Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19265 Brassica carinata HOM05D006351 ORTHO05D007796 0.0e+00 1151.7 594 100.0
C09p65820 Brassica napus HOM05D006351 ORTHO05D007796 2.4e-307 1058.1 588 93.2
A10p26650 Brassica napus HOM05D006351 ORTHO05D007796 3.4e-293 1011.1 589 90.0
BraA10t44723Z Brassica rapa HOM05D006351 ORTHO05D007796 5.8e-285 983.8 593 88.2
BolC9t59403H Brassica oleracea HOM05D006351 ORTHO05D007796 5.5e-283 977.2 588 88.1
Sp6g32460 Schrenkiella parvula HOM05D006351 ORTHO05D007796 3.5e-253 878.2 609 78.3
Thhalv10013026m.g Eutrema salsugineum HOM05D006351 ORTHO05D007796 6.8e-225 784.3 602 70.9
AL6G21650 Arabidopsis lyrata HOM05D006351 ORTHO05D007796 7.0e-222 774.2 604 70.5
AT5G11030 Arabidopsis thaliana HOM05D006351 ORTHO05D007796 2.3e-212 742.7 607 68.5
Carub.0006s0954 Capsella rubella HOM05D006351 ORTHO05D007796 3.0e-212 742.3 607 67.5
CARHR202260 Cardamine hirsuta HOM05D006351 ORTHO05D007796 6.2e-186 654.8 486 71.8
THA.LOC104815006 Tarenaya hassleriana HOM05D006351 ORTHO05D007796 6.9e-177 624.8 591 58.5
Aa31LG3G16100 Aethionema arabicum HOM05D006351 ORTHO05D007796 7.1e-174 614.8 604 59.1
Dinv03414 Davidia involucrata HOM05D006351 ORTHO05D007796 2.0e-139 500.4 613 47.0
Thecc.09G019400 Theobroma cacao HOM05D006351 ORTHO05D007796 1.3e-135 487.6 618 44.7
Prupe.1G486500 Prunus persica HOM05D006351 ORTHO05D007796 2.0e-131 473.8 609 46.1
MD15G1131200 Malus domestica HOM05D006351 ORTHO05D007796 2.6e-131 473.4 596 47.3
Manes.03G011600 Manihot esculenta HOM05D006351 ORTHO05D007796 4.4e-131 472.6 607 45.5
TWI34G1294 Tripterygium wilfordii HOM05D006351 ORTHO05D007796 5.7e-131 472.2 617 44.4
Duzib150G0289 Durio zibethinus HOM05D006351 ORTHO05D007796 8.2e-130 468.4 610 43.8
Atru.chr7.2503_Atru.chr7.2504 Acer truncatum HOM05D006351 ORTHO05D007796 5.3e-129 465.7 612 42.6
Sabra06G0202800 Salix brachista HOM05D006351 ORTHO05D007796 5.3e-129 465.7 607 45.6
GSVIVG01035918001 Vitis vinifera HOM05D006351 ORTHO05D007796 7.0e-129 465.3 606 43.6
CiPaw.08G008200 Carya illinoinensis HOM05D006351 ORTHO05D007796 1.2e-128 464.5 607 44.3
Potri.006G259600 Populus trichocarpa HOM05D006351 ORTHO05D007796 2.0e-128 463.8 609 44.5
QL02p020121 Quercus lobata HOM05D006351 ORTHO05D007796 3.8e-127 459.5 671 41.6
Haze_21455 Corylus avellana HOM05D006351 ORTHO05D007796 8.5e-127 458.4 609 43.7
TAR625G1335 Trochodendron aralioides HOM05D006351 ORTHO05D007796 8.5e-127 458.4 608 44.9
CANSAT54G0019 Cannabis sativa HOM05D006351 ORTHO05D007796 1.5e-126 457.6 604 44.0
Psat6g028600 Pisum sativum HOM05D006351 ORTHO05D007796 1.0e-124 451.4 607 42.8
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 3.0e-124 449.9 591 43.3
Sopen01g038480 Solanum pennellii HOM05D006351 ORTHO05D007796 5.7e-123 445.7 597 43.4
Gohir.A07G030500 Gossypium hirsutum HOM05D006351 ORTHO05D007796 1.3e-122 444.5 616 43.5
VMungo0647G0679 Vigna mungo HOM05D006351 ORTHO05D007796 3.7e-122 443.0 606 42.4
Ciclev10007789m.g Citrus clementina HOM05D006351 ORTHO05D007796 6.3e-122 442.2 608 42.3
Gohir.D07G034400 Gossypium hirsutum HOM05D006351 ORTHO05D007796 6.3e-122 442.2 616 43.0
Lj5g0002049 Lotus japonicus HOM05D006351 ORTHO05D007796 1.4e-121 441.0 605 43.1
Medtr4g014840 Medicago truncatula HOM05D006351 ORTHO05D007796 1.4e-121 441.0 586 42.7
Phvul.001G047200 Phaseolus vulgaris HOM05D006351 ORTHO05D007796 2.4e-121 440.3 608 42.1
