01225 Brassica carinata HOM05D001150 ORTHO05D000998 1.5e-24 116.3 90 68.9
A01p38450 Brassica napus HOM05D002755 ORTHO05D002910 7.6e-24 114.0 82 80.5
BraA01t03895Z Brassica rapa HOM05D002755 ORTHO05D002910 7.6e-24 114.0 82 80.5
C01p48770 Brassica napus HOM05D002755 ORTHO05D002910 1.4e-22 109.8 85 80.0
Thhalv10021630m.g Eutrema salsugineum HOM05D002755 ORTHO05D002910 5.4e-22 107.8 82 79.3
BcaC05g28947 Brassica carinata HOM05D002755 ORTHO05D002910 2.7e-21 105.5 81 76.5
C05p51670 Brassica napus HOM05D001150 ORTHO05D000998 2.7e-21 105.5 70 78.6
BcaC09g48543 Brassica carinata HOM05D002755 ORTHO05D002910 3.5e-21 105.1 78 78.2
A05p33780 Brassica napus HOM05D002755 ORTHO05D002910 1.3e-20 103.2 79 72.2
BolC5t33853H Brassica oleracea HOM05D001150 ORTHO05D000998 1.7e-20 102.8 71 77.5
Thhalv10021634m.g Eutrema salsugineum HOM05D002755 ORTHO05D002910 5.1e-20 101.3 82 75.6
AL3G28290 Arabidopsis lyrata HOM05D002755 ORTHO05D002910 1.1e-19 100.1 84 73.8
Sp3g13940 Schrenkiella parvula HOM05D002755 ORTHO05D002910 1.9e-19 99.4 81 74.1
Carub.0003s1539 Capsella rubella HOM05D002755 ORTHO05D002910 3.3e-19 98.6 82 73.2
AT3G15640 Arabidopsis thaliana HOM05D002755 ORTHO05D002910 4.3e-19 98.2 82 75.6
BcaB04g20912 Brassica carinata HOM05D002755 ORTHO05D002910 7.3e-19 97.4 85 72.9
BcaC01g03865 Brassica carinata HOM05D002755 ORTHO05D002910 4.8e-18 94.7 86 72.1
BcaC05g28948 Brassica carinata HOM05D002755 ORTHO05D002910 1.4e-17 93.2 80 72.5
C05p50790 Brassica napus HOM05D002755 ORTHO05D002910 1.4e-17 93.2 80 72.5
CARHR090730 Cardamine hirsuta HOM05D002755 ORTHO05D002910 2.4e-17 92.4 82 73.2
BcaNung06873 Brassica carinata HOM05D002755 ORTHO05D000998 6.9e-17 90.9 67 74.6
BcaC01g03866 Brassica carinata HOM05D002755 ORTHO05D002910 1.2e-16 90.1 82 67.1
C03p47780 Brassica napus HOM05D002755 ORTHO05D002910 3.4e-16 88.6 83 67.5
BraA03t13090Z Brassica rapa HOM05D002755 ORTHO05D002910 3.4e-16 88.6 92 64.1
BcaC09g48544 Brassica carinata HOM05D002755 ORTHO05D002910 4.9e-15 84.7 85 63.5
BolC3t17055H Brassica oleracea HOM05D002755 ORTHO05D002910 8.4e-15 84.0 83 62.7
THA.LOC104818040 Tarenaya hassleriana HOM05D002755 ORTHO05D002910 1.9e-14 82.8 79 62.0
BraA03t13089Z Brassica rapa HOM05D002755 ORTHO05D002910 4.2e-14 81.6 85 60.0
Carub.0001s4177 Capsella rubella HOM05D002755 ORTHO05D002910 7.1e-14 80.9 83 57.8
C01p48780 Brassica napus HOM05D002755 ORTHO05D002910 9.3e-14 80.5 43 93.0
BolC1t04833H Brassica oleracea HOM05D002755 ORTHO05D002910 9.3e-14 80.5 43 93.0
A03p39400 Brassica napus HOM05D002755 ORTHO05D002910 1.2e-13 80.1 81 60.5
C03p47790 Brassica napus HOM05D002755 ORTHO05D002910 1.2e-13 80.1 82 63.4
Aa31LG10G2330 Aethionema arabicum HOM05D002755 ORTHO05D002910 2.1e-13 79.3 83 63.9
