Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 0.0e+00 1193.3 693 100.0
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 4.7e-310 1067.4 736 88.5
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 4.3e-295 1017.7 734 85.7
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.1e-287 993.0 771 78.0
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 4.3e-287 991.1 760 73.9
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 3.1e-285 984.9 733 82.7
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 5.8e-284 980.7 733 82.3
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 3.2e-282 974.9 733 80.4
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 5.4e-282 974.2 735 81.4
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 7.8e-281 970.3 735 83.1
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 4.3e-279 964.5 735 81.4
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 1.4e-277 959.5 733 77.9
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.5e-276 956.1 735 79.9
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 5.8e-276 954.1 735 80.5
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 3.7e-275 951.4 735 78.6
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 4.6e-273 944.5 760 74.3
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 7.6e-268 927.2 733 78.9
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 7.1e-258 894.0 736 77.0
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 3.3e-247 858.6 738 71.0
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 4.2e-234 815.1 753 69.7
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 6.7e-208 728.0 795 52.3
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 6.3e-206 721.5 750 60.4
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 3.0e-200 702.6 753 59.0
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 2.6e-199 699.5 749 60.1
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 9.7e-199 697.6 750 60.9
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 9.7e-199 697.6 750 60.9
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 4.8e-198 695.3 755 59.1
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.0e-195 687.6 752 62.0
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-195 686.0 752 61.8
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 3.8e-195 685.6 630 59.7
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 6.5e-195 684.9 753 61.9
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 1.1e-194 684.1 743 59.6
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 1.5e-194 683.7 641 58.5
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-194 683.3 753 61.8
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.9e-194 683.3 751 58.5
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 4.7e-193 678.7 751 59.9
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 6.1e-193 678.3 754 58.8
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 6.8e-192 674.9 765 59.5
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.5e-191 673.7 754 58.2
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 4.4e-191 672.2 769 58.0
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.1e-189 667.5 775 56.9
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 2.4e-189 666.4 787 49.9
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 4.1e-189 665.6 747 58.9
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 7.0e-189 664.8 742 59.7
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 5.9e-188 661.8 758 58.3
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.5e-186 657.1 773 57.1
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.9e-186 656.8 745 58.0
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 5.5e-186 655.2 762 57.6
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 7.2e-186 654.8 760 57.8
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.2e-185 654.1 746 56.7
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 2.8e-185 652.9 748 57.4
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 3.6e-185 652.5 776 55.4
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 6.1e-185 651.7 762 57.0
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.0e-184 651.0 750 58.1
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 2.3e-184 649.8 745 57.2
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 5.2e-184 648.7 761 56.5
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 2.6e-183 646.4 748 57.4
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 4.4e-183 645.6 791 50.7
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 5.7e-183 645.2 752 59.2
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 7.5e-183 644.8 770 56.6
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 9.8e-183 644.4 788 54.4
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.3e-182 644.0 754 59.0
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.7e-182 643.7 752 59.2
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.2e-182 643.3 752 56.8
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 2.2e-182 643.3 744 57.4
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 6.3e-182 641.7 750 58.7
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 8.3e-182 641.3 763 58.1
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 9.2e-181 637.9 755 57.0
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 1.2e-180 637.5 751 57.9
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-180 637.5 755 56.7
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 1.2e-180 637.5 746 56.4
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.0e-180 636.7 755 56.8
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.0e-180 636.7 755 56.7
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 5.9e-180 635.2 827 53.0
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 1.7e-179 633.6 764 55.4
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.3e-179 633.3 748 57.2
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 6.6e-179 631.7 768 56.4
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.5e-178 630.6 755 55.9
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 2.5e-178 629.8 755 59.1
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 4.3e-178 629.0 770 55.2
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 7.3e-178 628.2 770 54.9
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.2e-177 627.5 743 54.6
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 2.8e-177 626.3 755 58.8
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.4e-176 624.0 779 55.2
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.5e-175 620.5 751 57.3
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 1.3e-174 617.5 751 56.2
