Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 3.0e-88 328.6 172 100.0
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 3.0e-88 328.6 172 100.0
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 1.9e-87 325.9 172 98.8
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 4.3e-87 324.7 172 98.3
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 5.6e-87 324.3 172 98.3
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 5.6e-87 324.3 172 98.3
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 5.6e-87 324.3 172 98.3
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 3.6e-86 321.6 172 97.7
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 5.2e-85 317.8 172 96.5
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 5.8e-84 314.3 173 96.5
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 1.9e-82 309.3 172 91.9
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 2.4e-82 308.9 172 91.3
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 1.2e-81 306.6 172 93.0
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 1.7e-80 302.8 174 90.2
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 1.7e-80 302.8 173 90.2
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 3.4e-76 288.5 173 85.5
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 3.0e-72 275.4 172 82.6
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 7.1e-66 254.2 175 76.0
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.0e-64 250.4 174 77.0
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.0e-64 250.4 174 77.0
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 3.0e-64 248.8 174 76.4
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 3.0e-64 248.8 174 77.0
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 3.9e-64 248.4 174 76.4
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 8.1e-62 240.7 174 74.1
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.8e-61 239.6 174 74.7
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 1.8e-61 239.6 174 72.4
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 2.4e-61 239.2 179 72.6
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 5.2e-61 238.0 175 73.7
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 1.2e-60 236.9 175 72.0
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.2e-60 236.9 175 73.7
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 1.2e-60 236.9 175 73.1
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 3.4e-60 235.3 171 74.3
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 3.4e-60 235.3 175 73.1
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 4.4e-60 235.0 174 71.8
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 5.8e-60 234.6 174 73.6
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 5.8e-60 234.6 171 73.7
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 5.8e-60 234.6 175 72.6
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 5.8e-60 234.6 174 71.3
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 7.6e-60 234.2 174 71.8
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 1.7e-59 233.0 174 71.8
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 2.9e-59 232.3 175 72.6
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 2.9e-59 232.3 175 72.6
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 2.9e-59 232.3 175 72.6
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 3.8e-59 231.9 174 72.4
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 6.4e-59 231.1 174 72.4
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 6.4e-59 231.1 174 71.8
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 1.1e-58 230.3 175 71.4
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 1.4e-58 229.9 175 71.4
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 4.2e-58 228.4 175 70.9
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 4.2e-58 228.4 175 72.0
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 4.2e-58 228.4 166 74.7
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 5.4e-58 228.0 167 73.1
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 5.4e-58 228.0 175 71.4
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 9.3e-58 227.3 171 71.3
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 1.2e-57 226.9 175 71.4
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 1.6e-57 226.5 166 73.5
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 2.7e-57 225.7 175 71.4
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 4.6e-57 224.9 175 69.7
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 6.0e-57 224.6 175 69.1
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 6.0e-57 224.6 174 70.1
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 1.0e-56 223.8 179 70.4
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 1.3e-56 223.4 175 71.4
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 1.3e-56 223.4 175 67.4
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 1.7e-56 223.0 176 68.8
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 3.0e-56 222.2 177 67.8
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 3.9e-56 221.9 175 69.7
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 3.9e-56 221.9 174 69.5
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 6.6e-56 221.1 152 81.6
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 6.6e-56 221.1 175 68.6
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 8.7e-56 220.7 175 69.1