Solyc01g094670.4 Solanum lycopersicum HOM05D006351 ORTHO05D007796 2.4e-121 440.3 597 42.5
PGR119G2225 Punica granatum HOM05D006351 ORTHO05D007796 1.6e-120 437.6 586 43.0
CsaV3_4G036840 Cucumis sativus L. HOM05D006351 ORTHO05D007796 2.7e-120 436.8 604 42.2
vmacro11222 Vaccinium macrocarpon HOM05D006351 ORTHO05D007796 5.9e-120 435.6 616 41.9
arahy.Tifrunner.gnm1.ann1.52204A Arachis hypogaea HOM05D006351 ORTHO05D007796 7.7e-120 435.3 632 41.8
Oeu028190.1 Olea europaea HOM05D006351 ORTHO05D007796 1.0e-119 434.9 591 42.5
Lalb_Chr22g0361451 Lupinus albus HOM05D006351 ORTHO05D007796 1.3e-119 434.5 604 42.4
Nn8g39723 Nelumbo nucifera HOM05D006351 ORTHO05D007796 1.3e-119 434.5 592 42.2
MSTRG.9683 Avicennia marina HOM05D006351 ORTHO05D007796 2.3e-119 433.7 607 41.5
Peaxi162Scf00116g00510 Petunia axillaris HOM05D006351 ORTHO05D007796 6.5e-119 432.2 587 43.4
arahy.Tifrunner.gnm1.ann1.5RBZ70 Arachis hypogaea HOM05D006351 ORTHO05D007796 8.6e-119 431.8 632 41.6
Eucgr.C01685 Eucalyptus grandis HOM05D006351 ORTHO05D007796 1.9e-118 430.6 607 41.8
arahy.Tifrunner.gnm1.ann1.DQM65W Arachis hypogaea HOM05D006351 ORTHO05D007796 2.5e-118 430.3 632 41.3
Cfa013099 Carpinus fangiana HOM05D006351 ORTHO05D007796 5.5e-118 429.1 612 42.6
FvH4_2g28280 Fragaria vesca HOM05D006351 ORTHO05D007796 1.6e-117 427.6 553 44.7
Actinidia22310 Actinidia chinensis HOM05D006351 ORTHO05D007796 4.7e-117 426.0 620 41.0
TPR.G32564 Trifolium pratense HOM05D006351 ORTHO05D007796 8.0e-117 425.2 592 42.9
DCAR_018801 Daucus carota HOM05D006351 ORTHO05D007796 3.0e-116 423.3 617 39.1
ClCG05G016570 Citrullus lanatus HOM05D006351 ORTHO05D007796 2.6e-115 420.2 655 39.4
Sc06g0000450 Simmondsia chinensis HOM05D006351 ORTHO05D007796 8.3e-114 415.2 613 40.3
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.1e-113 414.8 606 39.6
RcHm_v2.0_Chr6g0297191 Rosa chinensis HOM05D006351 ORTHO05D007796 1.4e-113 414.5 579 43.7
MBI14_g15653_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 3.1e-113 413.3 612 40.2
AUR62031572 Chenopodium quinoa HOM05D006351 ORTHO05D007796 1.5e-110 404.4 608 39.3
Lj8A733T33 Lonicera japonica HOM05D006351 ORTHO05D007796 1.5e-110 404.4 670 38.5
Aqoxy7G03341 Aquilegia oxysepala HOM05D006351 ORTHO05D007796 3.6e-109 399.8 609 39.1
CSS0041020 Camellia sinensis var. sinensis HOM05D006351 ORTHO05D007796 1.4e-108 397.9 609 39.6
Gorai.001G036000 Gossypium raimondii HOM05D006351 ORTHO05D007796 1.8e-108 397.5 542 43.9
HanXRQChr16g0511151 Helianthus annuus HOM05D006351 ORTHO05D007796 3.4e-107 393.3 610 38.7
Migut.G00796 Erythranthe guttata HOM05D006351 ORTHO05D007796 7.5e-107 392.1 618 39.2
EL10Ac2g04151 Beta vulgaris HOM05D006351 ORTHO05D007796 9.8e-107 391.7 669 35.6
arahy.Tifrunner.gnm1.ann1.7H8NL8 Arachis hypogaea HOM05D006351 ORTHO05D007796 6.4e-106 389.0 632 39.4
Lsat_1_v5_gn_6_115401 Lactuca sativa HOM05D006351 ORTHO05D007796 1.1e-105 388.3 608 39.3
Hund03479 Selenicereus undatus HOM05D006351 ORTHO05D007796 7.0e-105 385.6 656 37.0
Cc08_g00180 Coffea canephora HOM05D006351 ORTHO05D007796 4.3e-102 376.3 584 41.4
COL.COLO4_18917 Corchorus olitorius HOM05D006351 ORTHO05D007796 2.8e-101 373.6 616 39.0
ECA246G3333 Erigeron canadensis HOM05D006351 ORTHO05D007796 6.2e-101 372.5 573 40.0
Cpa.g.sc187.30 Carica papaya HOM05D006351 ORTHO05D007796 2.3e-100 370.5 505 44.4
Glyma.17G215800 Glycine max HOM05D006351 ORTHO05D007796 5.2e-100 369.4 606 39.1