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.7e-174 617.1 845 51.2
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 3.7e-174 615.9 757 57.1
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 3.2e-173 612.8 759 54.5
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 7.0e-173 611.7 763 55.6
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 9.2e-173 611.3 749 56.6
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 1.0e-171 607.8 747 57.8
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 5.6e-170 602.1 637 55.1
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.5e-167 594.0 745 57.2
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.4e-165 586.6 843 52.9
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 3.2e-165 586.3 791 51.8
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 9.2e-165 584.7 748 54.9
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.6e-164 583.9 688 58.3
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 4.6e-164 582.4 787 52.6
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.1e-160 571.2 745 54.0
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 3.0e-155 553.1 793 52.2
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 6.4e-150 535.4 753 54.2
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 2.7e-148 530.0 776 43.9
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 3.0e-147 526.6 793 49.1
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 9.9e-143 511.5 750 49.9
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 6.9e-136 488.8 565 55.0
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.2e-132 478.0 776 48.6
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.8e-128 464.2 770 46.6
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.3e-126 458.0 549 56.8
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 1.6e-124 451.1 641 46.0
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 5.1e-123 446.0 722 48.2
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.9e-122 444.1 542 52.8
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.4e-112 411.4 454 52.2
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 1.8e-112 411.0 753 47.1
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 9.4e-109 398.7 634 43.1
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 6.1e-108 396.0 639 43.5
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 8.8e-107 392.1 483 50.1
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 1.9e-93 347.8 723 37.6
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 7.2e-93 345.9 467 46.9
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.4e-91 341.7 442 46.8
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 4.5e-87 326.6 441 46.3
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 5.4e-80 303.1 318 66.7
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 9.1e-80 302.4 317 69.7
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.2e-78 297.7 341 64.8
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.5e-77 294.3 379 48.0
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 4.4e-74 283.5 307 67.8
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 2.3e-70 271.2 367 45.2
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 1.5e-58 231.9 739 30.3
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 6.6e-54 216.5 837 34.2
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 4.7e-52 210.3 330 40.9
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 5.2e-51 206.8 202 52.5
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.3e-45 187.2 126 73.8
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 4.4e-42 177.2 697 29.3
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-35 154.5 89 82.0
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.9e-33 147.1 181 48.1
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.0e-31 140.2 98 72.4
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 1.0e-30 139.4 93 80.6
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.5e-26 125.6 96 63.5
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.7e-25 122.1 141 49.6
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 4.2e-24 117.5 136 57.4
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-24 117.5 103 58.3
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.1e-22 110.5 226 34.5
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.1e-21 109.4 233 33.9
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.5e-21 109.0 150 48.0
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 7.4e-21 106.7 117 56.4
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-20 105.9 84 65.5
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.6e-20 104.4 76 69.7
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.8e-20 104.0 60 81.7
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.8e-20 104.0 226 33.2
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 6.2e-20 103.6 142 50.0
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-18 99.0 83 59.0
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 1.3e-17 95.9 158 71.5
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 2.9e-17 94.7 66 71.2
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-16 92.8 66 66.7
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-16 92.8 142 40.8
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 1.9e-16 92.0 57 77.2
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.1e-14 84.0 70 60.0
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 6.7e-14 83.6 126 45.2
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-13 82.8 159 37.1
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-13 82.0 77 57.1
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 2.5e-13 81.6 157 65.0
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.6e-13 80.5 61 63.9
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.4e-11 75.1 60 66.7
Ah.15g100450 Amaranthus hybridus HOM05D035932 ORTHO05D026494 4.0e-11 74.3 57 64.9
Ah.15g100480 Amaranthus hybridus HOM05D035932 ORTHO05D026494 4.0e-11 74.3 57 64.9
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 1.9e-08 65.5 32 93.8
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 4.2e-08 64.3 109 41.3
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 7.1e-08 63.5 41 70.7
A02p09200 Brassica napus HOM05D061471 ORTHO05D041986 1.6e-07 62.4 32 84.4
BraA02t05987Z Brassica rapa HOM05D061471 ORTHO05D041986 1.6e-07 62.4 32 84.4
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.9e-06 57.8 32 78.1
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 6.7e-06 57.0 57 50.9


User provided reference genes

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