Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 1.3e-114 416.4 213 100.0
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 4.9e-93 344.7 257 75.1
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 1.4e-92 343.2 257 74.7
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 1.1e-89 333.6 257 72.8
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 2.8e-88 328.9 257 73.2
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 2.8e-88 328.9 257 73.2
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 5.5e-84 314.7 256 69.5
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 2.1e-83 312.8 257 69.6
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 4.6e-83 311.6 256 68.4
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 6.0e-83 311.2 256 69.5
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 3.9e-82 308.5 256 68.4
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 1.5e-81 306.6 256 68.4
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 6.2e-80 301.2 241 71.8
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 1.4e-76 290.0 256 66.4
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 1.6e-75 286.6 251 66.1
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 4.6e-75 285.0 256 63.7
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 9.4e-68 260.8 260 58.8
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 9.7e-65 250.8 256 58.2
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 3.7e-64 248.8 255 55.7
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 6.3e-64 248.1 257 57.2
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 8.2e-64 247.7 255 55.7
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 1.1e-63 247.3 255 55.3
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 2.4e-63 246.1 257 56.8
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 1.5e-62 243.4 254 54.7
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 2.6e-62 242.7 254 57.1
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 5.9e-62 241.5 255 56.9
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 1.7e-61 240.0 254 55.5
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 3.8e-61 238.8 256 55.1
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 2.5e-60 236.1 256 54.7
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 7.2e-60 234.6 254 53.5
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 2.7e-59 232.6 258 51.9
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 3.6e-59 232.3 255 54.1
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 3.6e-59 232.3 255 54.5
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 6.1e-59 231.5 252 54.4
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 6.1e-59 231.5 252 54.4
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 6.1e-59 231.5 257 52.9
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 5.1e-58 228.4 253 54.2
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 1.1e-57 227.3 252 54.8
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.5e-57 226.9 255 54.5
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 2.0e-57 226.5 253 53.8
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 2.0e-57 226.5 254 52.0
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 2.0e-57 226.5 254 52.8
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 2.0e-57 226.5 257 54.5
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 2.6e-57 226.1 255 52.5
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 7.4e-57 224.6 259 52.1
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 1.3e-56 223.8 252 52.4
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 1.7e-56 223.4 257 53.3
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 2.2e-56 223.0 257 53.7
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 2.8e-56 222.6 206 63.6
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 3.7e-56 222.2 272 50.7
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 1.1e-55 220.7 231 55.8
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 1.1e-55 220.7 257 52.1
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 1.4e-55 220.3 256 52.7
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 1.8e-55 219.9 254 52.0
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 3.1e-55 219.2 256 51.2
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 3.1e-55 219.2 256 51.2
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 3.1e-55 219.2 256 52.0
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 3.1e-55 219.2 256 52.0
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 5.3e-55 218.4 256 52.0
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 1.2e-54 217.2 254 50.8
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 1.6e-54 216.9 258 51.2
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 2.6e-54 216.1 256 50.8
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 5.9e-54 214.9 256 52.0
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 5.9e-54 214.9 247 52.2
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 7.7e-54 214.5 255 51.8
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 1.0e-53 214.2 258 52.7
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.0e-53 214.2 270 51.1
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.3e-53 213.8 257 52.5
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 2.2e-53 213.0 253 49.4
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 3.8e-53 212.2 252 51.2
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 3.8e-53 212.2 257 52.5
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 3.8e-53 212.2 257 51.4
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 5.0e-53 211.8 253 50.6
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 6.5e-53 211.5 226 54.0
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 8.5e-53 211.1 266 50.8
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 8.5e-53 211.1 254 48.8
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.5e-52 210.3 253 50.2
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 1.9e-52 209.9 258 50.4
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 2.5e-52 209.5 257 50.2
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 2.5e-52 209.5 255 50.2
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 3.2e-52 209.1 255 49.4
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 5.5e-52 208.4 258 50.4
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 5.5e-52 208.4 280 47.9
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 6.1e-51 204.9 260 48.8
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 1.4e-50 203.8 260 49.6
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 6.7e-50 201.4 257 50.2
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 1.5e-49 200.3 254 48.8
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 7.5e-49 198.0 254 46.9
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 2.2e-48 196.4 304 44.1
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 3.7e-48 195.7 260 46.5
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 6.3e-48 194.9 256 44.1
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 1.8e-47 193.4 241 46.9
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 4.1e-47 192.2 260 45.4
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 4.1e-47 192.2 241 48.1
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 2.7e-46 189.5 262 45.4
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 2.7e-46 189.5 241 49.8
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 1.0e-45 187.6 232 49.6
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 1.9e-44 183.3 240 47.9
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 8.0e-43 177.9 255 44.3
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 1.0e-42 177.6 230 46.5
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 1.4e-42 177.2 243 47.7
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 1.8e-42 176.8 257 44.4
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 2.4e-39 166.4 218 47.7
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 2.4e-39 166.4 255 40.8
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 2.7e-38 162.9 230 43.5
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 6.1e-35 151.8 201 47.8
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.3e-34 149.8 167 51.5
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 2.0e-33 146.7 207 46.4
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 2.2e-32 143.3 164 51.2
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 2.8e-32 142.9 245 39.2
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 5.9e-30 135.2 219 39.7
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 6.6e-29 131.7 76 84.2
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 4.3e-28 129.0 114 62.3
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 9.5e-28 127.9 181 44.8
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 2.1e-27 126.7 198 42.9
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 3.6e-27 125.9 254 35.8
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 4.7e-27 125.6 210 41.0
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 2.9e-24 116.3 114 60.5
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 3.7e-24 115.9 113 55.8
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.8e-23 113.6 222 40.1
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 3.5e-22 109.4 144 47.2
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 1.5e-20 104.0 253 34.0
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 1.6e-19 100.5 168 41.7
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 1.7e-16 90.5 72 69.4
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 2.4e-15 86.7 78 59.0
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 2.4e-15 86.7 79 59.5
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 1.0e-13 81.3 84 50.0
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 3.3e-12 76.3 73 58.9
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 9.5e-12 74.7 73 53.4
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-11 73.9 60 68.3
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 2.6e-09 66.6 263 28.1
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 3.4e-09 66.2 53 60.4
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 2.7e-06 56.6 26 92.3


User provided reference genes

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