AL1G61020 Arabidopsis lyrata HOM05D002755 ORTHO05D002910 2.1e-13 79.3 84 56.0
CARHR042850 Cardamine hirsuta HOM05D002755 ORTHO05D002910 4.6e-13 78.2 81 59.3
THA.LOC104810502 Tarenaya hassleriana HOM05D002755 ORTHO05D002910 1.3e-12 76.6 81 60.5
Potri.001G173800 Populus trichocarpa HOM05D002755 ORTHO05D002910 3.3e-11 72.0 55 63.6
PGR031G3877 Punica granatum HOM05D002755 ORTHO05D002910 3.3e-11 72.0 81 58.0
Sabra01G0138000 Salix brachista HOM05D002755 ORTHO05D002910 3.3e-11 72.0 67 55.2
CARHR074260 Cardamine hirsuta HOM05D002755 ORTHO05D002910 2.1e-10 69.3 58 60.3
Thhalv10019226m.g Eutrema salsugineum HOM05D002755 ORTHO05D002910 2.8e-10 68.9 58 58.6
Potri.003G060100 Populus trichocarpa HOM05D002755 ORTHO05D002910 3.6e-10 68.6 55 63.6
THA.LOC104813568 Tarenaya hassleriana HOM05D002755 ORTHO05D002910 3.6e-10 68.6 58 60.3
COL.COLO4_12884 Corchorus olitorius HOM05D002755 ORTHO05D002910 8.1e-10 67.4 73 50.7
Dinv38093 Davidia involucrata HOM05D002755 ORTHO05D002910 8.1e-10 67.4 67 59.7
Duzib192G1043 Durio zibethinus HOM05D002755 ORTHO05D002910 8.1e-10 67.4 59 55.9
AL2G41280 Arabidopsis lyrata HOM05D002755 ORTHO05D002910 1.1e-09 67.0 78 52.6
Eucgr.F02551 Eucalyptus grandis HOM05D002755 ORTHO05D002910 1.1e-09 67.0 95 48.4
Sp5g35580 Schrenkiella parvula HOM05D002755 ORTHO05D002910 1.1e-09 67.0 80 50.0
Aa31LG4G520 Aethionema arabicum HOM05D002755 ORTHO05D002910 1.4e-09 66.6 78 52.6
Gohir.D10G074601 Gossypium hirsutum HOM05D002755 ORTHO05D002910 1.8e-09 66.2 73 50.7
Gorai.N017100 Gossypium raimondii HOM05D002755 ORTHO05D002910 1.8e-09 66.2 73 50.7
Thecc.06G074400 Theobroma cacao HOM05D002755 ORTHO05D002910 1.8e-09 66.2 73 52.1
AT1G80230 Arabidopsis thaliana HOM05D002755 ORTHO05D002910 2.4e-09 65.9 78 50.0
CiPaw.01G243700 Carya illinoinensis HOM05D002755 ORTHO05D002910 3.1e-09 65.5 87 52.9
Gohir.A10G076700 Gossypium hirsutum HOM05D002755 ORTHO05D002910 3.1e-09 65.5 73 49.3
CSS0040272 Camellia sinensis var. sinensis HOM05D002755 ORTHO05D002910 4.0e-09 65.1 67 53.7
Eucgr.J03038 Eucalyptus grandis HOM05D002755 ORTHO05D002910 4.0e-09 65.1 56 60.7
Sc12g0008890 Simmondsia chinensis HOM05D002755 ORTHO05D002910 5.3e-09 64.7 76 53.9
Cpa.g.sc10.219 Carica papaya HOM05D002755 ORTHO05D002910 6.9e-09 64.3 85 50.6
QL05p027519 Quercus lobata HOM05D002755 ORTHO05D002910 6.9e-09 64.3 79 45.6
Haze_16506 Corylus avellana HOM05D002755 ORTHO05D002910 9.0e-09 63.9 71 52.1
Lj5A68T63 Lonicera japonica HOM05D002755 ORTHO05D002910 9.0e-09 63.9 90 46.7
Rhsim08G0216800 Rhododendron simsii HOM05D002755 ORTHO05D002910 9.0e-09 63.9 75 50.7
PGR102G1045 Punica granatum HOM05D002755 ORTHO05D002910 1.2e-08 63.5 77 57.1
Sc10g0005590 Simmondsia chinensis HOM05D002755 ORTHO05D002910 1.2e-08 63.5 81 51.9