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 1.5e-55 219.9 175 70.3
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 1.5e-55 219.9 175 68.6
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 1.9e-55 219.5 175 69.7
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 3.3e-55 218.8 174 68.4
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 7.3e-55 217.6 175 67.4
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 9.6e-55 217.2 174 67.8
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 9.6e-55 217.2 174 67.8
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 9.6e-55 217.2 153 73.9
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 1.3e-54 216.9 175 67.4
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 1.3e-54 216.9 175 68.0
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 2.1e-54 216.1 174 69.0
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 2.1e-54 216.1 166 69.9
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 2.4e-50 202.6 165 67.3
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 4.2e-50 201.8 165 65.5
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 1.2e-49 200.3 172 65.7
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 2.7e-49 199.1 176 64.8
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 3.5e-49 198.7 168 65.5
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 7.9e-49 197.6 168 64.3
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 8.7e-48 194.1 151 72.8
Mapoly0066s0110 Marchantia polymorpha HOM05D005631 ORTHO05D006765 8.7e-48 194.1 171 60.2
SEGI_31870 Sequoiadendron giganteum HOM05D005631 ORTHO05D006765 1.1e-47 193.7 141 70.9
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 1.5e-47 193.4 153 71.2
COL.COLO4_11152 Corchorus olitorius HOM05D005631 ORTHO05D006765 1.9e-47 193.0 140 72.9
Pp3c4_18980 Physcomitrium patens HOM05D005631 ORTHO05D006765 1.1e-45 187.2 174 59.8
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 6.0e-41 171.4 174 56.9
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 1.3e-40 170.2 138 71.0
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 6.7e-40 167.9 103 91.3
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 5.6e-39 164.9 141 66.7
SMO134G0149 Selaginella moellendorffii HOM05D005631 ORTHO05D006765 8.2e-38 161.0 178 53.4
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 4.0e-37 158.7 155 63.2
VMungo0540G1856 Vigna mungo HOM05D005631 ORTHO05D006765 3.4e-36 155.6 117 70.1
Peaxi162Scf00635g00621 Petunia axillaris HOM05D005631 ORTHO05D006765 4.5e-36 155.2 143 60.1
Atru.chr3.4121 Acer truncatum HOM05D005631 ORTHO05D006765 2.9e-35 152.5 173 57.8
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 2.9e-35 152.5 131 66.4
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 4.9e-35 151.8 131 66.4
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 2.5e-34 149.4 153 58.2
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 1.9e-26 123.2 112 65.2
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 4.2e-26 122.1 115 67.8
AagrBONN_evm.TU.Sc2ySwM_117.69 Anthoceros agrestis HOM05D005631 ORTHO05D006765 6.1e-25 118.2 172 41.3
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 1.9e-23 113.2 107 62.6
MCO05G013 Micromonas commoda HOM05D005631 ORTHO05D006765 1.9e-23 113.2 166 45.2
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 3.3e-23 112.5 65 96.9
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 7.4e-23 111.3 80 82.5
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 9.7e-23 110.9 65 95.4
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 1.3e-22 110.5 110 65.5
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 1.1e-21 107.5 66 93.9
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 2.4e-21 106.3 65 90.8
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 6.9e-21 104.8 65 93.8
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 9.1e-21 104.4 65 90.8
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 3.6e-17 92.4 107 57.9
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 6.3e-14 81.6 68 69.1
BcaC02g08205 Brassica carinata HOM05D005631 ORTHO05D006765 8.2e-14 81.3 49 89.8
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 1.4e-13 80.5 47 95.7
Sabra19G0122200 Salix brachista HOM05D005631 ORTHO05D006765 1.8e-13 80.1 90 63.3
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 3.1e-13 79.3 60 71.7
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 5.3e-13 78.6 47 93.6
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 2.0e-12 76.6 47 89.4
Sabra16G0029400 Salix brachista HOM05D005631 ORTHO05D006765 4.5e-12 75.5 90 60.0
Cre01.g044000 Chlamydomonas reinhardtii HOM05D005631 ORTHO05D006765 1.0e-11 74.3 147 40.1
Oeu008088.1 Olea europaea HOM05D005631 ORTHO05D006765 3.2e-10 69.3 83 45.8
CDE02G1786 Ceratophyllum demersum HOM05D005631 ORTHO05D006765 5.5e-10 68.6 122 45.9
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 1.6e-09 67.0 88 59.1
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 1.8e-08 63.5 67 67.2
CBR_g4734 Chara braunii HOM05D005631 ORTHO05D006765 2.6e-07 59.7 106 42.5
BcaC02g09329 Brassica carinata HOM05D005631 ORTHO05D006765 7.4e-07 58.2 64 60.9
Aqoxy1G01289 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 9.7e-07 57.8 50 70.0
Cc05_g02510 Coffea canephora HOM05D005631 ORTHO05D006765 6.3e-06 55.1 109 45.0


User provided reference genes

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