ATR0629G052 Amborella trichopoda HOM05D006351 ORTHO05D007796 9.8e-99 365.2 577 36.9
AUR62012449 Chenopodium quinoa HOM05D006351 ORTHO05D007796 7.8e-96 355.5 526 40.3
Os08g0290100 Oryza sativa ssp. japonica HOM05D006351 ORTHO05D007796 2.9e-90 337.0 616 35.6
HPP92_020077 Vanilla planifolia HOM05D006351 ORTHO05D007796 6.4e-90 335.9 614 36.0
PSO782G3777 Papaver somniferum HOM05D006351 ORTHO05D007796 2.4e-89 334.0 503 40.8
SGA_v2.0_scaffold12G06223 Striga asiatica HOM05D006351 ORTHO05D007796 9.2e-89 332.0 660 34.8
MELO3C016986.2 Cucumis melo HOM05D006351 ORTHO05D007796 1.9e-86 324.3 479 40.7
Hma1.2p1_0043F.1_g025900 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 8.1e-85 318.9 423 42.6
Sed0014901 Sechium edule HOM05D006351 ORTHO05D007796 1.9e-81 307.8 421 43.0
unitig_0.g2412 Utricularia gibba HOM05D006351 ORTHO05D007796 2.4e-81 307.4 579 34.7
FAN24G1918 Fragaria x ananassa HOM05D006351 ORTHO05D007796 3.6e-77 293.5 379 44.1
FAN20G2359 Fragaria x ananassa HOM05D006351 ORTHO05D007796 9.0e-76 288.9 379 43.3
Hma1.2p1_0043F.1_g025890 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 1.1e-73 282.0 396 40.9
FAN15G0846 Fragaria x ananassa HOM05D006351 ORTHO05D007796 1.4e-73 281.6 374 42.5
Nitab4.5_0002992g0070 Nicotiana tabacum HOM05D006351 ORTHO05D007796 4.0e-68 263.5 651 31.3
Nitab4.5_0000389g0140 Nicotiana tabacum HOM05D006351 ORTHO05D007796 2.0e-67 261.2 635 31.8
FAN27G0329 Fragaria x ananassa HOM05D006351 ORTHO05D007796 2.7e-64 250.8 362 40.3
Zm00001eb028280 Zea mays HOM05D006351 ORTHO05D007796 3.3e-62 243.8 447 35.1
Ah.10g035670 Amaranthus hybridus HOM05D006351 ORTHO05D007796 4.3e-62 243.4 602 30.2
arahy.Tifrunner.gnm1.ann1.XZMU6N Arachis hypogaea HOM05D006351 ORTHO05D007796 3.5e-56 223.8 566 30.6
Medtr1g013030 Medicago truncatula HOM05D006351 ORTHO05D007796 4.5e-51 206.8 336 38.1
CAN.G142.3 Capsicum annuum HOM05D006351 ORTHO05D007796 5.1e-47 193.4 308 39.0
arahy.Tifrunner.gnm1.ann1.C8TN8W Arachis hypogaea HOM05D006351 ORTHO05D007796 1.1e-44 185.7 455 31.6
Cc11_g00420 Coffea canephora HOM05D006351 ORTHO05D007796 9.0e-44 182.6 265 40.8
SEGI_10292 Sequoiadendron giganteum HOM05D006351 ORTHO05D000001 4.1e-36 157.1 258 36.0
CANSAT25G0983 Cannabis sativa HOM05D006351 ORTHO05D007796 2.2e-34 151.4 162 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1425 Anthoceros agrestis HOM05D006351 ORTHO05D007796 6.5e-34 149.8 595 26.1
Mapoly0027s0143 Marchantia polymorpha HOM05D006351 ORTHO05D007796 9.4e-33 146.0 578 24.4
CDE02G0453 Ceratophyllum demersum HOM05D006351 ORTHO05D007796 5.1e-31 140.2 236 39.4
Pp3c8_15630 Physcomitrium patens HOM05D006351 ORTHO05D007796 1.5e-30 138.7 516 25.4
SMO200G0034 Selaginella moellendorffii HOM05D006351 ORTHO05D007796 1.8e-28 131.7 505 25.5
Pp3c20_13310 Physcomitrium patens HOM05D006351 ORTHO05D007796 1.7e-26 125.2 510 23.5
MBI14_g30358_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 2.3e-23 114.8 153 43.1
CAN.G142.4 Capsicum annuum HOM05D006351 ORTHO05D007796 2.3e-15 88.2 182 36.3
FAN07G1533 Fragaria x ananassa HOM05D006351 ORTHO05D007796 1.5e-14 85.5 92 46.7
Medtr1g012280 Medicago truncatula HOM05D006351 ORTHO05D007796 2.8e-13 81.3 127 40.2
CAN.G142.2 Capsicum annuum HOM05D006351 ORTHO05D007796 5.0e-10 70.5 131 32.8
Medtr1g013010 Medicago truncatula HOM05D006351 ORTHO05D007796 4.0e-07 60.8 72 44.4


User provided reference genes

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