Sabra03G0034500 Salix brachista HOM05D002755 ORTHO05D002910 1.5e-08 63.2 82 47.6
CSS0010701 Camellia sinensis var. sinensis HOM05D002755 ORTHO05D002910 2.0e-08 62.8 67 52.2
CiPaw.02G154400 Carya illinoinensis HOM05D002755 ORTHO05D002910 2.0e-08 62.8 77 51.9
DCAR_025477 Daucus carota HOM05D002755 ORTHO05D002910 2.0e-08 62.8 78 43.6
Peaxi162Scf00034g00139 Petunia axillaris HOM05D002755 ORTHO05D002910 2.0e-08 62.8 61 55.7
Rhsim12G0193700 Rhododendron simsii HOM05D002755 ORTHO05D002910 2.0e-08 62.8 42 64.3
BolC2t09758H Brassica oleracea HOM05D002755 ORTHO05D002910 2.6e-08 62.4 61 62.3
Hma1.2p1_0515F.1_g170300 Hydrangea macrophylla HOM05D002755 ORTHO05D002910 2.6e-08 62.4 76 53.9
Hund00554 Selenicereus undatus HOM05D002755 ORTHO05D002910 2.6e-08 62.4 53 62.3
TWI12G1122 Tripterygium wilfordii HOM05D002755 ORTHO05D002910 2.6e-08 62.4 53 60.4
CANSAT56G1729 Cannabis sativa HOM05D002755 ORTHO05D002910 3.4e-08 62.0 78 56.4
Ciclev10026654m.g Citrus clementina HOM05D002755 ORTHO05D002910 3.4e-08 62.0 58 56.9
Peaxi162Scf00015g00458 Petunia axillaris HOM05D002755 ORTHO05D002910 3.4e-08 62.0 60 58.3
TAR625G0657 Trochodendron aralioides HOM05D002755 ORTHO05D002910 3.4e-08 62.0 84 47.6
Actinidia15804 Actinidia chinensis HOM05D002755 ORTHO05D002910 4.5e-08 61.6 78 46.2
C02p11020 Brassica napus HOM05D063464 ORTHO05D040112 4.5e-08 61.6 40 77.5
BolC2t07172H Brassica oleracea HOM05D063464 ORTHO05D040112 4.5e-08 61.6 40 77.5
Duzib235G0324 Durio zibethinus HOM05D002755 ORTHO05D002910 4.5e-08 61.6 73 47.9
Gohir.A06G119000 Gossypium hirsutum HOM05D002755 ORTHO05D002910 4.5e-08 61.6 74 48.6
Sed0001442 Sechium edule HOM05D002755 ORTHO05D002910 5.8e-08 61.2 79 44.3
Cc04_g03950 Coffea canephora HOM05D002755 ORTHO05D002910 7.6e-08 60.8 80 47.5
Atru.chr1.3142 Acer truncatum HOM05D002755 ORTHO05D002910 9.9e-08 60.5 77 53.2
Gorai.010G143500 Gossypium raimondii HOM05D002755 ORTHO05D002910 9.9e-08 60.5 74 48.6
Oeu052292.1 Olea europaea HOM05D002755 ORTHO05D002910 9.9e-08 60.5 76 48.7
Oeu063819.1 Olea europaea HOM05D002755 ORTHO05D002910 9.9e-08 60.5 77 46.8
Psat7g254960 Pisum sativum HOM05D002755 ORTHO05D002910 9.9e-08 60.5 58 53.4
Sopen06g025220 Solanum pennellii HOM05D002755 ORTHO05D002910 9.9e-08 60.5 85 47.1
vmacro16922 Vaccinium macrocarpon HOM05D002755 ORTHO05D002910 9.9e-08 60.5 36 75.0
VMungo0331G1180 Vigna mungo HOM05D002755 ORTHO05D002910 9.9e-08 60.5 43 74.4
Glyma.08G209700 Glycine max HOM05D002755 ORTHO05D002910 1.3e-07 60.1 43 72.1
Phvul.010G153300 Phaseolus vulgaris HOM05D002755 ORTHO05D002910 1.3e-07 60.1 43 72.1
Actinidia16000 Actinidia chinensis HOM05D001262 ORTHO05D009001 1.7e-07 59.7 99 41.4
CsaV3_4G001330 Cucumis sativus L. HOM05D002755 ORTHO05D002910 1.7e-07 59.7 89 43.8
