Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 8.0e-223 776.9 440 100.0
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 2.0e-205 719.2 440 89.1
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 6.0e-202 707.6 440 88.2
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.9e-201 704.9 434 88.0
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 5.1e-201 704.5 440 90.0
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 4.4e-197 691.4 440 88.6
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 3.8e-196 688.3 440 90.9
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 1.3e-193 679.9 440 84.8
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 1.5e-192 676.4 441 87.3
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 3.6e-191 671.8 441 86.2
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 1.7e-188 662.9 441 83.4
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.0e-169 600.5 434 81.6
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 1.0e-161 573.9 439 74.5
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 2.6e-128 463.0 362 66.3
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 4.4e-128 462.2 361 66.5
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 1.6e-125 453.8 360 65.6
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 2.7e-125 453.0 345 67.2
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 3.5e-125 452.6 345 67.2
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 3.5e-125 452.6 353 66.9
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 1.0e-124 451.1 347 67.1
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.3e-124 450.7 362 64.9
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 3.8e-124 449.1 363 65.0
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 5.0e-124 448.7 347 67.1
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 6.5e-124 448.4 347 67.1
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 1.1e-123 447.6 347 67.4
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 5.5e-123 445.3 345 66.7
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 7.2e-123 444.9 347 66.9
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 9.4e-123 444.5 377 63.7
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 9.4e-123 444.5 345 66.7
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 1.6e-122 443.7 346 66.8
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 3.6e-122 442.6 342 68.1
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 6.1e-122 441.8 344 66.0
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 1.0e-121 441.0 345 67.8
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 2.6e-120 436.4 345 67.0
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 3.4e-120 436.0 344 65.1
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 1.3e-119 434.1 347 63.7
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 2.2e-119 433.3 344 64.8
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 2.8e-119 433.0 344 65.4
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 2.8e-119 433.0 349 64.2
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 6.3e-119 431.8 352 64.5
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 6.3e-119 431.8 348 65.8
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 8.3e-119 431.4 348 66.1
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 8.3e-119 431.4 349 65.6
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 2.4e-118 429.9 346 64.5
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 4.1e-118 429.1 347 65.4
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 4.1e-118 429.1 348 64.4
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 5.4e-118 428.7 353 63.2
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 1.2e-117 427.6 348 65.2
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 1.2e-117 427.6 349 65.6
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 1.6e-117 427.2 348 65.2
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 3.5e-117 426.0 350 62.9
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 1.3e-116 424.1 347 64.3
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 1.7e-116 423.7 348 62.1
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 2.3e-116 423.3 347 63.1
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 2.3e-116 423.3 355 63.9
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 2.3e-116 423.3 351 64.4
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 6.6e-116 421.8 361 62.6
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 6.6e-116 421.8 333 65.2
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 6.6e-116 421.8 355 63.9
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 1.5e-115 420.6 348 63.8
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 1.9e-115 420.2 357 63.6
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 4.2e-115 419.1 345 63.2
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 9.5e-115 417.9 354 62.1
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 9.5e-115 417.9 398 57.5
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 1.2e-114 417.5 381 60.4
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 6.1e-114 415.2 352 62.8
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 1.8e-113 413.7 333 64.3
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 2.3e-113 413.3 350 62.0
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 8.9e-113 411.4 343 61.8
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 1.2e-112 411.0 370 59.5
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 1.5e-112 410.6 346 61.8
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 3.4e-112 409.5 346 61.8
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 5.7e-112 408.7 352 61.6
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 5.7e-112 408.7 354 59.3
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 1.3e-111 407.5 351 60.4
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 2.8e-111 406.4 337 63.2
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 8.3e-111 404.8 347 61.4
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 2.4e-110 403.3 368 59.0
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 5.4e-110 402.1 343 61.2
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 9.2e-110 401.4 343 60.3
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 1.6e-109 400.6 312 67.3
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 2.7e-109 399.8 353 60.1
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 2.7e-109 399.8 352 60.8
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 3.5e-109 399.4 419 53.2
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 1.2e-106 391.0 342 59.4
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.1e-106 390.2 334 61.7
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 2.1e-106 390.2 349 61.0
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 2.8e-106 389.8 343 61.5
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 1.3e-103 380.9 348 58.9
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 1.7e-103 380.6 338 59.2
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 1.4e-102 377.5 356 57.9
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 9.8e-96 354.8 293 63.8
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 4.3e-91 339.3 241 71.0
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 2.4e-86 323.6 364 49.2
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 2.7e-85 320.1 375 48.3
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 2.3e-84 317.0 261 63.2
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 2.3e-84 317.0 357 51.3
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 3.0e-84 316.6 348 51.7
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 2.5e-75 287.0 343 50.1
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.1e-74 283.9 213 68.1
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 7.1e-70 268.9 341 45.5
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 5.6e-67 259.2 210 65.7
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 1.3e-66 258.1 355 42.3
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 4.8e-66 256.1 206 65.0
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 4.9e-63 246.1 352 42.3
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 2.1e-58 230.7 343 42.6
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.3e-52 211.5 224 50.9
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 1.4e-38 164.9 143 60.1
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 2.4e-33 147.5 152 52.6
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 2.5e-30 137.5 243 37.9
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 5.3e-25 119.8 77 74.0
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 1.3e-18 98.6 102 52.9
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 1.7e-18 98.2 93 55.9
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.4e-17 95.1 108 49.1
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 9.1e-17 92.4 341 25.2
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 2.0e-16 91.3 119 48.7
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 1.7e-15 88.2 199 31.2
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 2.6e-11 74.3 343 26.2


User provided reference genes

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