Gohir.A06G187200 Gossypium hirsutum HOM05D002755 ORTHO05D002910 1.7e-07 59.7 73 45.2
TWI18G0449 Tripterygium wilfordii HOM05D002755 ORTHO05D002910 1.7e-07 59.7 45 64.4
BcaC03g15990 Brassica carinata HOM05D002755 ORTHO05D002910 2.2e-07 59.3 61 59.0
Glyma.07G032800 Glycine max HOM05D002755 ORTHO05D002910 2.2e-07 59.3 59 57.6
Gohir.D06G123400 Gossypium hirsutum HOM05D002755 ORTHO05D002910 2.9e-07 58.9 74 47.3
Manes.04G117400 Manihot esculenta HOM05D002755 ORTHO05D002910 2.9e-07 58.9 57 52.6
TAR636G3224 Trochodendron aralioides HOM05D002755 ORTHO05D002910 2.9e-07 58.9 86 45.3
Gohir.D06G193400 Gossypium hirsutum HOM05D002755 ORTHO05D002910 4.9e-07 58.2 73 45.2
HanXRQChr10g0304491 Helianthus annuus HOM05D002755 ORTHO05D002910 4.9e-07 58.2 67 52.2
Lj7A718T63 Lonicera japonica HOM05D002755 ORTHO05D002910 4.9e-07 58.2 38 71.1
Nitab4.5_0000620g0130 Nicotiana tabacum HOM05D002755 ORTHO05D002910 4.9e-07 58.2 78 52.6
Nitab4.5_0001959g0060 Nicotiana tabacum HOM05D002755 ORTHO05D002910 4.9e-07 58.2 37 70.3
Actinidia08814 Actinidia chinensis HOM05D002755 ORTHO05D002910 6.4e-07 57.8 80 46.2
DCAR_025479 Daucus carota HOM05D002755 ORTHO05D002910 6.4e-07 57.8 78 43.6
DCAR_025480 Daucus carota HOM05D002755 ORTHO05D002910 6.4e-07 57.8 78 43.6
Lalb_Chr14g0373651 Lupinus albus HOM05D002755 ORTHO05D002910 6.4e-07 57.8 59 54.2
MELO3C012937.2 Cucumis melo HOM05D002755 ORTHO05D002910 8.4e-07 57.4 53 56.6
Nn8g39371 Nelumbo nucifera HOM05D002755 ORTHO05D002910 8.4e-07 57.4 73 52.1
Peaxi162Scf00207g00738 Petunia axillaris HOM05D002755 ORTHO05D002910 8.4e-07 57.4 78 51.3
Ca_20420_v3 Cicer arietinum L. HOM05D002755 ORTHO05D002910 1.1e-06 57.0 58 55.2
MELO3C017907.2 Cucumis melo HOM05D000032 ORTHO05D006970 1.1e-06 57.0 89 41.6
CsaV3_3G026640 Cucumis sativus L. HOM05D002755 ORTHO05D002910 1.1e-06 57.0 54 53.7
Migut.I00805 Erythranthe guttata HOM05D002755 ORTHO05D002910 1.1e-06 57.0 75 48.0
Nitab4.5_0006854g0040 Nicotiana tabacum HOM05D002755 ORTHO05D002910 1.1e-06 57.0 86 44.2
Nitab4.5_0012475g0010 Nicotiana tabacum HOM05D002755 ORTHO05D002910 1.1e-06 57.0 78 51.3
Gohir.A05G124601 Gossypium hirsutum HOM05D002755 ORTHO05D002910 1.4e-06 56.6 47 61.7
Gorai.010G227300 Gossypium raimondii HOM05D002755 ORTHO05D002910 1.4e-06 56.6 73 45.2
Lsat_1_v5_gn_5_132601 Lactuca sativa HOM05D002755 ORTHO05D002910 1.4e-06 56.6 82 46.3
Lalb_Chr04g0262521 Lupinus albus HOM05D002755 ORTHO05D002910 1.4e-06 56.6 78 47.4
Solyc06g067940.4 Solanum lycopersicum HOM05D002755 ORTHO05D002910 1.4e-06 56.6 85 45.9
TAR626G1354 Trochodendron aralioides HOM05D002755 ORTHO05D002910 1.4e-06 56.6 33 72.7
arahy.Tifrunner.gnm1.ann1.0G8GJQ Arachis hypogaea HOM05D002755 ORTHO05D002910 1.9e-06 56.2 80 45.0
arahy.Tifrunner.gnm1.ann1.EDW5DG Arachis hypogaea HOM05D002755 ORTHO05D002910 1.9e-06 56.2 80 45.0
BcaB01g00405 Brassica carinata HOM05D001150 ORTHO05D000998 1.9e-06 56.2 36 80.6
ClCG07G012880 Citrullus lanatus HOM05D002755 ORTHO05D002910 1.9e-06 56.2 79 44.3
Hund06585 Selenicereus undatus HOM05D002755 ORTHO05D002910 1.9e-06 56.2 55 58.2
Solyc12g042900.2 Solanum lycopersicum HOM05D002755 ORTHO05D002910 1.9e-06 56.2 43 67.4
TPR.G38677 Trifolium pratense HOM05D001432 ORTHO05D009001 1.9e-06 56.2 32 78.1
Nn2g11938 Nelumbo nucifera HOM05D002755 ORTHO05D002910 2.4e-06 55.8 80 46.2
C02p37460 Brassica napus HOM05D002755 ORTHO05D002910 3.2e-06 55.5 61 55.7
MD17G1203700 Malus domestica HOM05D002755 ORTHO05D002910 3.2e-06 55.5 87 47.1
Nitab4.5_0003011g0020 Nicotiana tabacum HOM05D002755 ORTHO05D002910 3.2e-06 55.5 76 51.3
Cfa013177 Carpinus fangiana HOM05D002755 ORTHO05D002910 4.2e-06 55.1 32 81.2
ClCG10G010110 Citrullus lanatus HOM05D001170 ORTHO05D002759 5.5e-06 54.7 94 39.4
FvH4_2g29600 Fragaria vesca HOM05D002755 ORTHO05D002910 5.5e-06 54.7 87 46.0
FAN24G2439 Fragaria x ananassa HOM05D002755 ORTHO05D002910 5.5e-06 54.7 87 46.0
Manes.11G052200 Manihot esculenta HOM05D002755 ORTHO05D002910 5.5e-06 54.7 57 50.9
Psat5g300560 Pisum sativum HOM05D002755 ORTHO05D002910 5.5e-06 54.7 32 75.0
Aqoxy7G03754 Aquilegia oxysepala HOM05D002755 ORTHO05D002910 7.1e-06 54.3 61 57.4
Dinv30174 Davidia involucrata HOM05D002755 ORTHO05D002910 7.1e-06 54.3 73 42.5
FvH4_6g30460 Fragaria vesca HOM05D002755 ORTHO05D002910 7.1e-06 54.3 70 45.7
FAN09G1580 Fragaria x ananassa HOM05D002755 ORTHO05D002910 7.1e-06 54.3 70 47.1
FAN14G1582 Fragaria x ananassa HOM05D002755 ORTHO05D002910 7.1e-06 54.3 70 45.7
HanXRQChr16g0504221 Helianthus annuus HOM05D002755 ORTHO05D002910 7.1e-06 54.3 78 46.2
Lj3g0002253 Lotus japonicus HOM05D002755 ORTHO05D002910 7.1e-06 54.3 59 55.9
Prupe.3G078600 Prunus persica HOM05D002755 ORTHO05D002910 7.1e-06 54.3 49 59.2
RcHm_v2.0_Chr2g0136811 Rosa chinensis HOM05D002755 ORTHO05D002910 7.1e-06 54.3 41 61.0
PGSC0003DMG400028545 Solanum tuberosum HOM05D002755 ORTHO05D002910 7.1e-06 54.3 86 45.3
PGSC0003DMG400028621 Solanum tuberosum HOM05D002755 ORTHO05D002910 7.1e-06 54.3 79 41.8
CDE02G4168 Ceratophyllum demersum HOM05D002755 ORTHO05D002910 9.3e-06 53.9 38 57.9
CDE03G0056 Ceratophyllum demersum HOM05D002755 ORTHO05D002910 9.3e-06 53.9 32 71.9
FAN02G0175 Fragaria x ananassa HOM05D002755 ORTHO05D002910 9.3e-06 53.9 80 43.8
Nitab4.5_0000151g0100 Nicotiana tabacum HOM05D002755 ORTHO05D002910 9.3e-06 53.9 34 70.6
Oeu015233.1 Olea europaea HOM05D002755 ORTHO05D002910 9.3e-06 53.9 60 53.3
Sopen12g022080 Solanum pennellii HOM05D002755 ORTHO05D002910 9.3e-06 53.9 74 45.9


User provided reference genes

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